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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS422
Library CH
(Link to library)
Clone ID CHS422
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10806-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHS422 (CHS422Q) /CSM/CH/CHS4-A/CHS422Q.Seq.d/
XXXXXXXXXXGTGTTAATTCATTGACAGCATTGAAGGTTCATTCAGTTCAAGTTCTATAG
AATCACCATTAAACTCTGCATTGGACTCGGGTTATGTCCTCTTTTATTATGGATGATAAT
TATAGTGGTAGTGGTGGTAATTCATTAATCAATGGTGGTGGTGGTGGTGATCCATTATCA
TCATTGGATAGACAGAAATTCTCACGTGTAAATAATATGGAAAAAGTTAAGATGTTATTC
GATAAGATTCGTTTAGTCTCTCATTTCTCATACGAATCTCATGTATTATCAGAGGTATTA
CCAGTTGTAATCGTAGATTTATTCCCTTCAGTCGATCAAGTTTTATCCTTTATTTTAGGT
GAATTTTTAAAACAAAGTAAAACAAACTCAAAATTAATGTGTCAAATCATTTCAAAGGTT
TTCGATTTCTTGGTTGAAAATGATACTTCTGAAAATACAAATCAACATTTAATCAACTAT
TGGATTATCATTTGTTTACAAAATTTTTTCCAAATTCAAAATCCAACTCATTGTTTATGG
GCTTTAACTTATTTATTTTTAACTTCTTCACCAAAAAGATCTTTTAAATTATTGGAATCT
GAATTTGCATCAAAAATTCAAACAAATGAAAAATTGTTTATTATTATAGCATCAGAATTT
TATTTCAATAAAGAATTATCAAAGGAAAACAAACAATTATTTAAAGATTCTTTCTCAAAA
TTAAAAATGAACCTTATATATCTTTATNAAAGTTATAAA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---vnsltalkvhsvqvl*nhh*TLHWTRVMSSFIMDDNYSGSGGNSLINGGGGGDPLSS
LDRQKFSRVNNMEKVKMLFDKIRLVSHFSYESHVLSEVLPVVIVDLFPSVDQVLSFILGE
FLKQSKTNSKLMCQIISKVFDFLVENDTSENTNQHLINYWIIICLQNFFQIQNPTHCLWA
LTYLFLTSSPKRSFKLLESEFASKIQTNEKLFIIIASEFYFNKELSKENKQLFKDSFSKL
KMNLIYLYXSYK
Translated Amino Acid sequence (All Frames) 
Frame A:
---c*fidsiegsfssssiesplnsaldsgyvlfyyg**l*w*ww*finqwwwww*siii
ig*teiltck*ygks*dvir*dsfslsflirisciirgitscnrrfipfsrssfilyfr*
ifktk*nklkinvsnhfkgfrflg*k*yf*kykstfnqlldyhlftkffpnsksnslfmg
fnlfifnfftkkif*iigi*iciknsnk*kivyyysirilfq*riikgkqtii*rfflki
knepyislxkl*


Frame B:
---vnsltalkvhsvqvl*nhh*TLHWTRVMSSFIMDDNYSGSGGNSLINGGGGGDPLSS
LDRQKFSRVNNMEKVKMLFDKIRLVSHFSYESHVLSEVLPVVIVDLFPSVDQVLSFILGE
FLKQSKTNSKLMCQIISKVFDFLVENDTSENTNQHLINYWIIICLQNFFQIQNPTHCLWA
LTYLFLTSSPKRSFKLLESEFASKIQTNEKLFIIIASEFYFNKELSKENKQLFKDSFSKL
KMNLIYLYXSYK


Frame C:
---lih*qh*rfiqfkfyritiklciglglcplllwmiiivvvvvih*smvvvvvihyhh
widrnshv*iiwkklrcysirfv*slishtnlmyyqryyql*s*iyslqsikfyplf*vn
f*nkvkqtqn*cvksfqrfsiswlkmillkiqini*stiglsfvykifskfkiqlivygl
*liyf*llhqkdllnywnlnlhqkfkqmknclll*hqnfisiknyqrktnnylkilsqn*
k*tlyifxkvi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS422 (CHS422Q) /CSM/CH/CHS4-A/CHS422Q.Seq.d/                       1164   0.0
AHO293 (AHO293Q) /CSM/AH/AHO2-D/AHO293Q.Seq.d/                       1116   0.0
VHC204 (VHC204Q) /CSM/VH/VHC2-A/VHC204Q.Seq.d/                       1114   0.0
AHB758 (AHB758Q) /CSM/AH/AHB7-C/AHB758Q.Seq.d/                       1112   0.0
AFD448 (AFD448Q) /CSM/AF/AFD4-B/AFD448Q.Seq.d/                       1112   0.0
VHB743 (VHB743Q) /CSM/VH/VHB7-B/VHB743Q.Seq.d/                       1104   0.0
AHJ876 (AHJ876Q) /CSM/AH/AHJ8-D/AHJ876Q.Seq.d/                       1100   0.0
VHF486 (VHF486Q) /CSM/VH/VHF4-D/VHF486Q.Seq.d/                       1076   0.0
SLJ759 (SLJ759Q) /CSM/SL/SLJ7-C/SLJ759Q.Seq.d/                        511   e-144
SLA429 (SLA429Q) /CSM/SL/SLA4-B/SLA429Q.Seq.d/                         44   0.003
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116920|AC116920.3 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence.   842   0.0    6
AC123017|AC123017.4 Rattus norvegicus clone CH230-282D11, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    38   0.001  6
AC026793|AC026793.4 Homo sapiens chromosome 5 clone CTD-2270I20, WORKING DRAFT SEQUENCE, 1 unordered pieces.    48   0.008  2
AC093211|AC093211.3 Homo sapiens chromosome 5 clone CTD-2020P3, complete sequence.    48   0.008  2
AC010627|AC010627.7 Homo sapiens chromosome 5 clone CTD-2165H16, complete sequence.    48   0.026  3
AC023736|AC023736.4 Drosophila melanogaster X BAC RP98-4P5 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence.    36   0.032  6
AC026749|AC026749.5 Homo sapiens chromosome 5 clone RP11-415K6, complete sequence.    48   0.044  3
AC159034|AC159034.1 Pan troglodytes chromosome UNKNOWN clone CH251-335D18, WORKING DRAFT SEQUENCE, 17 unordered pieces.    38   0.085  6
AC159382|AC159382.2 Bos taurus clone CH240-74H17, WORKING DRAFT SEQUENCE, 10 unordered pieces.    38   0.17   6
AC108677|AC108677.4 Homo sapiens 3 BAC RP11-1P14 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    34   0.17   7
dna update 2005.11.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF210456_1(EF210456|pid:none) Branchiostoma floridae huntingtin ...    81   4e-14
AF052602_1(AF052602|pid:none) Danio rerio huntingtin (HD) mRNA, ...    75   3e-12
AM238514_1(AM238514|pid:none) Ciona intestinalis mRNA for huntin...    74   5e-12
AL954671_5(AL954671|pid:none) Zebrafish DNA sequence from clone ...    73   8e-12
U24233_1(U24233|pid:none) Mus musculus huntingtin (Hd) mRNA, com...    72   2e-11
AM162277_1(AM162277|pid:none) Ciona intestinalis mRNA for huntin...    72   2e-11
(P51112) RecName: Full=Huntingtin; AltName: Full=Huntington dise...    72   2e-11
L28827_1(L28827|pid:none) Mouse Huntington's Disease gene homolo...    71   4e-11
(P42859) RecName: Full=Huntingtin; AltName: Full=Huntington dise...    71   4e-11
AX460946_1(AX460946|pid:none) Sequence 7 from Patent WO0229408.        70   5e-11
protein update 2009. 5.21
PSORT 

 psg: 0.84  gvh: 0.32  alm: 0.31  top: 0.40  tms: 0.07  mit: 0.29  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: mitochondrial
	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CHS422 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHS422Z
3' end seq. 
>CHS422Z.Seq
NNNNNNNNNNGTGTTAATTCATTGACAGCATTGAAGGTTCATTCAGTTCAAGTTCTATAG
AATCACCATTAAACTCTGCATTGGACTCGGGTTATGTCCTCTTTTATTATGGATGATAAT
TATAGTGGTAGTGGTGGTAATTCATTAATCAATGGTGGTGGTGGTGGTGATCCATTATCA
TCATTGGATAGACAGAAATTCTCACGTGTAAATAATATGGAAAAAGTTAAGATGTTATTC
GATAAGATTCGTTTAGTCTCTCATTTCTCATACGAATCTCATGTATTATCAGAGGTATTA
CCAGTTGTAATCGTAGATTTATTCCCTTCAGTCGATCAAGTTTTATCCTTTATTTTAGGT
GAATTTTTAAAACAAAGTAAAACAAACTCAAAATTAATGTGTCAAATCATTTCAAAGGTT
TTCGATTTCTTGGTTGAAAATGATACTTCTGAAAATACAAATCAACATTTAATCAACTAT
TGGATTATCATTTGTTTACAAAATTTTTTCCAAATTCAAAATCCAACTCATTGTTTATGG
GCTTTAACTTATTTATTTTTAACTTCTTCACCAAAAAGATCTTTTAAATTATTGGAATCT
GAATTTGCATCAAAAATTCAAACAAATGAAAAATTGTTTATTATTATAGCATCAGAATTT
TATTTCAATAAAGAATTATCAAAGGAAAACAAACAATTATTTAAAGATTCTTTCTCAAAA
TTAAAAATGAACCTTATATATCTTTATNAAAGTTATAAA
Length of 3' end seq. 759
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -