>CHS174 (CHS174Q) /CSM/CH/CHS1-D/CHS174Q.Seq.d/
CAAATCTTACAACTGTCAATAAACAAGGTCGTATTTATTCACCAGAATTATTTAAATACT
TTTTCGCTGATAATTCTGATGCTCCAGATAGAAACAATAGTGGTAAAAATTATCCATTAG
ATATTACTCTTACAATGAATTTAGATGATAAATCAAATTATTTTTATGATAATCAAGAAT
TTTTCCCAATTGATGGAAGAGGATTTGATGTAGATCAACAATTCCGTAACTATTATGATG
ATGAAAGTAAAGCAAATCCAAAACCATATCATAATTATCACTTCTGTGCCAAAATTACCA
ATAGTCGTTTCACATACAAAGGTTTTGAAACATTTAGATTCGTAGGTGATGATGATGTTT
GGGTATTCATTGATAGAAAGTTGGTTGTAGATTTGGGTGGTTTACATATTGCTCAAGAGA
AAACTATTGATCTTACTAAACTTGGTCTTGTTGTTAATAAACTCTATGTAATTGATTTCT
TCTATTGTGAAAGACATACTTCAAGATCAACAATTCGTATTGAAACAACAATTGAACTTC
AATGTCCATGGTATGATTTCTGTGGTGTATGTACTGGTAATGGXXXXXXXXXX

NLTTVNKQGRIYSPELFKYFFADNSDAPDRNNSGKNYPLDITLTMNLDDKSNYFYDNQEF
FPIDGRGFDVDQQFRNYYDDESKANPKPYHNYHFCAKITNSRFTYKGFETFRFVGDDDVW
VFIDRKLVVDLGGLHIAQEKTIDLTKLGLVVNKLYVIDFFYCERHTSRSTIRIETTIELQ
CPWYDFCGVCTGN---

Frame A:
qilqlsinkvvfihqnylntfsliilmlqietivvkiih*illlq*i*minqiifmiikn
fsqlmeedlm*innsvtimmmkvkqiqnhiiiitsvpklpivvshtkvlkhlds*vmmmf
gyslieswl*iwvvyillkrkllillnlvlllinsm*lissivkdilqdqqfvlkqqlnf
nvhgmisvvyvlvm---


Frame B:
ksyncq*trsylftrii*ilfr**f*csr*kq*w*klsiryysynefr**iklfl**sri
fpn*wkri*crstip*ll***k*sksktis*lsllcqnyq*sfhiqrf*ni*irr***cl
gih**kvgcrfgwftycsreny*sy*twscc**tlcn*flll*ktyfkinnsy*nnn*ts
msmv*flwcmyw*---


Frame C:
NLTTVNKQGRIYSPELFKYFFADNSDAPDRNNSGKNYPLDITLTMNLDDKSNYFYDNQEF
FPIDGRGFDVDQQFRNYYDDESKANPKPYHNYHFCAKITNSRFTYKGFETFRFVGDDDVW
VFIDRKLVVDLGGLHIAQEKTIDLTKLGLVVNKLYVIDFFYCERHTSRSTIRIETTIELQ
CPWYDFCGVCTGN---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS174 (CHS174Q) /CSM/CH/CHS1-D/CHS174Q.Seq.d/                       1156   0.0
CHE764 (CHE764Q) /CSM/CH/CHE7-C/CHE764Q.Seq.d/                       1156   0.0
AHI515 (AHI515Q) /CSM/AH/AHI5-A/AHI515Q.Seq.d/                       1156   0.0
AFO202 (AFO202Q) /CSM/AF/AFO2-A/AFO202Q.Seq.d/                       1156   0.0
AHK305 (AHK305Q) /CSM/AH/AHK3-A/AHK305Q.Seq.d/                       1148   0.0
CHJ357 (CHJ357Q) /CSM/CH/CHJ3-C/CHJ357Q.Seq.d/                       1136   0.0
CHM779 (CHM779Q) /CSM/CH/CHM7-D/CHM779Q.Seq.d/                       1122   0.0
AHD325 (AHD325Q) /CSM/AH/AHD3-B/AHD325Q.Seq.d/                       1106   0.0
SSD423 (SSD423Q) /CSM/SS/SSD4-A/SSD423Q.Seq.d/                       1059   0.0
CHK343 (CHK343Q) /CSM/CH/CHK3-B/CHK343Q.Seq.d/                       1057   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB053203|AB053203.1 Dictyostelium discoideum psiA mRNA for Psi facor, complete cds.    88   3e-34  7
U67940|U67940.1 Dictyostelium discoideum ORFveg106 mRNA, complete cds.    80   1e-23  4
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    76   7e-15  3
AJ548837|AJ548837.1 Dictyostelium discoideum mRNA for extracellular signalling molecule  DicA (dicA gene).    48   4e-04  2
AJ548838|AJ548838.1 Dictyostelium discoideum dicA gene for extracellular signalling  molecule DicA, exons 1-2.    48   5e-04  2
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    46   0.005  8
AE017147|AE017147.1 Helicobacter hepaticus ATCC 51449 section 4 of 6 of the complete genome.    52   0.013  1
Z19555|Z19555.1 Caenorhabditis elegans Cosmid F02A9.               44   0.73   2
CD462718|CD462718.1 ETH1_39_F07.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_39_F07_A002 5', mRNA sequence.    46   0.81   1
BP044962|BP044962.1 Lotus corniculatus var. japonicus cDNA, clone:SPD012e08_f, 3' end.    46   0.81   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q968Z6) RecName: Full=Protein psiA; AltName: Full=Prespore-cell...   209   3e-53
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   201   1e-50
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   201   2e-50
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor;                168   8e-41
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   166   3e-40
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                160   2e-38
(Q55FQ5) RecName: Full=Protein psiS; Flags: Precursor;                157   3e-37
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                148   1e-34
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                141   1e-32
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                140   2e-32

 psg: 0.67  gvh: 0.31  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for CHS174 is cyt

>CHS174F.Seq
CAAATCTTACAACTGTCAATAAACAAGGTCGTATTTATTCACCAGAATTATTTAAATACT
TTTTCGCTGATAATTCTGATGCTCCAGATAGAAACAATAGTGGTAAAAATTATCCATTAG
ATATTACTCTTACAATGAATTTAGATGATAAATCAAATTATTTTTATGATAATCAAGAAT
TTTTCCCAATTGATGGAAGAGGATTTGATGTAGATCAACAATTCCGTAACTATTATGATG
ATGAAAGTAAAGCAAATCCAAAACCATATCATAATTATCACTTCTGTGCCAAAATTACCA
ATAGTCGTTTCACATACAAAGGTTTTGAAACATTTAGATTCGTAGGTGATGATGATGTTT
GGGTATTCATTGATAGAAAGTTGGTTGTAGATTTGGGTGGTTTACATATTGCTCAAGAGA
AAACTATTGATCTTACTAAACTTGGTCTTGTTGTTAATAAACTCTATGTAATTGATTTCT
TCTATTGTGAAAGACATACTTCAAGATCAACAATTCGTATTGAAACAACAATTGAACTTC
AATGTCCATGGTATGATTTCTGTGGTGTATGTACTGGTAATGGNNNNNNNNNN