NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS415
Library CH
(Link to library)
Clone ID CHS415
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15269-1|Contig-U16515-1
Original site URL
Representative seq. ID CHS415P
(Link to Original site)
Representative DNA sequence 
>CHS415 (CHS415Q) /CSM/CH/CHS4-A/CHS415Q.Seq.d/
TATTGTTTAAATTTATAATGCTACAAGTTTTACAAAAATGAAAGTAATATATATTTATTT
GTTATTATTATTAGTTTGTAAATTTTTATTTGTTAAATCAAGTTGCTCTTTAAAAGTTGG
AAAAATAGAATGTACAAAAGAATTAGAAACGTTTTTATTATATAATGAAACAGTTGTCAA
TGTAAAAATGGATACAAATGGAGTAAAATATTATTTTAATGCACTCGAGTTTCCTTACAA
GAATCTGTTATGCGATTTAAATATTGATATTAAATTCACACCAGAAATCCCATCATTCCC
AAATATACCTACAACAGGTGGAGACTTCGGGTTCACCTTCAACTTTCCTTGCGACTATAG
GCGAAGAGTCAAACGAATAGAAATAGAAAGAACTATATTATCTCTCAGTTTTGATACAAG
CAAAAATCAGTTCGTTACTTACTTGAATCCAGGGTGTGGTCCTTTTCAATATTAGANNGT
AGTGGGATTCAGATTTTGAGTACAACTTATGAAACTGGTGCCATACCCAATGTACCAATT
CTCGATGATGATAAAGGTATTTTAACTATTCAAGGTAGTAATCTCTACAATACATCAATT
AAAATTTATTCAAATAACATTCTTAAAGACACCAACCCTAGTGGTGCACTAGAXXXXXXX
XXXANTAAATTCAATATTAGNATNTCTGNTGATGGTCAGNACTTTATTGNTGANATTTTC
CNATTTAAATATGAATCAGGAATTATTTATAGTGAAAACAAATCNACAGGATTTCCNAAT
GAGATGTATNTCGGNTTTGNTGNTTTTGTAATATTTANAGCATTAATTTCATTTGCCGGT
AAAAATCAGATTGAAAAATATTTTGAAGAGAGAAAATCCAGAAAAGCATTTAGATCNCTT
GATAATTTACGTTTAAAACTTNGTCAGAAACATGGTACTGAAATCGCCAAACATTACACA
TTTGGTGAACAAAGTGNTCCAAAGCCAGATAAAAGNACCTTTTATGATATAANAAAGAAA
TTATTTAGACTTCCNCTNATCAGACGTTGTTTNAAAGAACATACTGATTAAATAATAAAC
CAGCAGTAATAAATAATTTCATCCAAATCCNATAATATCCNATTTTAATTTAATTCAAAA
TCNAACC
sequence update 2002.10.25
Translated Amino Acid sequence 
yclnl*cykfyknesniylfviiisl*ific*ikllfkswknrmykrirnvfii**nscq
ckngykwskilf*ctrvslqesvmrfky*y*ihtrnpiipkytynrwrlrvhlqlslrl*
aksqtnrnrknyiisqf*YKQKSVRYLLESRVWSFSILXXSGIQILSTTYETGAIPNVPI
LDDDKGILTIQGSNLYNTSIKIYSNNILKDTNPSGAL---

---XKFNIXXSXDGQXFIXXIFXFKYESGIIYSENKSTGFPNEMYXGFXXFVIFXALISF
AGKNQIEKYFEERKSRKAFRSLDNLRLKLXQKHGTEIAKHYTFGEQSXPKPDKXTFYDIX
KKLFRLPLIRRCXKEHTD*iinqq**iissksxnixf*fnsksn
Translated Amino Acid sequence (All Frames) 
Frame A:
yclnl*cykfyknesniylfviiisl*ific*ikllfkswknrmykrirnvfii**nscq
ckngykwskilf*ctrvslqesvmrfky*y*ihtrnpiipkytynrwrlrvhlqlslrl*
aksqtnrnrknyiisqf*YKQKSVRYLLESRVWSFSILXXSGIQILSTTYETGAIPNVPI
LDDDKGILTIQGSNLYNTSIKIYSNNILKDTNPSGAL---

---XKFNIXXSXDGQXFIXXIFXFKYESGIIYSENKSTGFPNEMYXGFXXFVIFXALISF
AGKNQIEKYFEERKSRKAFRSLDNLRLKLXQKHGTEIAKHYTFGEQSXPKPDKXTFYDIX
KKLFRLPLIRRCXKEHTD*iinqq**iissksxnixf*fnsksn

Frame B:
iv*iynatsftkmkviyiylllllvckflfvksscslkvgkiectkeletfllynetvvn
vkmdtngvkyyfnalefpyknllcdlnidikftpeipsfpnipttggdfgftfnfpcdyr
rrvkrieiertilslsfdtsknqfvtylnpgcgpfqy*xvvgfrf*vqlmklvpypmyqf
smmikvf*lfkvvistihqlkfiqitflktptlvvh*---

---xnsilxxlxmvxtllxxfsxlnmnqelfivktnxqdfxmrcxsxlxxl*ylxh*fhl
pvkirlknilkrenpekhldxliiyv*nxvrnmvlkspnithlvnkvxqsqikxpfmi*x
rnyldfxxsdvvxknilik**tssnk*fhpnpiisxfnliqnxt

Frame C:
lfkfimlqvlqk*k*yificyyy*fvnfyllnqval*klek*nvqkn*krfyyimkqlsm
*kwiqme*niilmhssfltricyai*ililnshqkshhsqiylqqvetsgspstflatig
eesne*k*kelyylsvliqakissllt*iqgvvlfnirx*wdsdfeynl*nwchtqctns
r***ryfnysr**slqyin*nlfk*hs*rhqp*wctr---

---*iqy*xxx*wsxlyx*xfpi*i*irnyl**kqixrisx*dvxrxxxfcnixsinfic
r*ksd*kif*rekiqksi*ix**ftfktxsetwy*nrqtlhiw*tkxskar*kxll*yxk
eii*tsxxqtlfxrty*lnnkpavinnfiqix*ypili*fkix
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS415 (CHS415Q) /CSM/CH/CHS4-A/CHS415Q.Seq.d/                       1859   0.0
SHJ471 (SHJ471Q) /CSM/SH/SHJ4-C/SHJ471Q.Seq.d/                       1063   0.0
SHD534 (SHD534Q) /CSM/SH/SHD5-B/SHD534Q.Seq.d/                       1063   0.0
SHD454 (SHD454Q) /CSM/SH/SHD4-C/SHD454Q.Seq.d/                       1063   0.0
SHD373 (SHD373Q) /CSM/SH/SHD3-D/SHD373Q.Seq.d/                       1063   0.0
CHE868 (CHE868Q) /CSM/CH/CHE8-C/CHE868Q.Seq.d/                       1063   0.0
AHR423 (AHR423Q) /CSM/AH/AHR4-A/AHR423Q.Seq.d/                       1063   0.0
AHL138 (AHL138Q) /CSM/AH/AHL1-B/AHL138Q.Seq.d/                       1063   0.0
AHK506 (AHK506Q) /CSM/AH/AHK5-A/AHK506Q.Seq.d/                       1063   0.0
AHJ367 (AHJ367Q) /CSM/AH/AHJ3-C/AHJ367Q.Seq.d/                       1063   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds.   733   0.0    3
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    78   1e-30  8
BA000021|BA000021.3 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome.    42   0.006  17
BI807121|BI807121.1 S084C02 Stem library from Oryza sativa (3-5 leaf stage) Oryza sativa cDNA clone S084C02, mRNA sequence.    48   0.41   1
AC141664|AC141664.1 Apis mellifera clone CH224-54J14, WORKING DRAFT SEQUENCE, 18 unordered pieces.    38   0.48   7
AC099561|AC099561.2 Homo sapiens chromosome 1 clone RP11-193H16, complete sequence.    40   0.76   6
AC007017|AC007017.4 Arabidopsis thaliana chromosome 2 clone F11F19 map g6825, complete sequence.    40   0.80   3
AV730187|AV730187.1 Homo sapiens cDNA clone:HTFBLF11, 5'end, expressed in human hypothalamus.    38   1.3    2
CR388207|CR388207.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-28E16.    36   1.6    5
AC171020|AC171020.1 Bos taurus clone CH240-265J5, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46   1.6    1
dna update 2005.11.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374891_1(FJ374891|pid:none) Dictyostelium discoideum strain QS...   207   9e-75
FJ374900_1(FJ374900|pid:none) Dictyostelium discoideum strain QS...   206   2e-74
FJ374901_1(FJ374901|pid:none) Dictyostelium discoideum strain QS...   207   3e-74
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS...   230   3e-73
FJ374895_1(FJ374895|pid:none) Dictyostelium discoideum strain QS...   230   3e-73
FJ374893_1(FJ374893|pid:none) Dictyostelium discoideum strain QS...   200   3e-73
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS...   230   1e-72
FJ374915_1(FJ374915|pid:none) Dictyostelium discoideum strain QS...   200   1e-72
FJ374912_1(FJ374912|pid:none) Dictyostelium discoideum strain QS...   202   1e-72
FJ374918_1(FJ374918|pid:none) Dictyostelium discoideum strain QS...   228   3e-72
protein update 2009. 4.13
PSORT 

 psg: 0.76  gvh: 0.47  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 20.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for CHS415 is mit
5' end seq. ID CHS415F
5' end seq. 
>CHS415F.Seq
TATTGTTTAAATTTATAATGCTACAAGTTTTACAAAAATGAAAGTAATATATATTTATTT
GTTATTATTATTAGTTTGTAAATTTTTATTTGTTAAATCAAGTTGCTCTTTAAAAGTTGG
AAAAATAGAATGTACAAAAGAATTAGAAACGTTTTTATTATATAATGAAACAGTTGTCAA
TGTAAAAATGGATACAAATGGAGTAAAATATTATTTTAATGCACTCGAGTTTCCTTACAA
GAATCTGTTATGCGATTTAAATATTGATATTAAATTCACACCAGAAATCCCATCATTCCC
AAATATACCTACAACAGGTGGAGACTTCGGGTTCACCTTCAACTTTCCTTGCGACTATAG
GCGAAGAGTCAAACGAATAGAAATAGAAAGAACTATATTATCTCTCAGTTTTGATACAAG
CAAAAATCAGTTCGTTACTTACTTGAATCCAGGGTGTGGTCCTTTTCAATATTAGANNGT
AGTGGGATTCAGATTTTGAGTACAACTTATGAAACTGGTGCCATACCCAATGTACCAATT
CTCGATGATGATAAAGGTATTTTAACTATTCAAGGTAGTAATCTCTACAATACATCAATT
AAAATTTATTCAAATAACATTCTTAAAGACACCAACCCTAGTGGTGCACTAGANNNNNNN
NNN
Length of 5' end seq. 663
3' end seq. ID CHS415Z
3' end seq. 
>CHS415Z.Seq
NNNNNNNNNNANTAAATTCAATATTAGNATNTCTGNTGATGGTCAGNACTTTATTGNTGA
NATTTTCCNATTTAAATATGAATCAGGAATTATTTATAGTGAAAACAAATCNACAGGATT
TCCNAATGAGATGTATNTCGGNTTTGNTGNTTTTGTAATATTTANAGCATTAATTTCATT
TGCCGGTAAAAATCAGATTGAAAAATATTTTGAAGAGAGAAAATCCAGAAAAGCATTTAG
ATCNCTTGATAATTTACGTTTAAAACTTNGTCAGAAACATGGTACTGAAATCGCCAAACA
TTACACATTTGGTGAACAAAGTGNTCCAAAGCCAGATAAAAGNACCTTTTATGATATAAN
AAAGAAATTATTTAGACTTCCNCTNATCAGACGTTGTTTNAAAGAACATACTGATTAAAT
AATAAACCAGCAGTAATAAATAATTTCATCCAAATCCNATAATATCCNATTTTAATTTAA
TTCAAAATCNAACC
Length of 3' end seq. 494
Connected seq. ID CHS415P
Connected seq. 
>CHS415P.Seq
TATTGTTTAAATTTATAATGCTACAAGTTTTACAAAAATGAAAGTAATATATATTTATTT
GTTATTATTATTAGTTTGTAAATTTTTATTTGTTAAATCAAGTTGCTCTTTAAAAGTTGG
AAAAATAGAATGTACAAAAGAATTAGAAACGTTTTTATTATATAATGAAACAGTTGTCAA
TGTAAAAATGGATACAAATGGAGTAAAATATTATTTTAATGCACTCGAGTTTCCTTACAA
GAATCTGTTATGCGATTTAAATATTGATATTAAATTCACACCAGAAATCCCATCATTCCC
AAATATACCTACAACAGGTGGAGACTTCGGGTTCACCTTCAACTTTCCTTGCGACTATAG
GCGAAGAGTCAAACGAATAGAAATAGAAAGAACTATATTATCTCTCAGTTTTGATACAAG
CAAAAATCAGTTCGTTACTTACTTGAATCCAGGGTGTGGTCCTTTTCAATATTAGANNGT
AGTGGGATTCAGATTTTGAGTACAACTTATGAAACTGGTGCCATACCCAATGTACCAATT
CTCGATGATGATAAAGGTATTTTAACTATTCAAGGTAGTAATCTCTACAATACATCAATT
AAAATTTATTCAAATAACATTCTTAAAGACACCAACCCTAGTGGTGCACTAGA-------
---ANTAAATTCAATATTAGNATNTCTGNTGATGGTCAGNACTTTATTGNTGANATTTTC
CNATTTAAATATGAATCAGGAATTATTTATAGTGAAAACAAATCNACAGGATTTCCNAAT
GAGATGTATNTCGGNTTTGNTGNTTTTGTAATATTTANAGCATTAATTTCATTTGCCGGT
AAAAATCAGATTGAAAAATATTTTGAAGAGAGAAAATCCAGAAAAGCATTTAGATCNCTT
GATAATTTACGTTTAAAACTTNGTCAGAAACATGGTACTGAAATCGCCAAACATTACACA
TTTGGTGAACAAAGTGNTCCAAAGCCAGATAAAAGNACCTTTTATGATATAANAAAGAAA
TTATTTAGACTTCCNCTNATCAGACGTTGTTTNAAAGAACATACTGATTAAATAATAAAC
CAGCAGTAATAAATAATTTCATCCAAATCCNATAATATCCNATTTTAATTTAATTCAAAA
TCNAACC
Length of connected seq. 1137
Full length Seq ID -
Full length Seq. -
Length of full length seq. -