CHS433
Library CH
(Link to library)
Clone ID CHS433
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15748-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHS433 (CHS433Q) /CSM/CH/CHS4-B/CHS433Q.Seq.d/
TATTGGTATTATAAAATTAGAAATTGAACAAGATCCAGTAAAATTATGGGTTGCACCAGA
TAGTAGAGCAGCATTAGATAAAACTTATTTCGATAATAATTTTGGACCATTTTATCGTGT
TGAACAAATTATTATAACACCAAAGAATCAAACTAAATATCCAACAGTTATAGAATATGA
TTTATTATTGGAATTATTTGAAATCGAATTATCATTAATGAGTTTAGAGGCAGAATATGA
AGGAGAATTGATTACATTGGATTCACTTTGTTTCAAACCAACAAAACGTGGTTGTTTAAT
TGAAAGTACATCTGGTTTATGGCAAAGAAATATTAGTAAACTTAATTATACCCAATCAGA
GGAAGGTGTTTTAACCTATTATGAAAATTGTCAATCGAGCTTACTTCAACCAGATTGTAT
GGATTCAGTGGGAGCACCAGTTCAACCAAGAGTGGTCTTGGGTGGTTGGGAGAATAATAA
TTCCTCTGCTGCATCTGCTTTTGTTGTTACCTTCCTTTTAAATAATCCAACCGATATGGT
AAATACCGCCATGGCATGGGGAACAAGTTTGGTTGGATCATATCTCTGCCATTGCTGCCA
CTTCTGAAATTTTCGATATCACATATAGTGCCGAGCCGTTCAGTTCAAGATGAGTTATCA
CGTGAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
IGIIKLEIEQDPVKLWVAPDSRAALDKTYFDNNFGPFYRVEQIIITPKNQTKYPTVIEYD
LLLELFEIELSLMSLEAEYEGELITLDSLCFKPTKRGCLIESTSGLWQRNISKLNYTQSE
EGVLTYYENCQSSLLQPDCMDSVGAPVQPRVVLGGWENNNSSAASAFVVTFLLNNPTDMV
NTAMAWGTSLVGSYLCHCCHF*nfryhi*cravqfkmsyhv---


Translated Amino Acid sequence (All Frames)
Frame A:
ywyykirn*trsskimgctr**ssir*nlfr**fwtilsc*tnyyntkesn*isnsyri*
fiigii*nriiinefrgri*rridyigftlfqtnktwlfn*kyiwfmakky**t*lypir
grcfnll*klsieltstrlygfsgstsstksglgwlge**flccicfccylpfk*snryg
kyrhgmgnkfgwiislpllpllkfsishivpsrsvqdelsr---


Frame B:
IGIIKLEIEQDPVKLWVAPDSRAALDKTYFDNNFGPFYRVEQIIITPKNQTKYPTVIEYD
LLLELFEIELSLMSLEAEYEGELITLDSLCFKPTKRGCLIESTSGLWQRNISKLNYTQSE
EGVLTYYENCQSSLLQPDCMDSVGAPVQPRVVLGGWENNNSSAASAFVVTFLLNNPTDMV
NTAMAWGTSLVGSYLCHCCHF*nfryhi*cravqfkmsyhv---


Frame C:
lvl*n*klnkiq*nyglhqiveqh*iklisiiildhfivlnkll*hqriklniqql*nmi
yywnylksnyh**v*rqnmken*lhwihfvsnqqnvvv*lkvhlvygkeilvnliipnqr
kvf*pimkivnrayfnqivwiqwehqfnqewswvvgriiipllhlllllpsf*iiqpiw*
ippwhgeqvwldhisaiaatseifditysaepfssr*vit---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHS433 (CHS433Q) /CSM/CH/CHS4-B/CHS433Q.Seq.d/ 1318 0.0
CHJ341 (CHJ341Q) /CSM/CH/CHJ3-B/CHJ341Q.Seq.d/ 1215 0.0
AHO863 (AHO863Q) /CSM/AH/AHO8-C/AHO863Q.Seq.d/ 1203 0.0
SHE402 (SHE402Q) /CSM/SH/SHE4-A/SHE402Q.Seq.d/ 1150 0.0
SHH670 (SHH670Q) /CSM/SH/SHH6-C/SHH670Q.Seq.d/ 1110 0.0
AHM573 (AHM573Q) /CSM/AH/AHM5-D/AHM573Q.Seq.d/ 1076 0.0
CHF362 (CHF362Q) /CSM/CH/CHF3-C/CHF362Q.Seq.d/ 1074 0.0
CHK660 (CHK660Q) /CSM/CH/CHK6-C/CHK660Q.Seq.d/ 1035 0.0
SHF356 (SHF356Q) /CSM/SH/SHF3-C/SHF356Q.Seq.d/ 995 0.0
CHH472 (CHH472Q) /CSM/CH/CHH4-C/CHH472Q.Seq.d/ 985 0.0

own update 2002.10. 6
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF202726|AF202726.1 Dictyostelium discoideum NPC1 protein gene, complete cds. 1110 0.0 3
AF202725|AF202725.1 Dictyostelium discoideum NPC1 protein mRNA, complete cds. 1110 0.0 3
AE017263|AE017263.1 Mesoplasma florum L1 complete genome. 34 0.25 13
AP008006|AP008006.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 3, clone:LjT46E05, TM1343. 46 0.93 2
BX561286|BX561286.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse54h10_p1c. 46 0.95 1
BX560440|BX560440.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse4b03_p1c. 46 0.95 1
BX559700|BX559700.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse45b03_p1c. 46 0.95 1
BX556988|BX556988.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse2f09_p1c. 46 0.95 1
AQ211440|AQ211440.1 HS_3234_B2_C11_MR CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=3234 Col=22 Row=F, genomic survey sequence. 46 0.95 1
AJ286612|AJ286612.1 Acipenser ruthenus HindIII satellite DNA family, clone pRU11. 46 0.95 1
dna update 2005.11.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF202725_1(AF202725|pid:none) Dictyostelium discoideum NPC1 prot... 345 e-103
AM920435_1530(AM920435|pid:none) Penicillium chrysogenum Wiscons... 102 1e-20
BC151276_1(BC151276|pid:none) Bos taurus Niemann-Pick disease, t... 102 1e-20
(P56941) RecName: Full=Niemann-Pick C1 protein; Flags: Precursor... 100 5e-20
AB209048_1(AB209048|pid:none) Homo sapiens mRNA for Niemann-Pick... 99 8e-20
BC063302_1(BC063302|pid:none) Homo sapiens Niemann-Pick disease,... 99 8e-20
AM270237_2(AM270237|pid:none) Aspergillus niger contig An11c0200... 98 2e-19
AK154282_1(AK154282|pid:none) Mus musculus NOD-derived CD11c +ve... 98 2e-19
AF182744_1(AF182744|pid:none) Cricetulus griseus Niemann-Pick ty... 98 2e-19
AL606694_11(AL606694|pid:none) Oryza sativa genomic DNA, chromos... 97 3e-19
protein update 2009. 4.13
PSORT

psg: 0.75 gvh: 0.37 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.13 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.30 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.50 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: vesicles of secretory system
8.0 %: cytoskeletal
8.0 %: plasma membrane
4.0 %: mitochondrial

>> prediction for CHS433 is nuc

5' end seq. ID CHS433F
5' end seq.
>CHS433F.Seq
TATTGGTATTATAAAATTAGAAATTGAACAAGATCCAGTAAAATTATGGGTTGCACCAGA
TAGTAGAGCAGCATTAGATAAAACTTATTTCGATAATAATTTTGGACCATTTTATCGTGT
TGAACAAATTATTATAACACCAAAGAATCAAACTAAATATCCAACAGTTATAGAATATGA
TTTATTATTGGAATTATTTGAAATCGAATTATCATTAATGAGTTTAGAGGCAGAATATGA
AGGAGAATTGATTACATTGGATTCACTTTGTTTCAAACCAACAAAACGTGGTTGTTTAAT
TGAAAGTACATCTGGTTTATGGCAAAGAAATATTAGTAAACTTAATTATACCCAATCAGA
GGAAGGTGTTTTAACCTATTATGAAAATTGTCAATCGAGCTTACTTCAACCAGATTGTAT
GGATTCAGTGGGAGCACCAGTTCAACCAAGAGTGGTCTTGGGTGGTTGGGAGAATAATAA
TTCCTCTGCTGCATCTGCTTTTGTTGTTACCTTCCTTTTAAATAATCCAACCGATATGGT
AAATACCGCCATGGCATGGGGAACAAGTTTGGTTGGATCATATCTCTGCCATTGCTGCCA
CTTCTGAAATTTTCGATATCACATATAGTGCCGAGCCGTTCAGTTCAAGATGAGTTATCA
CGTGANNNNNNNNNN
Length of 5' end seq. 675
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -