>CHR208 (CHR208Q) /CSM/CH/CHR2-A/CHR208Q.Seq.d/
XXXXXXXXXXTTTTTAGTTANGATTTTGGTTNTTACTTGGATATTCAAAATTCAATTGAT
CAAGATTTCAAANATANAGNTAAATGGGGTAAAAAATCAATTATGGNTTCAGTTTGNTGT
GGTAAATTCAGTTCAGATAGAACCNTTAAAGAGTATGNTCAACAAATTTGGGGTATTGAA
NAATGGAANAGACCAGGTCCAGTTCCAGTTTCAAANGAANAAGNTCGTTTTTTATTAGTT
CCNCCNCCATTTGGTTCACCAAATGATATCAATGNTATTTCAATTGAAAGATTATCNCCT
TTAACTTTTGTTAAACAAANTTNTGNTTTTCCANTATCTGTTATNTNTGGNGGTGATAAA
ACCAACAACNCTTTAAAACCAAAACAAACTACAAAAGGTTTTAATATTGGTGGTCAACCA
G

---FSXDFGXYLDIQNSIDQDFKXXXKWGKKSIMXSVXCGKFSSDRTXKEYXQQIWGIEX
WXRPGPVPVSXEXXRFLLVPPPFGSPNDINXISIERLSPLTFVKQXXXFPXSVXXGGDKT
NNXLKPKQTTKGFNIGGQP

Frame A:
---f*lxfwxllgyskfn*srfqxxx*mg*kinygfslxw*iqfr*nx*rvxstnlgy*x
mextrssssfkxxxsffissxxiwftk*yqxyfn*kiixfnfc*txxxfsxicyxwx**n
qqxfktktnykrf*ywwst


Frame B:
---FSXDFGXYLDIQNSIDQDFKXXXKWGKKSIMXSVXCGKFSSDRTXKEYXQQIWGIEX
WXRPGPVPVSXEXXRFLLVPPPFGSPNDINXISIERLSPLTFVKQXXXFPXSVXXGGDKT
NNXLKPKQTTKGFNIGGQP


Frame C:
---lvxilvxtwifkiqlikisxixxngvknqlwxqfxvvnsvqieplksmxnkfgvlxn
gxdqvqfqfqxxkxvfy*fxxhlvhqmismxfqlkdyxl*lllnkxxxfxyllxxxvikp
ttl*nqnklqkvlilvvnq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR208 (CHR208Q) /CSM/CH/CHR2-A/CHR208Q.Seq.d/                        660   0.0
SHA703 (SHA703Q) /CSM/SH/SHA7-A/SHA703Q.Seq.d/                        628   e-179
CHG639 (CHG639Q) /CSM/CH/CHG6-B/CHG639Q.Seq.d/                        624   e-178
AHQ446 (AHQ446Q) /CSM/AH/AHQ4-B/AHQ446Q.Seq.d/                        622   e-178
AHB459 (AHB459Q) /CSM/AH/AHB4-C/AHB459Q.Seq.d/                        620   e-177
SHK424 (SHK424Q) /CSM/SH/SHK4-A/SHK424Q.Seq.d/                        618   e-176
AHI465 (AHI465Q) /CSM/AH/AHI4-C/AHI465Q.Seq.d/                        618   e-176
SSE676 (SSE676Q) /CSM/SS/SSE6-D/SSE676Q.Seq.d/                        615   e-175
SSA564 (SSA564Q) /CSM/SS/SSA5-C/SSA564Q.Seq.d/                        615   e-175
SHL184 (SHL184Q) /CSM/SH/SHL1-D/SHL184Q.Seq.d/                        615   e-175

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M77492|M77492.1 Dictyostelium discoideum glycoprotein phosphorylase 2 (glpD) gene, complete cds.   615   e-172  1
AC093434|AC093434.1 Homo sapiens chromosome 1 clone RP11-100D1, WORKING DRAFT SEQUENCE, 4 unordered pieces.    46   0.57   1
AL358939|AL358939.9 Human DNA sequence from clone RP11-100D1...    46   0.57   1
CR956631|CR956631.7 M.truncatula DNA sequence *** SEQUENCING IN PROGRESS *** from clone MTH2-65L9.    42   0.62   3
AC156821|AC156821.2 Bos taurus clone CH240-60M1, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces.    38   0.67   2
BU803701|BU803701.1 SJFAXD07 SJF Schistosoma japonicum cDNA, mRNA sequence.    44   2.3    1
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   2.5    7
AF506028|AF506028.1 Poncirus trifoliata citrus tristeza virus resistance gene locus, complete sequence.    42   2.9    4
AC154462|AC154462.2 Mus musculus BAC clone RP24-165F12 from chromosome 14, complete sequence.    42   6.9    2
AL713919|AL713919.11 Mouse DNA sequence from clone RP23-41F14 on chromosome 11.    40   7.2    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU165056_1(EU165056|pid:none) Cyanophora paradoxa starch phospho...    63   3e-09
CP000584_198(CP000584|pid:none) Ostreococcus lucimarinus CCE9901...    62   8e-09
CP000382_94(CP000382|pid:none) Clostridium novyi NT, complete ge...    61   1e-08
CP001330_331(CP001330|pid:none) Micromonas sp. RCC299 chromosome...    60   2e-08
CR954204_212(CR954204|pid:none) Ostreococcus tauri strain OTTH05...    60   3e-08
CP000478_1455(CP000478|pid:none) Syntrophobacter fumaroxidans MP...    59   7e-08
AK103367_1(AK103367|pid:none) Oryza sativa Japonica Group cDNA c...    58   9e-08
(Q9LKJ3) RecName: Full=Alpha-glucan phosphorylase, H isozyme;   ...    58   9e-08
AF326977_1(AF326977|pid:none) Oryza sativa alpha 1,4-glucan phos...    58   9e-08
EF576564_1(EF576564|pid:none) Oryza sativa (indica cultivar-grou...    58   9e-08

 psg: 0.75  gvh: 0.38  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial

>> prediction for CHR208 is nuc

>CHR208Z.Seq
NNNNNNNNNNTTTTTAGTTANGATTTTGGTTNTTACTTGGATATTCAAAATTCAATTGAT
CAAGATTTCAAANATANAGNTAAATGGGGTAAAAAATCAATTATGGNTTCAGTTTGNTGT
GGTAAATTCAGTTCAGATAGAACCNTTAAAGAGTATGNTCAACAAATTTGGGGTATTGAA
NAATGGAANAGACCAGGTCCAGTTCCAGTTTCAAANGAANAAGNTCGTTTTTTATTAGTT
CCNCCNCCATTTGGTTCACCAAATGATATCAATGNTATTTCAATTGAAAGATTATCNCCT
TTAACTTTTGTTAAACAAANTTNTGNTTTTCCANTATCTGTTATNTNTGGNGGTGATAAA
ACCAACAACNCTTTAAAACCAAAACAAACTACAAAAGGTTTTAATATTGGTGGTCAACCA
G