CHS326
Library CH
(Link to library)
Clone ID CHS326
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12265-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHS326 (CHS326Q) /CSM/CH/CHS3-B/CHS326Q.Seq.d/
XXXXXXXXXXATTAAAAAACAAATAAAAAAACAACAACTAATCAAATAAAATTAAAAAAA
CTATAATTATTAATTTAAAAAAAATAATAAAAAAAAAAATGTTTAAAAAATTACTTTTCT
TTACTTTAACTTTTGCTCTCTTTGCTTTAGCAATTTGTGATAATTCAATTAAAATCACTC
AAACATTAAGTAGTGCTTGGGAAGGACATTCAACATGGAATGTAGTAATAGAAAACATTG
GAGATAAACCTATCTTTGGTGCTACCATCGTTGCCGAATCTGGTTTAAGCCTCGAAAGAC
CAGATAATCTTTGGTCATTAGATTCATTAGGTAATAATAGATTTGGTCTCCCATCTTGGA
TTACTCAAAATGGTGGTCTTAAAGCTTTCAATGGTACTCATACATTTGGTTACACTAATG
CTCAACCAACTTCAGCAGTATTCTCAGCCACTGATATTAGATATTAAATAAACCAAAAAA
AACACTAAAAAAATCCCCAAAAACNATTTAAAATACTTTATAATAATAATTAAATA
sequence update 2002. 9.10
Translated Amino Acid sequence
---lknk*knnn*SNKIKKTIIINLKKIIKKKMFKKLLFFTLTFALFALAICDNSIKITQ
TLSSAWEGHSTWNVVIENIGDKPIFGATIVAESGLSLERPDNLWSLDSLGNNRFGLPSWI
TQNGGLKAFNGTHTFGYTNAQPTSAVFSATDIRY*inqkkh*knpqkxfkilynnn*i


Translated Amino Acid sequence (All Frames)
Frame A:
---lknk*knnn*SNKIKKTIIINLKKIIKKKMFKKLLFFTLTFALFALAICDNSIKITQ
TLSSAWEGHSTWNVVIENIGDKPIFGATIVAESGLSLERPDNLWSLDSLGNNRFGLPSWI
TQNGGLKAFNGTHTFGYTNAQPTSAVFSATDIRY*inqkkh*knpqkxfkilynnn*i


Frame B:
---*ktnkktttnqiklkkl*lli*kk**kkkclknyfsll*lllsll*qfviiqlkslk
h*vvlgkdiqhgm***ktleinlslvlpslpnlv*askdqiifgh*ih*viidlvshlgl
lkmvvlklsmvlihlvtlmlnqlqqysqplildik*tkkntkkipknxlkyfiiiik


Frame C:
---kkqikkqqlik*n*knyny*fkknnkkknv*kitflyfnfcslcfsnl**fn*nhsn
ik*clgrtfnmecsnrkhwr*tylwcyhrcriwfkprktr*slvirfir***iwspildy
skwws*sfqwysyiwlh*cstnfssilsh*y*ilnkpkktlkkspkti*ntl***ln


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM627 (SSM627Q) /CSM/SS/SSM6-B/SSM627Q.Seq.d/ 704 0.0
SSJ675 (SSJ675Q) /CSM/SS/SSJ6-D/SSJ675Q.Seq.d/ 704 0.0
SSG579 (SSG579Q) /CSM/SS/SSG5-D/SSG579Q.Seq.d/ 704 0.0
SSE756 (SSE756Q) /CSM/SS/SSE7-C/SSE756Q.Seq.d/ 704 0.0
CHS326 (CHS326Q) /CSM/CH/CHS3-B/CHS326Q.Seq.d/ 704 0.0
SSC222 (SSC222Q) /CSM/SS/SSC2-A/SSC222Q.Seq.d/ 690 0.0
SSG168 (SSG168Q) /CSM/SS/SSG1-C/SSG168Q.Seq.d/ 668 0.0
SSC746 (SSC746Q) /CSM/SS/SSC7-B/SSC746Q.Seq.d/ 658 0.0
SSF357 (SSF357Q) /CSM/SS/SSF3-C/SSF357Q.Seq.d/ 640 0.0
SSG613 (SSG613Q) /CSM/SS/SSG6-A/SSG613Q.Seq.d/ 630 e-180

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC101530|AC101530.1 Mus musculus clone RP23-191F23, LOW-PASS SEQUENCE SAMPLING. 42 0.031 2
AC122256|AC122256.3 Mus musculus chromosome 7 clone RP23-178H7, complete sequence. 46 0.070 2
AC112789|AC112789.4 Mus musculus BAC clone RP23-151J21 from chromosome 7, complete sequence. 46 0.076 2
DT283771|DT283771.1 JGI_CAAV11164.rev CAAV Pimephales promelas testis 7-8 month adults, males and females pooled (H) Pimephales promelas cDNA clone CAAV11164 3', mRNA sequence. 48 0.19 1
DT275805|DT275805.1 JGI_CAAV6564.rev CAAV Pimephales promelas testis 7-8 month adults, males and females pooled (H) Pimephales promelas cDNA clone CAAV6564 3', mRNA sequence. 48 0.19 1
DT230922|DT230922.1 JGI_CAAT5104.rev CAAT Pimephales promelas brain 7-8 month adults, males and females pooled (M) Pimephales promelas cDNA clone CAAT5104 3', mRNA sequence. 48 0.19 1
DT231082|DT231082.1 JGI_CAAT5191.rev CAAT Pimephales promelas brain 7-8 month adults, males and females pooled (M) Pimephales promelas cDNA clone CAAT5191 3', mRNA sequence. 48 0.19 1
DT275431|DT275431.1 JGI_CAAV6350.rev CAAV Pimephales promelas testis 7-8 month adults, males and females pooled (H) Pimephales promelas cDNA clone CAAV6350 3', mRNA sequence. 48 0.19 1
DT228262|DT228262.1 JGI_CAAT3656.rev CAAT Pimephales promelas brain 7-8 month adults, males and females pooled (M) Pimephales promelas cDNA clone CAAT3656 3', mRNA sequence. 48 0.19 1
DT274132|DT274132.1 JGI_CAAV5592.rev CAAV Pimephales promelas testis 7-8 month adults, males and females pooled (H) Pimephales promelas cDNA clone CAAV5592 3', mRNA sequence. 48 0.19 1
dna update 2005.11.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116956_44(AC116956|pid:none) Dictyostelium discoideum chromoso... 81 2e-14
A68688_1(A68688|pid:none) Sequence 2 from Patent WO9801569. &AF... 44 0.002
AJ299386_1(AJ299386|pid:none) Heterodera schachtii partial mRNA ... 42 0.007
AF056110_1(AF056110|pid:none) Globodera rostochiensis beta-1,4-e... 37 0.30
AF004523_1(AF004523|pid:none) Globodera rostochiensis beta-1,4-e... 37 0.30
EU176871_1(EU176871|pid:none) Pratylenchus coffeae GHF5 endogluc... 37 0.40
(P22698) RecName: Full=Spore germination protein 270-11; &B3562... 35 0.89
T18270(T18270) hypothetical protein - slime mold (Dictyostelium ... 35 1.2
EF693940_1(EF693940|pid:none) Radopholus similis GHF5 endo-1,4-b... 35 1.5
AP009153_1221(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DN... 34 2.6
protein update 2009. 5.21
PSORT

psg: 0.66 gvh: 0.75 alm: 0.26 top: 0.00 tms: 0.07 mit: 0.36 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
20.0 %: endoplasmic reticulum
16.0 %: nuclear
12.0 %: Golgi
12.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: peroxisomal
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for CHS326 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHS326Z
3' end seq.
>CHS326Z.Seq
NNNNNNNNNNATTAAAAAACAAATAAAAAAACAACAACTAATCAAATAAAATTAAAAAAA
CTATAATTATTAATTTAAAAAAAATAATAAAAAAAAAAATGTTTAAAAAATTACTTTTCT
TTACTTTAACTTTTGCTCTCTTTGCTTTAGCAATTTGTGATAATTCAATTAAAATCACTC
AAACATTAAGTAGTGCTTGGGAAGGACATTCAACATGGAATGTAGTAATAGAAAACATTG
GAGATAAACCTATCTTTGGTGCTACCATCGTTGCCGAATCTGGTTTAAGCCTCGAAAGAC
CAGATAATCTTTGGTCATTAGATTCATTAGGTAATAATAGATTTGGTCTCCCATCTTGGA
TTACTCAAAATGGTGGTCTTAAAGCTTTCAATGGTACTCATACATTTGGTTACACTAATG
CTCAACCAACTTCAGCAGTATTCTCAGCCACTGATATTAGATATTAAATAAACCAAAAAA
AACACTAAAAAAATCCCCAAAAACNATTTAAAATACTTTATAATAATAATTAAATA
Length of 3' end seq. 536
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -