>CHS419 (CHS419Q) /CSM/CH/CHS4-A/CHS419Q.Seq.d/
GACTAATATAACATACTCCAGTAAAAAATGGATCTTTATCAAGCTTTGGCCAATGCAAAT
CATCAATCTGAAAGTGTTCGTTCAGAAGCCGAATCATTTTTAACCAATGCATCACAACAA
AACTTTCCATTATTTATTCACTCATTAACATTAGAACTTACAAATGAAGAGAGAGATGTA
CAAATTCGTCAATTAGCAGGTATTGTTTTAAAGAATAGTATTCACTCTAAAAATAGCGAA
AGAAATGAAATTTTAATTAAACAATGGGCATCAATTGAACCAAATGCTAGAAACGTCATT
AAAAATACTCTTTTACAAGGTTTAGGATCACCAAAATATGAAGCACGTCACACTGTAGCT
ATTGTAATTTCACGTATTGGTCTTATTGAAATTCCATACGCAATGTGGGAAGAATTAATC
CCAGCATTATTTAAAAACATTGAAAGTGGTTCAGAAGGTATTAAACAATCTACTCTTCAA
ACACTTGGTTATATTTGTGAAGAAATTGATCCAAATGTTATGTCAAAATATTCAGATAAT
GTATTAAGAGTTATTTCAGATGGTATCAAAGATGAATCACAAAATGTAAAATTXXXXXXX
XXXATTCAACGTATTTCAAGAATCAATCAATCATCATCTACGAAGAGGCTCTCCTTGCCA
TTGGTGCCATCATCTTGGCTTTGGATGCTGATTTCGAACCTTACTTTTCAAATTTCCTTC
CAATCCTTGTAAACTTCCTCAAGAATGTCGATTTTGGTTCCGTAACAAACATTGCAATTG
GTATCGTTGGTGATTTAGCTCGTGCTTTTGGTAAGAAATTCTCTGGTGTTTGCGCTGAAA
TCGTTCCATTGATCGTTAGTGATCTCACCAATCCAAAACTCTCTATGAATGCTAAACCAA
GTGCTATCAGTTGTCTCTGTGATATCGCCATTAGTGTTGGTGCCGATTTCATTCCTTTCC
TTCCAATGGTTATGCCAATTCTTCATCAAGCCTCTACCACTGAAATCGATGATGAAGACT
TTTTAAATGAACTCCGTGAAACTATCTTCCAAACTTACACTGGTATCATTCAAGGTCTCA
AGAGTGATAATCAAATCGAAGAACTCAATCAATACATCAATCCAATGTTAGACTTTGTTG
TACTTATAAATGATGATCCAGAACGTTATGATTCTGTTACTTCTGCTGCCTTGGCCTTAC
TTGGTGATTTAGCTCAAGCTATGGGTGATAGTATTAGAAATCTTTTAAACAACAAAATAA
TTAGAGAATTTGTAAACAATGGTATTCAAAAAGGTATACCATATGCGATTATGCNATTTA
TCAATTTTTCCAAAAAAACATAATTTCA

d*ynilq*KMDLYQALANANHQSESVRSEAESFLTNASQQNFPLFIHSLTLELTNEERDV
QIRQLAGIVLKNSIHSKNSERNEILIKQWASIEPNARNVIKNTLLQGLGSPKYEARHTVA
IVISRIGLIEIPYAMWEELIPALFKNIESGSEGIKQSTLQTLGYICEEIDPNVMSKYSDN
VLRVISDGIKDESQNVK---

---STYFKNQSIIIYEEALLAIGAIILALDADFEPYFSNFLPILVNFLKNVDFGSVTNIA
IGIVGDLARAFGKKFSGVCAEIVPLIVSDLTNPKLSMNAKPSAISCLCDIAISVGADFIP
FLPMVMPILHQASTTEIDDEDFLNELRETIFQTYTGIIQGLKSDNQIEELNQYINPMLDF
VVLINDDPERYDSVTSAALALLGDLAQAMGDSIRNLLNNKIIREFVNNGIQKGIPYAIMX
FINFSKKT*f

Frame A:
d*ynilq*KMDLYQALANANHQSESVRSEAESFLTNASQQNFPLFIHSLTLELTNEERDV
QIRQLAGIVLKNSIHSKNSERNEILIKQWASIEPNARNVIKNTLLQGLGSPKYEARHTVA
IVISRIGLIEIPYAMWEELIPALFKNIESGSEGIKQSTLQTLGYICEEIDPNVMSKYSDN
VLRVISDGIKDESQNVK---

---iqrisrinqssstkrlslplvpsswlwmlisnltfqisfqsl*tssrmsilvp*qtl
qlvslvi*lvllvrnslvfalksfh*slvispiqnsl*mlnqvlsvvsvisplvlvpisf
lsfqwlcqffikplplksmmktf*mnsvklsskltlvsfkvsrviiksknsintsiqc*t
llyl*mmiqnvmilllllpwpylvi*lklwvivleif*ttk*lenl*tmvfkkvyhmrlc
xlsifpkkhnf

Frame B:
tnitysskkwifiklwpmqiinlkvfvqkpnhf*pmhhnktfhylfth*h*nlqmkremy
kfvn*qvlf*rivftlkiakemkf*lnnghqlnqmletslkilfykv*dhqnmkhvtl*l
l*fhvlvllkfhtqcgkn*sqhylktlkvvqkvlnnllfkhlvifvkkliqmlcqniqim
y*elfqmvskmnhkm*n---

---fnvfqesinhhlrrgspchwchhlgfgc*frtllfkfpsnpcklpqecrfwfrnkhc
nwyrw*fsscfw*eilwclr*nrsidr**shqsktlyec*tkcyqlsl*yrh*cwcrfhs
fpsngyansssslyh*nr**rlfk*tp*nylpnlhwyhsrsqe**snrrtqsihqsnvrl
cctyk**srtl*fcyfcclgltw*fsssyg**y*ksfkqqnn*rickqwyskryticdya
iyqffqkniis

Frame C:
li*htpvkngslssfgqckssi*kcsfrsriifnqcittklsiiyslinirtyk*rerct
nssisrycfke*ysl*k*rkk*nfn*tmgin*tkc*krh*kysftrfritki*stshcsy
cnftywsy*nsirnvgrinpsii*kh*kwfrry*tiyssntwlyl*rn*skcyvkifr*c
iksyfrwyqr*itkcki---

---STYFKNQSIIIYEEALLAIGAIILALDADFEPYFSNFLPILVNFLKNVDFGSVTNIA
IGIVGDLARAFGKKFSGVCAEIVPLIVSDLTNPKLSMNAKPSAISCLCDIAISVGADFIP
FLPMVMPILHQASTTEIDDEDFLNELRETIFQTYTGIIQGLKSDNQIEELNQYINPMLDF
VVLINDDPERYDSVTSAALALLGDLAQAMGDSIRNLLNNKIIREFVNNGIQKGIPYAIMX
FINFSKKT*f

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS419 (CHS419Q) /CSM/CH/CHS4-A/CHS419Q.Seq.d/                       2573   0.0
VHN621 (VHN621Q) /CSM/VH/VHN6-A/VHN621Q.Seq.d/                       1421   0.0
VHK714 (VHK714Q) /CSM/VH/VHK7-A/VHK714Q.Seq.d/                       1421   0.0
VHK437 (VHK437Q) /CSM/VH/VHK4-B/VHK437Q.Seq.d/                       1421   0.0
CHN342 (CHN342Q) /CSM/CH/CHN3-B/CHN342Q.Seq.d/                       1421   0.0
CHM570 (CHM570Q) /CSM/CH/CHM5-C/CHM570Q.Seq.d/                       1421   0.0
CHL167 (CHL167Q) /CSM/CH/CHL1-C/CHL167Q.Seq.d/                       1421   0.0
AHO282 (AHO282Q) /CSM/AH/AHO2-D/AHO282Q.Seq.d/                       1421   0.0
AHN566 (AHN566Q) /CSM/AH/AHN5-C/AHN566Q.Seq.d/                       1421   0.0
AHL467 (AHL467Q) /CSM/AH/AHL4-C/AHL467Q.Seq.d/                       1421   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AP002799|AP002799.3 Homo sapiens genomic DNA, chromosome 11q, clone:RP11-806N19.    38   0.27   2
AC024715|AC024715.3 Homo sapiens chromosome 11 clone RP11-201M22, WORKING DRAFT SEQUENCE, 13 unordered pieces.    38   0.27   2
AC167958|AC167958.8 Medicago truncatula clone mth2-161m16, WORKING DRAFT SEQUENCE, 17 unordered pieces.    42   1.5    4
CV748470|CV748470.1 SJL_35_004__5-4__08.T7_012.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence.    46   1.9    1
CV741544|CV741544.1 SJAL_033_76.T7 SJL Schistosoma japonicum cDNA, mRNA sequence.    46   1.9    1
CV740288|CV740288.1 SJAL_026_17.T7 SJL Schistosoma japonicum cDNA, mRNA sequence.    46   1.9    1
CV737780|CV737780.1 SJAL_010_44.T7 SJL Schistosoma japonicum cDNA, mRNA sequence.    46   1.9    1
BU802954|BU802954.1 SJFAPE03 SJF Schistosoma japonicum cDNA, mRNA sequence.    46   1.9    1
AC118385|AC118385.4 Rattus norvegicus clone CH230-42B13, WORKING DRAFT SEQUENCE, 1 ordered piece.    46   1.9    1
CL715650|CL715650.1 OR_BBa0041J09.r OR_BBa Oryza rufipogon genomic clone OR_BBa0041J09 3', genomic survey sequence.    46   1.9    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017344_109(AE017344|pid:none) Cryptococcus neoformans var. neo...   117   1e-24
BC052711_1(BC052711|pid:none) Mus musculus karyopherin (importin...   109   2e-22
(P70168) RecName: Full=Importin subunit beta-1; AltName: Full=Ka...   109   2e-22
AK314780_1(AK314780|pid:none) Homo sapiens cDNA, FLJ95650, highl...   108   5e-22
PDBN(1IBR)B MOL_ID: 1;MOL_ID: 1; MOLECULE: RAN; MOLECULE: RAN; C...   108   5e-22
(Q14974) RecName: Full=Importin subunit beta-1; AltName: Full=Ka...   108   5e-22
AK229808_1(AK229808|pid:none) Arabidopsis thaliana mRNA for hypo...   106   2e-21
(O18388) RecName: Full=Importin subunit beta; AltName: Full=Kary...   106   2e-21
CR954202_531(CR954202|pid:none) Ostreococcus tauri strain OTTH05...   105   3e-21
BX842622_14(BX842622|pid:none) Neurospora crassa DNA linkage gro...   104   8e-21

 psg: 0.76  gvh: 0.42  alm: 0.26  top: 0.17  tms: 0.20  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: endoplasmic reticulum
	 16.0 %: plasma membrane
	 12.0 %: mitochondrial
	  8.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CHS419 is end

>CHS419F.Seq
GACTAATATAACATACTCCAGTAAAAAATGGATCTTTATCAAGCTTTGGCCAATGCAAAT
CATCAATCTGAAAGTGTTCGTTCAGAAGCCGAATCATTTTTAACCAATGCATCACAACAA
AACTTTCCATTATTTATTCACTCATTAACATTAGAACTTACAAATGAAGAGAGAGATGTA
CAAATTCGTCAATTAGCAGGTATTGTTTTAAAGAATAGTATTCACTCTAAAAATAGCGAA
AGAAATGAAATTTTAATTAAACAATGGGCATCAATTGAACCAAATGCTAGAAACGTCATT
AAAAATACTCTTTTACAAGGTTTAGGATCACCAAAATATGAAGCACGTCACACTGTAGCT
ATTGTAATTTCACGTATTGGTCTTATTGAAATTCCATACGCAATGTGGGAAGAATTAATC
CCAGCATTATTTAAAAACATTGAAAGTGGTTCAGAAGGTATTAAACAATCTACTCTTCAA
ACACTTGGTTATATTTGTGAAGAAATTGATCCAAATGTTATGTCAAAATATTCAGATAAT
GTATTAAGAGTTATTTCAGATGGTATCAAAGATGAATCACAAAATGTAAAATTNNNNNNN
NNN

>CHS419Z.Seq
NNNNNNNNNNATTCAACGTATTTCAAGAATCAATCAATCATCATCTACGAAGAGGCTCTC
CTTGCCATTGGTGCCATCATCTTGGCTTTGGATGCTGATTTCGAACCTTACTTTTCAAAT
TTCCTTCCAATCCTTGTAAACTTCCTCAAGAATGTCGATTTTGGTTCCGTAACAAACATT
GCAATTGGTATCGTTGGTGATTTAGCTCGTGCTTTTGGTAAGAAATTCTCTGGTGTTTGC
GCTGAAATCGTTCCATTGATCGTTAGTGATCTCACCAATCCAAAACTCTCTATGAATGCT
AAACCAAGTGCTATCAGTTGTCTCTGTGATATCGCCATTAGTGTTGGTGCCGATTTCATT
CCTTTCCTTCCAATGGTTATGCCAATTCTTCATCAAGCCTCTACCACTGAAATCGATGAT
GAAGACTTTTTAAATGAACTCCGTGAAACTATCTTCCAAACTTACACTGGTATCATTCAA
GGTCTCAAGAGTGATAATCAAATCGAAGAACTCAATCAATACATCAATCCAATGTTAGAC
TTTGTTGTACTTATAAATGATGATCCAGAACGTTATGATTCTGTTACTTCTGCTGCCTTG
GCCTTACTTGGTGATTTAGCTCAAGCTATGGGTGATAGTATTAGAAATCTTTTAAACAAC
AAAATAATTAGAGAATTTGTAAACAATGGTATTCAAAAAGGTATACCATATGCGATTATG
CNATTTATCAATTTTTCCAAAAAAACATAATTTCA

>CHS419P.Seq
GACTAATATAACATACTCCAGTAAAAAATGGATCTTTATCAAGCTTTGGCCAATGCAAAT
CATCAATCTGAAAGTGTTCGTTCAGAAGCCGAATCATTTTTAACCAATGCATCACAACAA
AACTTTCCATTATTTATTCACTCATTAACATTAGAACTTACAAATGAAGAGAGAGATGTA
CAAATTCGTCAATTAGCAGGTATTGTTTTAAAGAATAGTATTCACTCTAAAAATAGCGAA
AGAAATGAAATTTTAATTAAACAATGGGCATCAATTGAACCAAATGCTAGAAACGTCATT
AAAAATACTCTTTTACAAGGTTTAGGATCACCAAAATATGAAGCACGTCACACTGTAGCT
ATTGTAATTTCACGTATTGGTCTTATTGAAATTCCATACGCAATGTGGGAAGAATTAATC
CCAGCATTATTTAAAAACATTGAAAGTGGTTCAGAAGGTATTAAACAATCTACTCTTCAA
ACACTTGGTTATATTTGTGAAGAAATTGATCCAAATGTTATGTCAAAATATTCAGATAAT
GTATTAAGAGTTATTTCAGATGGTATCAAAGATGAATCACAAAATGTAAAATT-------
---ATTCAACGTATTTCAAGAATCAATCAATCATCATCTACGAAGAGGCTCTCCTTGCCA
TTGGTGCCATCATCTTGGCTTTGGATGCTGATTTCGAACCTTACTTTTCAAATTTCCTTC
CAATCCTTGTAAACTTCCTCAAGAATGTCGATTTTGGTTCCGTAACAAACATTGCAATTG
GTATCGTTGGTGATTTAGCTCGTGCTTTTGGTAAGAAATTCTCTGGTGTTTGCGCTGAAA
TCGTTCCATTGATCGTTAGTGATCTCACCAATCCAAAACTCTCTATGAATGCTAAACCAA
GTGCTATCAGTTGTCTCTGTGATATCGCCATTAGTGTTGGTGCCGATTTCATTCCTTTCC
TTCCAATGGTTATGCCAATTCTTCATCAAGCCTCTACCACTGAAATCGATGATGAAGACT
TTTTAAATGAACTCCGTGAAACTATCTTCCAAACTTACACTGGTATCATTCAAGGTCTCA
AGAGTGATAATCAAATCGAAGAACTCAATCAATACATCAATCCAATGTTAGACTTTGTTG
TACTTATAAATGATGATCCAGAACGTTATGATTCTGTTACTTCTGCTGCCTTGGCCTTAC
TTGGTGATTTAGCTCAAGCTATGGGTGATAGTATTAGAAATCTTTTAAACAACAAAATAA
TTAGAGAATTTGTAAACAATGGTATTCAAAAAGGTATACCATATGCGATTATGCNATTTA
TCAATTTTTCCAAAAAAACATAATTTCA