CHJ566 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHJ566
Library	CH (Link to library)
Clone ID	CHJ566 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U13037-1\|Contig-U16527-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHJ5-C/CHJ566Q.Seq.d/
Representative seq. ID	CHJ566P (Link to Original site)
Representative DNA sequence	>CHJ566 (CHJ566Q) /CSM/CH/CHJ5-C/CHJ566Q.Seq.d/ GTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTATAAATTCTTGTACGATG AAACTGCAGACGGCTCATTACAACAGTGATAAACTAATAGACTTTCGGGTTTTACCTTTT GGATAACCGCAGTAAATCGGGGCTAATACATACAAGCGATGGGTGACTGGCAACGGAAGC TCAGCGATTATTAGCATTCTACCAATGCCTTCGGGTTTTGGGTGATACCGAATAATATTG CAGATCGAGGATTTATCTTCGACAAGTCTACTGTGTCACTGCCCTATCAACTTTCGATGG TACGGTATTGGCCTACCATGGTTGTAACGGGTAACGGGGAATTAGGGTTCGATTCCGGAG AGGGAGCCTGAGAAATGGCTACCACTTCTACGGAAGGCAGCAGGCGCGCAAATTACTCAA TCCCAATACGGGGAAGTAGTGACAATAAATATCAATACCTATCCTTTTTGGAGGGCAATT GAAATGAACACAAATTAAAACTCTTAATTAACACAATTGGAGGGCAAGTCTGGTGCCAGC AGCCCGCGGTAATTCCAGCTCCAATAGCATATACTAAAGTXXXXXXXXXXGGATCATTTT ATTGTACAATTATCAAATAATTAATAATAATGGCAGGTGGAAAGAGAGGTGGTAAAGTAG CACCAACCAAAACATTTGGTCGTGATTATGAAAGAAGTAAAGGAAAAATTAGTCGTGATC GTGTTTATGATGAAGAGGATATTATAAAGAGAAATCAAGAAAGCGATAGTGATGATAATT CTGGTTCTGAATCAGGTTCAGAAAATGAAACAAAAAATAATAATAATAAAAGTAAATTAG GTAGTGATTCAAGTGATGATGAACCAGTCATTGTCTCTAGAAATCCAAATGCCAAAAAAC CAGCAGCTAAAAGACCACCAACCACTAAAAAACAACAAGAGAGCGATAGTGAAGACGATT CAGATAAAGAAAGTGATAGTGAAGACGAAATCGCTAATCCAAATAGAATGAAACAAGTTA CTAAAAAACTAAGTGAAATCAATGTAAACGCTAAAGTTGAACTTTCACGTAGAGAAAAAG AAGAACTCGCAAGACAAGCCGCAACTCAAAGACAAAACGAAAAACAACAAAAAAGGATNC TCGAAAGATTACAAGTCATAAGAAAACAAANNAAGAAGCAGCAAAAC
sequence update	2002.10.25
Translated Amino Acid sequence	hmlvskikpcmskykflydetadgslqq*tnrlsgftfwitavnrgyiqamgdwqrkl sdyhstnafgfwvipnniadrgfifdkstvslpyqlsmvrywptmvvtgngelgfdsge gaemattstegsrranysipirgssdnkyqylsflegnNEHKLKLLINTIGGQVWCQQ PAVIPAPIAYTK--- ---IILLYNYQIINNNGRWKERWsstnqniwslkkrknssclrgyykeksrk r**fwfirfrknkk**kirfktshclkskcqktsskttnhkttre r*rrfrrk**rrnrsknetsyktknqckrstftrkrrtrktsrnsktkrk ttkkdxrkitshkktxxeaak
Translated Amino Acid sequence (All Frames)	Frame A: viclsqrlshaclsinsctmklqtahynsdklidfrvlpfgpqigantykrwvtgngs saiisilpmpsgfgyriilqiedlsstsllchcpinfrwygiglpwlrvtgngsipe repekwlpllrkaagaqitqsqygevvtinintypfwraiemntnnsltqlegksgas sprfqlqhilk--- ---gsfyctiikliimaggkrggkvaptktfgrdyerskgkisrdrvydeediikrnqe sdsddnsgsesgsenetknnnnksklgsdssddepvivsrnpnakkpaakrppttkkqqe sdseddsdkesdsedeianpnrmkqvtkklseinvnakvelsrrekeelarqaatqrqne kqqkrxlerlqvirkqxkkqqn Frame B: syaclkdamhvvilvrncrrlittvin*tfgfylldnrsksglihtsdglatea qrllafyqclrvlgdteycrsriylrqvycvtalstfdgtvlayhgcngrgirvrfrr gslrngyhfygrqqarkllnpntgk*qisipilfggqlktqiktlnhnwraslvpa argnsssnsiys--- ---dhfivqlsnn*wqverevvkhqpkhlvvimkevkeklvvivfmmkrilreikk aivmiilvlnqvqkmkqkiiiikvnvviqvmmnqslsleiqmpknqqlkdhqplknnkr aivktiqikkvivktksliqienkllknvksmtlklnfhvekkknsqdkpqlkdktk nnkkgxskdyksenkxrssk Frame C: hmlvskikpcmskykflydetadgslqq*tnrlsgftfwitavnrgyiqamgdwqrkl sdyhstnafgfwvipnniadrgfifdkstvslpyqlsmvrywptmvvtgngelgfdsge gaemattstegsrranysipirgssdnkyqylsflegnNEHKLKLLINTIGGQVWCQQ PAVIPAPIAYTK--- ---IILLYNYQIINNNGRWKERWsstnqniwslkkrknssclrgyykeksrk r**fwfirfrknkk**kirfktshclkskcqktsskttnhkttre r*rrfrrk**rrnrsknetsyktknqckrstftrkrrtrktsrnsktkrk ttkkdxrkitshkktxxeaak
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHJ566 (CHJ566Q) /CSM/CH/CHJ5-C/CHJ566Q.Seq.d/ 1526 0.0 CHO248 (CHO248Q) /CSM/CH/CHO2-B/CHO248Q.Seq.d/ 1150 0.0 CHG692 (CHG692Q) /CSM/CH/CHG6-D/CHG692Q.Seq.d/ 1150 0.0 CHM837 (CHM837Q) /CSM/CH/CHM8-B/CHM837Q.Seq.d/ 1142 0.0 CHI773 (CHI773Q) /CSM/CH/CHI7-D/CHI773Q.Seq.d/ 1142 0.0 SFK216 (SFK216Q) /CSM/SF/SFK2-A/SFK216Q.Seq.d/ 1136 0.0 VHG238 (VHG238Q) /CSM/VH/VHG2-B/VHG238Q.Seq.d/ 1134 0.0 VHE381 (VHE381Q) /CSM/VH/VHE3-D/VHE381Q.Seq.d/ 1134 0.0 VFG294 (VFG294Q) /CSM/VF/VFG2-D/VFG294Q.Seq.d/ 1134 0.0 AHJ584 (AHJ584Q) /CSM/AH/AHJ5-D/AHJ584Q.Seq.d/ 1128 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AY171066\|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment. 1078 0.0 2 K02641\|K02641.1 Slime mold (D.discoideum) 17S small subunit ribosomal RNA gene, complete coding sequence. 1070 0.0 2 X00134\|X00134.1 Dictyostelium discoideum 17S rRNA sequence. 1065 0.0 2 AY040329\|AY040329.1 Dictyostelium dimigraformum 18S ribosomal RNA gene, partial sequence. 1061 0.0 2 AY040330\|AY040330.1 Dictyostelium firmibasis 18S ribosomal RNA gene, partial sequence. 1045 0.0 2 X00601\|X00601.1 Dictyostelium discoideum ribosomal RNA gene. 575 0.0 4 AY040331\|AY040331.1 Dictyostelium giganteum 18S ribosomal RNA gene, partial sequence. 634 0.0 5 AY040335\|AY040335.1 Dictyostelium purpureum 18S ribosomal RNA gene, partial sequence. 611 0.0 4 AY040336\|AY040336.1 Dictyostelium sphaerocephalum 18S ribosomal RNA gene, partial sequence. 458 0.0 6 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 533 0.0 4
dna update	2005. 1.16
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q556U5) RecName: Full=28 kDa heat- and acid-stable phosphoprote... 199 2e-49 EU979522_1(EU979522\|pid:none) Ornithoctonus huwena clone HWEco7 ... 59 4e-07 BC052972_1(BC052972\|pid:none) Danio rerio solute carrier family ... 56 2e-06 U65960_1(U65960\|pid:none) Human kinase substrate HASPP28 gene, 5... 55 4e-06 AY892433_1(AY892433\|pid:none) Synthetic construct Homo sapiens c... 55 4e-06 U41744_1(U41744\|pid:none) Rattus norvegicus PDGF associated prot... 55 4e-06 BC073674_1(BC073674\|pid:none) Xenopus laevis MGC83035 protein, m... 52 5e-05 BC157793_1(BC157793\|pid:none) Xenopus tropicalis hypothetical pr... 51 9e-05 AB006698_6(AB006698\|pid:none) Arabidopsis thaliana genomic DNA, ... 50 1e-04 BT063296_1(BT063296\|pid:none) Zea mays full-length cDNA clone ZM... 47 0.001
protein update	2009. 4. 3
PSORT	psg: 0.89 gvh: 0.53 alm: 0.39 top: 0.43 tms: 0.00 mit: 0.18 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: cytoplasmic 28.0 %: nuclear 8.0 %: mitochondrial 8.0 %: peroxisomal 4.0 %: cytoskeletal 4.0 %: endoplasmic reticulum >> prediction for CHJ566 is cyt
5' end seq. ID	CHJ566F
5' end seq.	>CHJ566F.Seq GTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTATAAATTCTTGTACGATG AAACTGCAGACGGCTCATTACAACAGTGATAAACTAATAGACTTTCGGGTTTTACCTTTT GGATAACCGCAGTAAATCGGGGCTAATACATACAAGCGATGGGTGACTGGCAACGGAAGC TCAGCGATTATTAGCATTCTACCAATGCCTTCGGGTTTTGGGTGATACCGAATAATATTG CAGATCGAGGATTTATCTTCGACAAGTCTACTGTGTCACTGCCCTATCAACTTTCGATGG TACGGTATTGGCCTACCATGGTTGTAACGGGTAACGGGGAATTAGGGTTCGATTCCGGAG AGGGAGCCTGAGAAATGGCTACCACTTCTACGGAAGGCAGCAGGCGCGCAAATTACTCAA TCCCAATACGGGGAAGTAGTGACAATAAATATCAATACCTATCCTTTTTGGAGGGCAATT GAAATGAACACAAATTAAAACTCTTAATTAACACAATTGGAGGGCAAGTCTGGTGCCAGC AGCCCGCGGTAATTCCAGCTCCAATAGCATATACTAAAGTNNNNNNNNNN
Length of 5' end seq.	590
3' end seq. ID	CHJ566Z
3' end seq.	>CHJ566Z.Seq NNNNNNNNNNGGATCATTTTATTGTACAATTATCAAATAATTAATAATAATGGCAGGTGG AAAGAGAGGTGGTAAAGTAGCACCAACCAAAACATTTGGTCGTGATTATGAAAGAAGTAA AGGAAAAATTAGTCGTGATCGTGTTTATGATGAAGAGGATATTATAAAGAGAAATCAAGA AAGCGATAGTGATGATAATTCTGGTTCTGAATCAGGTTCAGAAAATGAAACAAAAAATAA TAATAATAAAAGTAAATTAGGTAGTGATTCAAGTGATGATGAACCAGTCATTGTCTCTAG AAATCCAAATGCCAAAAAACCAGCAGCTAAAAGACCACCAACCACTAAAAAACAACAAGA GAGCGATAGTGAAGACGATTCAGATAAAGAAAGTGATAGTGAAGACGAAATCGCTAATCC AAATAGAATGAAACAAGTTACTAAAAAACTAAGTGAAATCAATGTAAACGCTAAAGTTGA ACTTTCACGTAGAGAAAAAGAAGAACTCGCAAGACAAGCCGCAACTCAAAGACAAAACGA AAAACAACAAAAAAGGATNCTCGAAAGATTACAAGTCATAAGAAAACAAANNAAGAAGCA GCAAAAC
Length of 3' end seq.	607
Connected seq. ID	CHJ566P
Connected seq.	>CHJ566P.Seq GTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTATAAATTCTTGTACGATG AAACTGCAGACGGCTCATTACAACAGTGATAAACTAATAGACTTTCGGGTTTTACCTTTT GGATAACCGCAGTAAATCGGGGCTAATACATACAAGCGATGGGTGACTGGCAACGGAAGC TCAGCGATTATTAGCATTCTACCAATGCCTTCGGGTTTTGGGTGATACCGAATAATATTG CAGATCGAGGATTTATCTTCGACAAGTCTACTGTGTCACTGCCCTATCAACTTTCGATGG TACGGTATTGGCCTACCATGGTTGTAACGGGTAACGGGGAATTAGGGTTCGATTCCGGAG AGGGAGCCTGAGAAATGGCTACCACTTCTACGGAAGGCAGCAGGCGCGCAAATTACTCAA TCCCAATACGGGGAAGTAGTGACAATAAATATCAATACCTATCCTTTTTGGAGGGCAATT GAAATGAACACAAATTAAAACTCTTAATTAACACAATTGGAGGGCAAGTCTGGTGCCAGC AGCCCGCGGTAATTCCAGCTCCAATAGCATATACTAAAGT----------GGATCATTTT ATTGTACAATTATCAAATAATTAATAATAATGGCAGGTGGAAAGAGAGGTGGTAAAGTAG CACCAACCAAAACATTTGGTCGTGATTATGAAAGAAGTAAAGGAAAAATTAGTCGTGATC GTGTTTATGATGAAGAGGATATTATAAAGAGAAATCAAGAAAGCGATAGTGATGATAATT CTGGTTCTGAATCAGGTTCAGAAAATGAAACAAAAAATAATAATAATAAAAGTAAATTAG GTAGTGATTCAAGTGATGATGAACCAGTCATTGTCTCTAGAAATCCAAATGCCAAAAAAC CAGCAGCTAAAAGACCACCAACCACTAAAAAACAACAAGAGAGCGATAGTGAAGACGATT CAGATAAAGAAAGTGATAGTGAAGACGAAATCGCTAATCCAAATAGAATGAAACAAGTTA CTAAAAAACTAAGTGAAATCAATGTAAACGCTAAAGTTGAACTTTCACGTAGAGAAAAAG AAGAACTCGCAAGACAAGCCGCAACTCAAAGACAAAACGAAAAACAACAAAAAAGGATNC TCGAAAGATTACAAGTCATAAGAAAACAAANNAAGAAGCAGCAAAAC
Length of connected seq.	1177
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas