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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS430
Library CH
(Link to library)
Clone ID CHS430
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16333-1
Original site URL
Representative seq. ID CHS430P
(Link to Original site)
Representative DNA sequence 
>CHS430 (CHS430Q) /CSM/CH/CHS4-B/CHS430Q.Seq.d/
TGGCCTACTGGAAAAATTTTATTTATAGCAAAATAACTAATATATTGTAAAATAATTTTA
GAATATTTAAAAAATATTCATATAATAATAAATAAAAATGAAAGAATATAAANAAATTAT
ATTATATAGTTTTTTAGTTTTTTTAATTTTATGTTTTGCAAAACCATCTCTTTCAGATGA
CCCTTTAACAACTTCAACAACAACAACAACAGCAACTGCACTACCAACGACATCGGNAGC
ATCAACAGCAAAGGTGACAACAACAACCACAACTACAGGATCACCAGCATCAACCACAAC
TACAGGAGCACCAACATCAACTACAGGAGCATCNNCATCANCTAXXXXXXXXXXAACGTG
GTTGGNAATTNACCATGNGGTGGTTTATCNCCATACTTGGGTGGTCAAGTTCCAAACNCA
GTATGGGTTGAACTTTTAATTCCTTTCTGGTGATATTCAAGTTTA
sequence update 2002.10.25
Translated Amino Acid sequence 
gllekfyl*qnn*yivk*f*ni*kifi***IKMKEYKXIILYSFLVFLILCFAKPSLSDD
PLTTSTTTTTATALPTTSXASTAKVTTTTTTTGSPASTTTTGAPTSTTGASXSX---

---NVVGNXPXGGLSPYLGGQVPNXVWVELLIPFW*yssl
Translated Amino Acid sequence (All Frames) 
Frame A:
wptgkilfiak*liyckiileylknihiiinkneri*xnyii*ffsffnfmfcktisfr*
pfnnfnnnnnsncttndigsinskgdnnnhnyritsinhnyrstninyrsixix---

---NVVGNXPXGGLSPYLGGQVPNXVWVELLIPFW*yssl

Frame B:
gllekfyl*qnn*yivk*f*ni*kifi***IKMKEYKXIILYSFLVFLILCFAKPSLSDD
PLTTSTTTTTATALPTTSXASTAKVTTTTTTTGSPASTTTTGAPTSTTGASXSX---

---twlxixhxvvyxhtwvvkfqtqyglnf*flsgdiqv

Frame C:
aywknfiyskitnil*nnfrifkkysynnk*k*knixklyyivf*ff*fyvlqnhlfqmt
l*qlqqqqqqqlhyqrhrxhqqqr*qqqpqlqdhqhqpqlqehqhqlqehxhxl---

---rgwxxtmxwfixilgwssskxsmg*tfnsflvifkf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS430 (CHS430Q) /CSM/CH/CHS4-B/CHS430Q.Seq.d/                        391   e-108
SHJ588 (SHJ588Q) /CSM/SH/SHJ5-D/SHJ588Q.Seq.d/                        232   4e-60
SHF144 (SHF144Q) /CSM/SH/SHF1-B/SHF144Q.Seq.d/                        232   4e-60
CHS477 (CHS477Q) /CSM/CH/CHS4-D/CHS477Q.Seq.d/                        232   4e-60
CHS395 (CHS395Q) /CSM/CH/CHS3-D/CHS395Q.Seq.d/                        232   4e-60
CHS330 (CHS330Q) /CSM/CH/CHS3-B/CHS330Q.Seq.d/                        232   4e-60
CHR809 (CHR809Q) /CSM/CH/CHR8-A/CHR809Q.Seq.d/                        232   4e-60
CHR283 (CHR283Q) /CSM/CH/CHR2-D/CHR283Q.Seq.d/                        232   4e-60
CHQ875 (CHQ875Q) /CSM/CH/CHQ8-D/CHQ875Q.Seq.d/                        232   4e-60
CHQ321 (CHQ321Q) /CSM/CH/CHQ3-A/CHQ321Q.Seq.d/                        232   4e-60
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

DT505060|DT505060.1 WS01315.B21_O02 PTxD-IL-FL-A-4 Populus trichocarpa x Populus deltoides cDNA clone WS01315_O02 3', mRNA sequence.    36   0.12   2
CN518273|CN518273.1 GQ0093.B3_H17 GQ009 Populus balsamifera subsp. trichocarpa x Populus deltoides cDNA clone GQ0093_H17 5', mRNA sequence.    36   0.13   2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   0.33   2
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    36   0.35   2
AJ314911|AJ314911.2 Dictyostelium discoideum DrnA gene for putative RNaseIII.    36   0.42   2
AC126867|AC126867.4 Rattus norvegicus clone CH230-49B18, WORKING DRAFT SEQUENCE, 1 ordered piece.    46   0.64   1
AC095285|AC095285.5 Rattus norvegicus clone CH230-11A8, WORKING DRAFT SEQUENCE, 1 ordered piece.    46   0.64   1
CG000249|CG000249.1 ZUAHY32TV ZM_3.0_4.0_KB Zea mays genomic clone ZMMBPa0073F15, genomic survey sequence.    46   0.64   1
CC837377|CC837377.1 ZMMBBc0484L23r ZMMBBc Zea mays subsp. mays genomic clone ZMMBBc0484L23 3', genomic survey sequence.    46   0.64   1
AY123006|AY123006.1 Arabidopsis thaliana putative transcription factor NtWRKY4 (At5g56270) mRNA, complete cds.    46   0.64   1
dna update 2005.11.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014188_472(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    34   1.7
(Q54FS2) RecName: Full=FNIP repeat-containing protein DDB_G02906...    33   3.0
(Q54K19) RecName: Full=Myb-like protein D;                             32   6.6
AC116551_41(AC116551|pid:none) Dictyostelium discoideum chromoso...    32   8.6
AL844504_97(AL844504|pid:none) Plasmodium falciparum strain 3D7,...    32   8.6
(Q54Y90) RecName: Full=Probable serine/threonine-protein kinase ...    32   8.6
protein update 2009. 4.13
PSORT 

 psg: 1.00  gvh: 0.82  alm: 0.46  top: 0.27  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: extracellular, including cell wall
	 12.0 %: vacuolar
	  8.0 %: cytoplasmic
	  8.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for CHS430 is exc
5' end seq. ID CHS430F
5' end seq. 
>CHS430F.Seq
TGGCCTACTGGAAAAATTTTATTTATAGCAAAATAACTAATATATTGTAAAATAATTTTA
GAATATTTAAAAAATATTCATATAATAATAAATAAAAATGAAAGAATATAAANAAATTAT
ATTATATAGTTTTTTAGTTTTTTTAATTTTATGTTTTGCAAAACCATCTCTTTCAGATGA
CCCTTTAACAACTTCAACAACAACAACAACAGCAACTGCACTACCAACGACATCGGNAGC
ATCAACAGCAAAGGTGACAACAACAACCACAACTACAGGATCACCAGCATCAACCACAAC
TACAGGAGCACCAACATCAACTACAGGAGCATCNNCATCANCTANNNNNNNNNN
Length of 5' end seq. 354
3' end seq. ID CHS430Z
3' end seq. 
>CHS430Z.Seq
NNNNNNNNNNAACGTGGTTGGNAATTNACCATGNGGTGGTTTATCNCCATACTTGGGTGG
TCAAGTTCCAAACNCAGTATGGGTTGAACTTTTAATTCCTTTCTGGTGATATTCAAGTTT
A
Length of 3' end seq. 121
Connected seq. ID CHS430P
Connected seq. 
>CHS430P.Seq
TGGCCTACTGGAAAAATTTTATTTATAGCAAAATAACTAATATATTGTAAAATAATTTTA
GAATATTTAAAAAATATTCATATAATAATAAATAAAAATGAAAGAATATAAANAAATTAT
ATTATATAGTTTTTTAGTTTTTTTAATTTTATGTTTTGCAAAACCATCTCTTTCAGATGA
CCCTTTAACAACTTCAACAACAACAACAACAGCAACTGCACTACCAACGACATCGGNAGC
ATCAACAGCAAAGGTGACAACAACAACCACAACTACAGGATCACCAGCATCAACCACAAC
TACAGGAGCACCAACATCAACTACAGGAGCATCNNCATCANCTA----------AACGTG
GTTGGNAATTNACCATGNGGTGGTTTATCNCCATACTTGGGTGGTCAAGTTCCAAACNCA
GTATGGGTTGAACTTTTAATTCCTTTCTGGTGATATTCAAGTTTA
Length of connected seq. 455
Full length Seq ID -
Full length Seq. -
Length of full length seq. -