>CHS177 (CHS177Q) /CSM/CH/CHS1-D/CHS177Q.Seq.d/
XXXXXXXXXXTTNAAAAAAAAATAAAAAAAGGTTTTTTTTTTATTTATTTATTTTCCTTA
AATATTTATTTACCNATAATAACATAAGATTTATTGAAAAAGAAAGATAAAAATTTTAAA
GAATGTGATAAGTCNCTAAAATAGGTTAAATTTATAGATATTAATAAAAAATTAAATTTA
TATAAATTAAAAATAAAATATTAAAATATTTTTTTTATATAAAAAAAAAAACAATAATAA
TAATAATAATAATAACCTAAAGCTGACAAAAATTAAAAAAATAAATAAAC

---XKKNKKRFFFYLFIFLKYLFTXNNIRFIEKER*kf*rm**vxkig*iyry**kikfi
*iknkilkyffyikkktiiiiiiit*s*qklkk*in

Frame A:
---XKKNKKRFFFYLFIFLKYLFTXNNIRFIEKER*kf*rm**vxkig*iyry**kikfi
*iknkilkyffyikkktiiiiiiit*s*qklkk*in


Frame B:
---xkkikkgfffiylfslniylpiit*dllkkkdknfkecdkslk*vkfidinkklnly
klkiky*niffi*kkkq*******pkadkn*knk*


Frame C:
---kkk*kkvfflfiyfp*ifiyx**hkiy*krkikilknvisx*nrlnl*ilikn*iyi
n*k*nikifflykkknnnnnnnnnlkltkikkink

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS177 (CHS177Q) /CSM/CH/CHS1-D/CHS177Q.Seq.d/                        176   1e-43
AHE108 (AHE108Q) /CSM/AH/AHE1-A/AHE108Q.Seq.d/                        105   4e-22
SSE447 (SSE447Q) /CSM/SS/SSE4-B/SSE447Q.Seq.d/                         38   0.070
SSM583 (SSM583Q) /CSM/SS/SSM5-D/SSM583Q.Seq.d/                         36   0.28
SSM161 (SSM161Q) /CSM/SS/SSM1-C/SSM161Q.Seq.d/                         36   0.28
SSL206 (SSL206Q) /CSM/SS/SSL2-A/SSL206Q.Seq.d/                         36   0.28
SSI533 (SSI533Q) /CSM/SS/SSI5-B/SSI533Q.Seq.d/                         36   0.28
SSG245 (SSG245Q) /CSM/SS/SSG2-B/SSG245Q.Seq.d/                         36   0.28
SSF204 (SSF204Q) /CSM/SS/SSF2-A/SSF204Q.Seq.d/                         36   0.28
SSE879 (SSE879Q) /CSM/SS/SSE8-D/SSE879Q.Seq.d/                         36   0.28

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    38   0.009  6
AX348630|AX348630.1 Sequence 88 from Patent WO0202807.             36   0.020  4
AX251853|AX251853.1 Sequence 114 from Patent WO0168911.            36   0.020  4
AX344239|AX344239.1 Sequence 86 from Patent WO0200926.             36   0.020  4
BD460317|BD460317.1 Diagnosis of Diseases Associated with Cell Cycle.    36   0.020  4
BD452239|BD452239.1 Diagnosis of Diseases Associated with Cell Cycle.    36   0.020  4
AC122628|AC122628.4 Rattus norvegicus clone CH230-101F19, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    34   0.026  5
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    42   0.033  6
AE001422|AE001422.1 Plasmodium falciparum 3D7 chromosome 2 section 59 of 73 of the complete sequence.    42   0.043  3
BU452468|BU452468.1 603217592F1 CSEQRBN14 Gallus gallus cDNA clone ChEST206h24 5', mRNA sequence.    48   0.097  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 77,202,215

 psg: 1.00  gvh: 0.50  alm: 0.42  top: 0.20  tms: 0.00  mit: 0.42  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: extracellular, including cell wall
	 16.0 %: cytoplasmic
	 16.0 %: vacuolar
	 12.0 %: mitochondrial
	 12.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system

>> prediction for CHS177 is exc

>CHS177Z.Seq
NNNNNNNNNNTTNAAAAAAAAATAAAAAAAGGTTTTTTTTTTATTTATTTATTTTCCTTA
AATATTTATTTACCNATAATAACATAAGATTTATTGAAAAAGAAAGATAAAAATTTTAAA
GAATGTGATAAGTCNCTAAAATAGGTTAAATTTATAGATATTAATAAAAAATTAAATTTA
TATAAATTAAAAATAAAATATTAAAATATTTTTTTTATATAAAAAAAAAAACAATAATAA
TAATAATAATAATAACCTAAAGCTGACAAAAATTAAAAAAATAAATAAAC