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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS427
Library CH
(Link to library)
Clone ID CHS427
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID CHS427P
(Link to Original site)
Representative DNA sequence 
>CHS427 (CHS427Q) /CSM/CH/CHS4-B/CHS427Q.Seq.d/
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXX
XTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGA
AATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGG
TGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGA
ACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAA
TGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACA
ACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACA
ACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACA
AGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGA
ATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACA
ATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGA
ACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCA
AAAATAATTTAATCATTNCTTNCTTTTAAAAAACTA
sequence update 2002.10.25
Translated Amino Acid sequence 
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---SPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLD
ENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQI
VEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQE
KQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhxxllkn
Translated Amino Acid sequence (All Frames) 
Frame A:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---SPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLD
ENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQI
VEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQE
KQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhxxllkn

Frame B:
nnkftik*lfflfflfkv*iieiikinikkker*kk---

---hll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmklpf*m
kmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnks
lnnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkr
nnnlltklkin*kifnmnnksknnkin*ikkkinny*nknkiknnliixxf*kt

Frame C:
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---tcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*
k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr
*tt*syqrisktrstketknstrercclle*c*ksst*igc*ig*k**tresr*efssre
ttis*pn*ksikkyst*ttnprttr*iksrkkstiirtrtkskii*sxlxfkkl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL708 (SHL708Q) /CSM/SH/SHL7-A/SHL708Q.Seq.d/                        662   0.0
SHL118 (SHL118Q) /CSM/SH/SHL1-A/SHL118Q.Seq.d/                        662   0.0
SHK152 (SHK152Q) /CSM/SH/SHK1-C/SHK152Q.Seq.d/                        662   0.0
SHG855 (SHG855Q) /CSM/SH/SHG8-C/SHG855Q.Seq.d/                        662   0.0
SHG820 (SHG820Q) /CSM/SH/SHG8-A/SHG820Q.Seq.d/                        662   0.0
SHG752 (SHG752Q) /CSM/SH/SHG7-C/SHG752Q.Seq.d/                        662   0.0
SHG502 (SHG502Q) /CSM/SH/SHG5-A/SHG502Q.Seq.d/                        662   0.0
SHD178 (SHD178Q) /CSM/SH/SHD1-D/SHD178Q.Seq.d/                        662   0.0
CHS427 (CHS427Q) /CSM/CH/CHS4-B/CHS427Q.Seq.d/                        662   0.0
CHM450 (CHM450Q) /CSM/CH/CHM4-C/CHM450Q.Seq.d/                        662   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   581   0.0    5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-25  1
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   9e-05  9
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36   0.004  8
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   0.005  14
AX344618|AX344618.1 Sequence 43 from Patent WO0200927.             42   0.011  4
BH133394|BH133394.1 ENTNI62TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38   0.017  2
AX458543|AX458543.1 Sequence 89 from Patent WO0246454.             34   0.087  6
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 3/4.    40   0.087  13
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   0.10   14
dna update 2005.11.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   235   1e-60
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   2.1
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   3.6
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    33   8.0
protein update 2009. 4.13
PSORT 

 psg: 0.64  gvh: 0.16  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for CHS427 is nuc
5' end seq. ID CHS427F
5' end seq. 
>CHS427F.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNN
N
Length of 5' end seq. 121
3' end seq. ID CHS427Z
3' end seq. 
>CHS427Z.Seq
NNNNNNNNNNTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGA
AAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTAT
TGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGA
TGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACT
TGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGA
AAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAAT
CGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAA
AATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATT
GGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGA
GAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACA
AATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGA
ACAAAATCAAAAATAATTTAATCATTNCTTNCTTTTAAAAAACTA
Length of 3' end seq. 705
Connected seq. ID CHS427P
Connected seq. 
>CHS427P.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA---------
-TCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGA
AATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGG
TGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGA
ACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAA
TGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACA
ACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACA
ACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACA
AGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGA
ATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACA
ATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGA
ACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCA
AAAATAATTTAATCATTNCTTNCTTTTAAAAAACTA
Length of connected seq. 806
Full length Seq ID -
Full length Seq. -
Length of full length seq. -