CHS417 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHS417
Library	CH (Link to library)
Clone ID	CHS417 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U11332-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHS4-A/CHS417Q.Seq.d/
Representative seq. ID	CHS417P (Link to Original site)
Representative DNA sequence	>CHS417 (CHS417Q) /CSM/CH/CHS4-A/CHS417Q.Seq.d/ CAACAACCTTCATCATTAAAATNTCAACTGATCAATTCGTTGATGATAAATTATTGGATA GTACAACAACGACAACAGCAGTTGAAACATCAATTCAAAGAGTAGCATCAAAAGAATGTA TTTTCTCAGATATTCCTTTATCATCAGAACCATTAATGGTATCAACAAGTGTTAAAGATC CAACTTTAGCTGCATCAACAACTAGAAAGGTTATAAAGAAAAAGGTTATAAAAACAGCAT TACCACAGGATCAACAATTAAATGGAACAAATAATACAGCAACTCTATCAACTTCACCAC CACAATCAATAGTATCATCATCAACAACAGCAACAACAGCAACAGCAACATCAACATCAA TAGGAGCACCAACAGAAGTCAAAAGAACAGTTATTGTAAAGAAAAAAATTATTAAAAAAG CAGCGGCATTATCAACTACAACTACAACCACACCACAAATCTCATCGCCACCAATTTCAA ATCCTACACCATCACCACCTTTATATGTAGAAACCGTATCATCATCAACAACAACAACAA CAACCACACCAGCAGGAAGTATCATTATCACCAAAAAAAGAAGAAACTACAATAGCACCA ACACCCAACACCAATACXXXXXXXXXXTTAACCATTTTCACTGATGATAAAAAAGGTTTT TCAAATTGTTTTGAAAATAGTACATCAATTGAAATTTGGTCAAATACTTTAGAAATTATG AAACAATTAAGAATTGATCAACATGAAAATGAAGATCAATCTGGTGAATCAAGTATTACA TTTGAAATTTCAGAATTATTTATATTGGATTTAATTGGTAAAGCAATTGGTCCATTGGAA ACTATTGAATTGGTTTGCAAATTTTCAGAAATGTTTGAAAAGAGTAAAATTGAAACTAAA TTATTATCAGATTGGATTAAATTTGGAAAATGGTCGTTGTATGATAGACCAAAGTTATCA TATGATATCTTATTACTTTTGGATAGTCATTTATGGTTATAGAAACCCTTGACCATTTCA CCTCAATTCTTAACTATGATTGGTCCTGAATTGGACCCAACTTTACCAAATAATCCATTC AAAGAATTCTTTAATAAACTTGGAACTTCAAGTCATGATAGTGGTGATAATATCGATTTT AAAATACCTTCATTCTTTGAAGATAATTCACGTAGACATTGGGGTGTAGAAACTGAATTA TCAACTGGTTCTTGTCCAATTTGTACCTTATCTTTAGCTGAAAATCCTGAATCTTCATTT TTAGGTTCAACACCCGCTACAATTATAGTATTCCCAAATTGTGGTCATTCATATCATCAT TGTTGTAT
sequence update	2002.10.25
Translated Amino Acid sequence	TTFIIKXSTDQFVDDKLLDSTTTTTAVETSIQRVASKECIFSDIPLSSEPLMVSTSVKDP TLAASTTRKVIKKKVIKTALPQDQQLNGTNNTATLSTSPPQSIVSSSTTATTATATSTSI GAPTEVKRTVIVKKKIIKKAAALSTTTTTTPQISSPPISNPTPSPPLYVETVSSSTTTTT TTPAGSIIITKKRRNYNSTNTQHQY--- ---LTIFTDDKKGFSNCFENSTSIEIWSNTLEIMKQLRIDQHENEDQSGESSITFEISEL FILDLIGKAIGPLETIELVCKFSEMFEKSKIETKLLSDWIKFGKWSLYDRPKLSYDILLL LDSHLWL*kpltispqfltmigpeldptlpnnpfkeffnklgtsshdsgdnidfkipsff ednsrrhwgvetelstgscpictlslaenpessflgstpatiivfpncghsyhhcc
Translated Amino Acid sequence (All Frames)	Frame A: qqpsslkxqlinslminywivqqrqqqlkhqfkehqknvfsqiflyhqnhwyqqvlki qllhqqlerlrkrlkqhyhrinnmeqiiqqlyqlhhhnqyhhqqqqqqqqqhqhq ehqqkskeqllrkkllkkqrhyqlqlqphhkshrhqfqilhhhhlymkpyhhqqqqq qphqqevslspkkeettiaptpntn--- ---LTIFTDDKKGFSNCFENSTSIEIWSNTLEIMKQLRIDQHENEDQSGESSITFEISEL FILDLIGKAIGPLETIELVCKFSEMFEKSKIETKLLSDWIKFGKWSLYDRPKLSYDILLL LDSHLWLkpltispqfltmigpeldptlpnnpfkeffnklgtsshdsgdnidfkipsff ednsrrhwgvetelstgscpictlslaenpessflgstpatiivfpncghsyhhcc Frame B: nnlhhnxnsir*iigynndnssninskssikrmyflrysfiirtinginkcrs nfscinnkgykekgyknsittgstikwnkysnsinftttinsiiinnsnnsnsninin rstnrsqknsyckeknykssgiinynynhttnliatnfksytittficrnriiinnnnn nhtsrkyhyhqkkkklqhqhptpi--- ---pfslmikkvfqivlkivhqlkfgqilklnnelinmkmkinlvnqvlhlkfqny lywilvkqlvhwkllnwfanfqkclkrvklklnyyqiglnlengrcmidqsyhmisyyf wiviygyrnppfhlnsllvlnwtqlyqiihsknslinlelqvmivviisilkylhsl kiihvdigvklnyqlvlvqfvpyllkilnlhfvqhplqlysqivvihiiivv Frame C: TTFIIKXSTDQFVDDKLLDSTTTTTAVETSIQRVASKECIFSDIPLSSEPLMVSTSVKDP TLAASTTRKVIKKKVIKTALPQDQQLNGTNNTATLSTSPPQSIVSSSTTATTATATSTSI GAPTEVKRTVIVKKKIIKKAAALSTTTTTTPQISSPPISNPTPSPPLYVETVSSSTTTTT TTPAGSIIITKKRRNYNSTNTQHQY--- ---nhfh**krffklfkyinnlvkyfrnyetiknstkrsiwikyyinfrii yigfnwsnwsignyiglqifrnvkenniiirldiwkmvvv*tkviiylitf gsfmvietldhftsilnydwsigpnftksiqriltwnfkswyrfntfil* rfttlgcrniinwflsnlylifsks*ififrfntrynysipklwsfisslly
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHS417 (CHS417Q) /CSM/CH/CHS4-A/CHS417Q.Seq.d/ 1453 0.0 CHQ609 (CHQ609Q) /CSM/CH/CHQ6-A/CHQ609Q.Seq.d/ 1368 0.0 AHF529 (AHF529Q) /CSM/AH/AHF5-B/AHF529Q.Seq.d/ 1364 0.0 CHS203 (CHS203Q) /CSM/CH/CHS2-A/CHS203Q.Seq.d/ 1362 0.0 AHI664 (AHI664Q) /CSM/AH/AHI6-C/AHI664Q.Seq.d/ 1348 0.0 SHK834 (SHK834Q) /CSM/SH/SHK8-B/SHK834Q.Seq.d/ 1342 0.0 SHC156 (SHC156Q) /CSM/SH/SHC1-C/SHC156Q.Seq.d/ 1340 0.0 CHN655 (CHN655Q) /CSM/CH/CHN6-C/CHN655Q.Seq.d/ 1285 0.0 CHG701 (CHG701Q) /CSM/CH/CHG7-A/CHG701Q.Seq.d/ 1279 0.0 VFE776 (VFE776Q) /CSM/VF/VFE7-D/VFE776Q.Seq.d/ 1166 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 1374 0.0 1 AF238312\|AF238312.1 Dictyostelium discoideum putative serine-threonine protein kinase MkcB (mkcB) gene, complete cds. 32 0.15 4 AG341478\|AG341478.1 Mus musculus molossinus DNA, clone:MSMg01-134N22.TJ, genomic survey sequence. 42 0.20 2 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 46 0.30 14 AC116977\|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 42 0.34 14 DT747137\|DT747137.1 EST1180986 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1W653, mRNA sequence. 48 0.48 1 DT747136\|DT747136.1 EST1180985 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1W653, mRNA sequence. 48 0.48 1 DT731465\|DT731465.1 EST1165315 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1T789, mRNA sequence. 48 0.48 1 DR924529\|DR924529.1 EST1116068 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1N260, mRNA sequence. 48 0.48 1 DR924528\|DR924528.1 EST1116067 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1N260, mRNA sequence. 48 0.48 1
dna update	2005.11.30
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value CP000589_44(CP000589\|pid:none) Ostreococcus lucimarinus CCE9901 ... 41 0.10 AY426251_1(AY426251\|pid:none) Tetrahymena thermophila strain B p... 40 0.23 U55854_11(U55854\|pid:none) Caenorhabditis elegans cosmid C04G6, ... 39 0.31 U55854_12(U55854\|pid:none) Caenorhabditis elegans cosmid C04G6, ... 39 0.31 T29599(T29599)hypothetical protein C04G6.1 - Caenorhabditis eleg... 39 0.31 CP000589_371(CP000589\|pid:none) Ostreococcus lucimarinus CCE9901... 39 0.52 AJ833642_1(AJ833642\|pid:none) Coffea canephora partial mRNA for ... 38 0.68 EF156759_1(EF156759\|pid:none) Catharanthus roseus putative MAPK2... 37 1.5 (Q40517) RecName: Full=Mitogen-activated protein kinase homolog ... 37 2.0 (Q40884) RecName: Full=Mitogen-activated protein kinase homolog ... 37 2.0
protein update	2009. 4.13
PSORT	psg: 0.55 gvh: 0.46 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00 nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: nuclear 32.0 %: cytoplasmic 12.0 %: mitochondrial 8.0 %: vesicles of secretory system 4.0 %: cytoskeletal 4.0 %: vacuolar >> prediction for CHS417 is nuc
5' end seq. ID	CHS417F
5' end seq.	>CHS417F.Seq CAACAACCTTCATCATTAAAATNTCAACTGATCAATTCGTTGATGATAAATTATTGGATA GTACAACAACGACAACAGCAGTTGAAACATCAATTCAAAGAGTAGCATCAAAAGAATGTA TTTTCTCAGATATTCCTTTATCATCAGAACCATTAATGGTATCAACAAGTGTTAAAGATC CAACTTTAGCTGCATCAACAACTAGAAAGGTTATAAAGAAAAAGGTTATAAAAACAGCAT TACCACAGGATCAACAATTAAATGGAACAAATAATACAGCAACTCTATCAACTTCACCAC CACAATCAATAGTATCATCATCAACAACAGCAACAACAGCAACAGCAACATCAACATCAA TAGGAGCACCAACAGAAGTCAAAAGAACAGTTATTGTAAAGAAAAAAATTATTAAAAAAG CAGCGGCATTATCAACTACAACTACAACCACACCACAAATCTCATCGCCACCAATTTCAA ATCCTACACCATCACCACCTTTATATGTAGAAACCGTATCATCATCAACAACAACAACAA CAACCACACCAGCAGGAAGTATCATTATCACCAAAAAAAGAAGAAACTACAATAGCACCA ACACCCAACACCAATACNNNNNNNNNN
Length of 5' end seq.	627
3' end seq. ID	CHS417Z
3' end seq.	>CHS417Z.Seq NNNNNNNNNNTTAACCATTTTCACTGATGATAAAAAAGGTTTTTCAAATTGTTTTGAAAA TAGTACATCAATTGAAATTTGGTCAAATACTTTAGAAATTATGAAACAATTAAGAATTGA TCAACATGAAAATGAAGATCAATCTGGTGAATCAAGTATTACATTTGAAATTTCAGAATT ATTTATATTGGATTTAATTGGTAAAGCAATTGGTCCATTGGAAACTATTGAATTGGTTTG CAAATTTTCAGAAATGTTTGAAAAGAGTAAAATTGAAACTAAATTATTATCAGATTGGAT TAAATTTGGAAAATGGTCGTTGTATGATAGACCAAAGTTATCATATGATATCTTATTACT TTTGGATAGTCATTTATGGTTATAGAAACCCTTGACCATTTCACCTCAATTCTTAACTAT GATTGGTCCTGAATTGGACCCAACTTTACCAAATAATCCATTCAAAGAATTCTTTAATAA ACTTGGAACTTCAAGTCATGATAGTGGTGATAATATCGATTTTAAAATACCTTCATTCTT TGAAGATAATTCACGTAGACATTGGGGTGTAGAAACTGAATTATCAACTGGTTCTTGTCC AATTTGTACCTTATCTTTAGCTGAAAATCCTGAATCTTCATTTTTAGGTTCAACACCCGC TACAATTATAGTATTCCCAAATTGTGGTCATTCATATCATCATTGTTGTAT
Length of 3' end seq.	711
Connected seq. ID	CHS417P
Connected seq.	>CHS417P.Seq CAACAACCTTCATCATTAAAATNTCAACTGATCAATTCGTTGATGATAAATTATTGGATA GTACAACAACGACAACAGCAGTTGAAACATCAATTCAAAGAGTAGCATCAAAAGAATGTA TTTTCTCAGATATTCCTTTATCATCAGAACCATTAATGGTATCAACAAGTGTTAAAGATC CAACTTTAGCTGCATCAACAACTAGAAAGGTTATAAAGAAAAAGGTTATAAAAACAGCAT TACCACAGGATCAACAATTAAATGGAACAAATAATACAGCAACTCTATCAACTTCACCAC CACAATCAATAGTATCATCATCAACAACAGCAACAACAGCAACAGCAACATCAACATCAA TAGGAGCACCAACAGAAGTCAAAAGAACAGTTATTGTAAAGAAAAAAATTATTAAAAAAG CAGCGGCATTATCAACTACAACTACAACCACACCACAAATCTCATCGCCACCAATTTCAA ATCCTACACCATCACCACCTTTATATGTAGAAACCGTATCATCATCAACAACAACAACAA CAACCACACCAGCAGGAAGTATCATTATCACCAAAAAAAGAAGAAACTACAATAGCACCA ACACCCAACACCAATAC----------TTAACCATTTTCACTGATGATAAAAAAGGTTTT TCAAATTGTTTTGAAAATAGTACATCAATTGAAATTTGGTCAAATACTTTAGAAATTATG AAACAATTAAGAATTGATCAACATGAAAATGAAGATCAATCTGGTGAATCAAGTATTACA TTTGAAATTTCAGAATTATTTATATTGGATTTAATTGGTAAAGCAATTGGTCCATTGGAA ACTATTGAATTGGTTTGCAAATTTTCAGAAATGTTTGAAAAGAGTAAAATTGAAACTAAA TTATTATCAGATTGGATTAAATTTGGAAAATGGTCGTTGTATGATAGACCAAAGTTATCA TATGATATCTTATTACTTTTGGATAGTCATTTATGGTTATAGAAACCCTTGACCATTTCA CCTCAATTCTTAACTATGATTGGTCCTGAATTGGACCCAACTTTACCAAATAATCCATTC AAAGAATTCTTTAATAAACTTGGAACTTCAAGTCATGATAGTGGTGATAATATCGATTTT AAAATACCTTCATTCTTTGAAGATAATTCACGTAGACATTGGGGTGTAGAAACTGAATTA TCAACTGGTTCTTGTCCAATTTGTACCTTATCTTTAGCTGAAAATCCTGAATCTTCATTT TTAGGTTCAACACCCGCTACAATTATAGTATTCCCAAATTGTGGTCATTCATATCATCAT TGTTGTAT
Length of connected seq.	1318
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas