>CHR866 (CHR866Q) /CSM/CH/CHR8-C/CHR866Q.Seq.d/
XXXXXXXXXXCCAGTTAATAAAGTTGTTGTATTTGGTGGTGATAGATCACAAGCAATTCA
AATTAGTGGAGCATTTACAAGATTCCAAGGTAGAATTAATTTAGAATTAAATCTTTTGAA
TACAAGTCAACAAGGTATGTCAAAATTCAAGATTCAATTTTATCAAAATAGTTTTGGTAT
TTCACCAGCTGATCAAATCTTATCATGTGGTGCTATTGAAGTAGGCCAAAGCACTGATGT
CACAATTCCAATCTCATGCAATGGTCAAATCTCAAATCCATTGAATCCAGTCATTGATAT
GGCAATGATGGTATTACCAAGTCAAGAGAGATTCTACTTTAAGATGAATTTCCCATTACT
TTGTCTATTGACAGAAACTGGTCGTCTCGATCGTGAATCTTATTTATCCATGTGGAAATC
AATTCCAGAATCAAATGAACGTTCAGTTGAAATTCAAGTACGTTTACCACATGTAGATGT
TGACTCTATCCTTCGTCGTTTAAATAGTAAGAATATCTTTGAAATCGTTANAAANAAAGN
TNCAACTCAAGA

---VNKVVVFGGDRSQAIQISGAFTRFQGRINLELNLLNTSQQGMSKFKIQFYQNSFGIS
PADQILSCGAIEVGQSTDVTIPISCNGQISNPLNPVIDMAMMVLPSQERFYFKMNFPLLC
LLTETGRLDRESYLSMWKSIPESNERSVEIQVRLPHVDVDSILRRLNSKNIFEIVXXKXX
TQ

Frame A:
---qlikllylvvidhkqfklvehlqdskveli*n*if*iqvnkvcqnsrfnfikivlvf
hqliksyhvvllk*akalmsqfqshamvksqih*iqsliwq*wyyqvkrdstlr*ishyf
vy*qklvvsivnliypcgnqfqnqmnvqlkfkyvyhm*mltlsfvv*ivrislkslxxkx
qlk


Frame B:
---s**scciww**itsnsn*wsiykipr*n*friksfeykstryvkiqdsilsk*fwyf
ts*snlimwcy*srpkh*chnsnlmqwsnlksiessh*ygndgitksreill*defpitl
sidrnwssrs*ilfihveinsrik*tfs*nsstfttcrc*lypssfk**eyl*nrxkxxx
nsr


Frame C:
---VNKVVVFGGDRSQAIQISGAFTRFQGRINLELNLLNTSQQGMSKFKIQFYQNSFGIS
PADQILSCGAIEVGQSTDVTIPISCNGQISNPLNPVIDMAMMVLPSQERFYFKMNFPLLC
LLTETGRLDRESYLSMWKSIPESNERSVEIQVRLPHVDVDSILRRLNSKNIFEIVXXKXX
TQ

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP238 (VHP238Q) /CSM/VH/VHP2-B/VHP238Q.Seq.d/                       1031   0.0
VHN515 (VHN515Q) /CSM/VH/VHN5-A/VHN515Q.Seq.d/                       1031   0.0
VHN430 (VHN430Q) /CSM/VH/VHN4-B/VHN430Q.Seq.d/                       1031   0.0
VHM895 (VHM895Q) /CSM/VH/VHM8-D/VHM895Q.Seq.d/                       1031   0.0
VHM229 (VHM229Q) /CSM/VH/VHM2-B/VHM229Q.Seq.d/                       1031   0.0
VHD246 (VHD246Q) /CSM/VH/VHD2-B/VHD246Q.Seq.d/                       1031   0.0
VHC611 (VHC611Q) /CSM/VH/VHC6-A/VHC611Q.Seq.d/                       1031   0.0
VHB374 (VHB374Q) /CSM/VH/VHB3-D/VHB374Q.Seq.d/                       1031   0.0
VHA862 (VHA862Q) /CSM/VH/VHA8-C/VHA862Q.Seq.d/                       1031   0.0
VFF468 (VFF468Q) /CSM/VF/VFF4-C/VFF468Q.Seq.d/                       1031   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC138052|AC138052.2 Felis catus clone RP86-222L20, WORKING DRAFT SEQUENCE, 2 ordered pieces.    38   0.57   3
CX072513|CX072513.1 UCRCS08_28E10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-28E10-J20-1-4.g, mRNA sequence.    46   0.77   1
CX072512|CX072512.1 UCRCS08_28E10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-28E10-J20-1-5.b, mRNA sequence.    46   0.77   1
AC140642|AC140642.5 Macaca mulatta clone CH250-288A22, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    46   0.77   1
CE759919|CE759919.1 tigr-gss-dog-17000369972948 Dog Library Canis familiaris genomic, genomic survey sequence.    34   4.2    2
AC146749|AC146749.23 Medicago truncatula clone mth2-145a1, complete sequence.    30   5.6    2
AC121241|AC121241.32 Medicago truncatula clone mth2-4n3, complete sequence.    30   5.6    2
AC129727|AC129727.3 Rattus norvegicus clone CH230-506O21, WORKING DRAFT SEQUENCE, 1 ordered piece.    40   5.7    2
AC138793|AC138793.1 Homo sapiens chromosome 16 clone CTD-2072N6, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38   6.8    2
CT027662|CT027662.1 Medicago truncatula chromosome 5 clone mth2-106e24, COMPLETE  SEQUENCE.    36   8.6    3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54X82) RecName: Full=AP-1 complex subunit beta; AltName: Full=...   346   3e-94
(P62944) RecName: Full=AP-2 complex subunit beta-1; AltName: Ful...   105   8e-22
CR860139_1(CR860139|pid:none) Pongo abelii mRNA; cDNA DKFZp469O1...   105   8e-22
(Q08DS7) RecName: Full=AP-1 complex subunit beta-1; AltName: Ful...   105   8e-22
AY341427_1(AY341427|pid:none) Homo sapiens beta adaptin subunit ...   105   8e-22
(P63009) RecName: Full=AP-2 complex subunit beta-1; AltName: Ful...   105   8e-22
BC012150_1(BC012150|pid:none) Homo sapiens, clone IMAGE:4558274,...   105   8e-22
AK304126_1(AK304126|pid:none) Homo sapiens cDNA FLJ55646 complet...   105   8e-22
CR749392_1(CR749392|pid:none) Homo sapiens mRNA; cDNA DKFZp781K0...   105   1e-21
AB462935_1(AB462935|pid:none) Synthetic construct DNA, clone: pF...   104   2e-21

 psg: 0.86  gvh: 0.46  alm: 0.45  top: 0.47  tms: 0.00  mit: 0.27  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHR866 is nuc

>CHR866Z.Seq
NNNNNNNNNNCCAGTTAATAAAGTTGTTGTATTTGGTGGTGATAGATCACAAGCAATTCA
AATTAGTGGAGCATTTACAAGATTCCAAGGTAGAATTAATTTAGAATTAAATCTTTTGAA
TACAAGTCAACAAGGTATGTCAAAATTCAAGATTCAATTTTATCAAAATAGTTTTGGTAT
TTCACCAGCTGATCAAATCTTATCATGTGGTGCTATTGAAGTAGGCCAAAGCACTGATGT
CACAATTCCAATCTCATGCAATGGTCAAATCTCAAATCCATTGAATCCAGTCATTGATAT
GGCAATGATGGTATTACCAAGTCAAGAGAGATTCTACTTTAAGATGAATTTCCCATTACT
TTGTCTATTGACAGAAACTGGTCGTCTCGATCGTGAATCTTATTTATCCATGTGGAAATC
AATTCCAGAATCAAATGAACGTTCAGTTGAAATTCAAGTACGTTTACCACATGTAGATGT
TGACTCTATCCTTCGTCGTTTAAATAGTAAGAATATCTTTGAAATCGTTANAAANAAAGN
TNCAACTCAAGA