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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS186
Library CH
(Link to library)
Clone ID CHS186
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHS186P
(Link to Original site)
Representative DNA sequence 
>CHS186 (CHS186Q) /CSM/CH/CHS1-D/CHS186Q.Seq.d/
ATTGTATATAATATTTTTAAATATATATATTAATATATATTAATATATTAATATTAATAA
AATGAAAATATTATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAA
TATTTCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGA
TTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTC
TTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGA
TGGTACATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAA
TCCAAAAGATTATTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACC
ATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATAC
CTTTGCCTATAACATTCCATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACT
TACAGTTAGAATTAGTGTTGATTTGGGTTATGTTGAGCAAACTCAACCACCAACTCAACC
ACCTACTCAACCACCTACTCAACCACCAACACCTCCACCATTTACTGGTAGTGCCGTCGC
TGGTTTATTATTTACCGATATCAATGGTAATGGAATTTTTGATGGAXXXXXXXXXXTAAT
CATAAAACAGGTCTTCATGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGAT
ATTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTAT
AATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGT
CGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTAT
GATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGT
ATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAA
CAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGTT
GATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTTCC
ATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCA
ACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTGATGCTGGTGGTTATTATTTT
AATGGTTGTTCATTTGGTATTATTCCAAAAAAATAAAATAATAAAAAAATATAAATAAAT
AAAAAAATAAAAAAATAAATAAAAAAATAAATAAAAATATAAATAAATAAATAAATAAAT
AAATAAATAAATAAATAAATAAAAATATTATAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
lyiiflniyiniy*YININKMKILYSLLLISSIILNTVLNISSQVYDQRILALKGKCYLD
SNKNALYDEGEPGFGNVEISLGNATDYKGNKYPIRYSSADGTFIYDGLTQRTTYEFTFTN
PKDYYFETYEKTLACPPGVPCIRPTVSADNLAADLLVANTFAYNIPLIKQVGVSSGSSIL
TVRISVDLGYVEQTQPPTQPPTQPPTQPPTPPPFTGSAVAGLLFTDINGNGIFDG---

---NHKTGLHDYTNAFGATKGGRDIIVTTGFDYYEAFEGSIRWYNATSGKQLKGYSLYIT
SSNGRTPSPTFGKQNGLGDITSVYDSSLPQYRVGRVWLDINGNGIQDAGEPGISGITVFL
IYGQQSTPTSQTVSDSNGYFKFEVDFSSNYYCVIPVAFFQAGSSITMRNADPTHPNTNSD
AFLSTVDNVYVTSFTSSDAGGYYFNGCSFGIIPKK*nnkki*inkkikk*ikk*iki*in
k*ink*ink*ikil*k
Translated Amino Acid sequence (All Frames) 
Frame A:
ivynifkyiy*yiliy*y**neniifiiinikynfkycikyfitsi*styfgikrkmlfr
fk*kciv**r*triwkc*nffrkcn*l*gk*isntlfic*wyiyi*winstynl*iyiyq
skrlll*nl*kdiglstrctmyssngfs**fgsrsfsckylcl*hsid*tswcfirliyt
ys*n*c*fglc*ansttnsttysttysttntstiyw*crrwfiiyryqw*wnf*w---

---*s*nrss*lyqcfwcn*rws*yycynwfrll*si*rfnslv*cnlw*ttkrllfiyn
lfkwsypisnlw*tkwsw*yyfsv*ffsstiscw*sla*ykw*wysrcw*twyfrnhsil
nlwstinsnksncirfkwlfqi*s*fqfklllcnsccilpswffhynekc*snsskyk**
cflinc**clchffyff*cwwllf*wlfiwyyskkik**knink*knkkinkkinknink
*ink*ink*inkniik

Frame B:
lyiiflniyiniy*YININKMKILYSLLLISSIILNTVLNISSQVYDQRILALKGKCYLD
SNKNALYDEGEPGFGNVEISLGNATDYKGNKYPIRYSSADGTFIYDGLTQRTTYEFTFTN
PKDYYFETYEKTLACPPGVPCIRPTVSADNLAADLLVANTFAYNIPLIKQVGVSSGSSIL
TVRISVDLGYVEQTQPPTQPPTQPPTQPPTPPPFTGSAVAGLLFTDINGNGIFDG---

---NHKTGLHDYTNAFGATKGGRDIIVTTGFDYYEAFEGSIRWYNATSGKQLKGYSLYIT
SSNGRTPSPTFGKQNGLGDITSVYDSSLPQYRVGRVWLDINGNGIQDAGEPGISGITVFL
IYGQQSTPTSQTVSDSNGYFKFEVDFSSNYYCVIPVAFFQAGSSITMRNADPTHPNTNSD
AFLSTVDNVYVTSFTSSDAGGYYFNGCSFGIIPKK*nnkki*inkkikk*ikk*iki*in
k*ink*ink*ikil*k

Frame C:
ci*yf*iyiliyinililik*kyyihyy*yqv*f*ily*ifhhkyminvfwh*kenvi*i
qikmhcmmkvnqdlemlkfl*emqliireiniqyvihllmvhlymmd*lnvqlmnlhlpi
qkiitlkpmkrhwlvhqvyhvfvqrfqliiwqqif*lqiplpitfh*lnklvfhqahlyl
qlelvliwvmlsklnhqlnhllnhllnhqhlhhllvvpslvyylpismvmeflm---

---iikqvfmtipmllvqlkvvvilllqlvsitmkhlkvqfvgimqplvnn*kvtlyi*p
lqmvvphlqplvnkmvlvillqcmillfhnivlvefgli*mvmvfkmlvnlvfqesqys*
smvnnqlqqvklypiqmvisnlklisvqiiiv*fllhssklvlplq*emliqliqiqivm
lsyqllimfmsllllllmlvviilmvvhlvlfqknkiikkyk*ikk*knk*knk*kyk*i
nk*ink*ink*kyyk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ874 (SHJ874Q) /CSM/SH/SHJ8-D/SHJ874Q.Seq.d/                       1249   0.0
SSG727 (SSG727Q) /CSM/SS/SSG7-B/SSG727Q.Seq.d/                       1249   0.0
SLH868 (SLH868Q) /CSM/SL/SLH8-C/SLH868Q.Seq.d/                       1249   0.0
SHL883 (SHL883Q) /CSM/SH/SHL8-D/SHL883Q.Seq.d/                       1249   0.0
SHL852 (SHL852Q) /CSM/SH/SHL8-C/SHL852Q.Seq.d/                       1249   0.0
SHL833 (SHL833Q) /CSM/SH/SHL8-B/SHL833Q.Seq.d/                       1249   0.0
SHL807 (SHL807Q) /CSM/SH/SHL8-A/SHL807Q.Seq.d/                       1249   0.0
SHL804 (SHL804Q) /CSM/SH/SHL8-A/SHL804Q.Seq.d/                       1249   0.0
SHL785 (SHL785Q) /CSM/SH/SHL7-D/SHL785Q.Seq.d/                       1249   0.0
SHL727 (SHL727Q) /CSM/SH/SHL7-B/SHL727Q.Seq.d/                       1249   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BQ022375|BQ022375.1 UI-1-BB1p-akh-h-10-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA cloneUI-1-BB1p-akh-h-10-0-UI 3', mRNA sequence.    48   0.52   1
AC150654|AC150654.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094L06, complete sequence.    36   1.0    2
AC114012|AC114012.5 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079H11, complete sequence.    36   1.1    2
AC105770|AC105770.2 Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02, complete sequence.    36   1.1    2
CV912682|CV912682.1 PF007G3 sporangia, cleaving Phytophthora infestans cDNA, mRNA sequence.    46   2.1    1
BB047825|BB047825.1 Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430562L22, 3' end partial sequence.    46   2.1    1
AC099203|AC099203.4 Rattus norvegicus clone CH230-126K21, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces.    46   2.1    1
AC099201|AC099201.6 Rattus norvegicus clone CH230-123L16, WORKING DRAFT SEQUENCE, 7 unordered pieces.    46   2.1    1
BH078802|BH078802.1 RPCI-24-244F17.TV RPCI-24 Mus musculus genomic clone RPCI-24-244F17 , DNA sequence.    46   2.1    1
AC148334|AC148334.3 Mus musculus BAC clone RP23-213L20 from chromosome 13, complete sequence.    46   2.1    1
dna update 2005.11.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...    63   2e-08
CP000686_3542(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    61   9e-08
CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC...    59   4e-07
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    59   4e-07
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei...    53   3e-05
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
AM076198_1(AM076198|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
CP000703_575(CP000703|pid:none) Staphylococcus aureus subsp. aur...    53   3e-05
protein update 2009. 4.13
PSORT 

 psg: 0.95  gvh: 0.59  alm: 0.26  top: 0.40  tms: 0.07  mit: 0.31  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.56  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: Golgi
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall

>> prediction for CHS186 is end
5' end seq. ID CHS186F
5' end seq. 
>CHS186F.Seq
ATTGTATATAATATTTTTAAATATATATATTAATATATATTAATATATTAATATTAATAA
AATGAAAATATTATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAA
TATTTCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGA
TTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTC
TTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGA
TGGTACATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAA
TCCAAAAGATTATTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACC
ATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATAC
CTTTGCCTATAACATTCCATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACT
TACAGTTAGAATTAGTGTTGATTTGGGTTATGTTGAGCAAACTCAACCACCAACTCAACC
ACCTACTCAACCACCTACTCAACCACCAACACCTCCACCATTTACTGGTAGTGCCGTCGC
TGGTTTATTATTTACCGATATCAATGGTAATGGAATTTTTGATGGANNNNNNNNNN
Length of 5' end seq. 716
3' end seq. ID CHS186Z
3' end seq. 
>CHS186Z.Seq
NNNNNNNNNNTAATCATAAAACAGGTCTTCATGACTATACCAATGCTTTTGGTGCAACTA
AAGGTGGTCGTGATATTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTT
CAATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAA
CCTCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATA
TTACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATA
TAAATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCT
TAATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATT
TCAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCC
AAGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTG
ATGCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTGATGCTG
GTGGTTATTATTTTAATGGTTGTTCATTTGGTATTATTCCAAAAAAATAAAATAATAAAA
AAATATAAATAAATAAAAAAATAAAAAAATAAATAAAAAAATAAATAAAAATATAAATAA
ATAAATAAATAAATAAATAAATAAATAAATAAATAAAAATATTATAAAAA
Length of 3' end seq. 770
Connected seq. ID CHS186P
Connected seq. 
>CHS186P.Seq
ATTGTATATAATATTTTTAAATATATATATTAATATATATTAATATATTAATATTAATAA
AATGAAAATATTATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAA
TATTTCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGA
TTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTC
TTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGA
TGGTACATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAA
TCCAAAAGATTATTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACC
ATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATAC
CTTTGCCTATAACATTCCATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACT
TACAGTTAGAATTAGTGTTGATTTGGGTTATGTTGAGCAAACTCAACCACCAACTCAACC
ACCTACTCAACCACCTACTCAACCACCAACACCTCCACCATTTACTGGTAGTGCCGTCGC
TGGTTTATTATTTACCGATATCAATGGTAATGGAATTTTTGATGGA----------TAAT
CATAAAACAGGTCTTCATGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGAT
ATTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTAT
AATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGT
CGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTAT
GATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGT
ATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAA
CAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGTT
GATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTTCC
ATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCA
ACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTGATGCTGGTGGTTATTATTTT
AATGGTTGTTCATTTGGTATTATTCCAAAAAAATAAAATAATAAAAAAATATAAATAAAT
AAAAAAATAAAAAAATAAATAAAAAAATAAATAAAAATATAAATAAATAAATAAATAAAT
AAATAAATAAATAAATAAATAAAAATATTATAAAAA
Length of connected seq. 1466
Full length Seq ID -
Full length Seq. -
Length of full length seq. -