CHS434
Library CH
(Link to library)
Clone ID CHS434
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11113-1
Original site URL
Representative seq. ID CHS434P
(Link to Original site)
Representative DNA sequence
>CHS434 (CHS434Q) /CSM/CH/CHS4-B/CHS434Q.Seq.d/
ATTATGGATGTAGAATTCACACCCAGTGACACAAATAAATTTGAAGCTAATATTACCAAA
CAACACCAAGTGATTGAATTGAATAATCAAGAAGAACAACAACAACCAGAACAACAAGAA
CAACCAGAACAACAAGAAGAACTAAAAGATAATAACGAAAAGATAAAAACTAGTGAAGAT
TCAACAACAACCACAACAACAACAGCAACAATTACAACCACTGGTGAAAACTCAATTTCA
ATTACAGTTACAGAGGCAAATAATAACACTAATCAATTAAATAAAAGCACTAGTAGCAGC
AGTAGTTTAAATAATAATAAAAACGAAGACAATAAGAGTGTTACTGCATCAATTGCACCA
TCATCACCAGTCATTGAATCATCTGCAATAGAATCAGCAATTGACTCACCATACATTTCA
TCTGCTTCAGTATTTTCAAACGCCACCAATAATAACAACAACACCACCACAACAAACGTT
GTAGTACCACCACCACAATTACTTGAGTCTTCAACTGAAAATATTACATCTGCAGCTGAA
ATTACACCAGTGACAACAACAACAACAGAAGAGACAATTAATATTCCAAAAGAATCAATA
GAAGTACAAAAACAACTAGCAGAAACAACAACAACAGCAGCAATAACTACTACCAATTCA
ACACAAGTAACATCAACAACTXXXXXXXXXXTGTGAAATTGCCATTAAAAAGATTGCACA
TGTATCAGCAAAAGCACAAAGAACCAATCTCAATGAGATTGGATTTTTAAATTTCTGTAA
GCATCCAAACATTGTCAGTTACTTAAGAAGTCATTTGGTTGATGATACCATTTGGATCGC
TATGGAGTATATGCAAGGTGGCACTTTAACCGAAGCAAGTCAAGGCCACACTTTCAATGA
GTCGTGTATCGCTTACGTTGCAAAGGGTATGTTGGAAGGCTTAATGTATTTACATGCTCA
CAACATCGTTCATAGGGATATTAAATCGGGTAACATTATGATGACCATCGATGGTAAAAT
CAAGATTGTCGATTTCGGTCTTTGTGTCGACGCAAATGAAAGAAAATTAGTACATATGGC
AGGTTCCCCTTTTTGGATGTCTCCAGAGATGATTCGTGGTGAGTCCTATGGCTGTCCAAC
CGATATTTGGAGTTTTGCAATTTGTCTTTTGGAATTGGCAAATGGTGAACCACCCCACAG
AAAATCTTCCCTCACTGCTATGTTCACCACTGCAACTGAGGGTTGTGCAGGTTTGGACAA
ACCTGAAAGATGGACCGAACACTTTACTCATTTCTTAAATCTTTGTTTAGAAATGGATCC
TTCAAAGAGATCAACTGCCGAACAACTTTTAAAACATCCTTGGATTAATTTATCTGAAAA
TCCTNAAACTANAAAAAGATTTTAGCTCAAATTTTCATTGCGAATGTTANAATCATTTAG
sequence update 2002.10.25
Translated Amino Acid sequence
IMDVEFTPSDTNKFEANITKQHQVIELNNQEEQQQPEQQEQPEQQEELKDNNEKIKTSED
STTTTTTTATITTTGENSISITVTEANNNTNQLNKSTSSSSSLNNNKNEDNKSVTASIAP
SSPVIESSAIESAIDSPYISSASVFSNATNNNNNTTTTNVVVPPPQLLESSTENITSAAE
ITPVTTTTTEETINIPKESIEVQKQLAETTTTAAITTTNSTQVTSTT---

---CEIAIKKIAHVSAKAQRTNLNEIGFLNFCKHPNIVSYLRSHLVDDTIWIAMEYMQGG
TLTEASQGHTFNESCIAYVAKGMLEGLMYLHAHNIVHRDIKSGNIMMTIDGKIKIVDFGL
CVDANERKLVHMAGSPFWMSPEMIRGESYGCPTDIWSFAICLLELANGEPPHRKSSLTAM
FTTATEGCAGLDKPERWTEHFTHFLNLCLEMDPSKRSTAEQLLKHPWINLSENPXTXKRF
*lkfslrmlxsf


Translated Amino Acid sequence (All Frames)
Frame A:
IMDVEFTPSDTNKFEANITKQHQVIELNNQEEQQQPEQQEQPEQQEELKDNNEKIKTSED
STTTTTTTATITTTGENSISITVTEANNNTNQLNKSTSSSSSLNNNKNEDNKSVTASIAP
SSPVIESSAIESAIDSPYISSASVFSNATNNNNNTTTTNVVVPPPQLLESSTENITSAAE
ITPVTTTTTEETINIPKESIEVQKQLAETTTTAAITTTNSTQVTSTT---

---CEIAIKKIAHVSAKAQRTNLNEIGFLNFCKHPNIVSYLRSHLVDDTIWIAMEYMQGG
TLTEASQGHTFNESCIAYVAKGMLEGLMYLHAHNIVHRDIKSGNIMMTIDGKIKIVDFGL
CVDANERKLVHMAGSPFWMSPEMIRGESYGCPTDIWSFAICLLELANGEPPHRKSSLTAM
FTTATEGCAGLDKPERWTEHFTHFLNLCLEMDPSKRSTAEQLLKHPWINLSENPXTXKRF
*lkfslrmlxsf

Frame B:
lwm*nshpvtqinlklilpnntk*ln*iikknnnnqnnknnqnnkkn*kiitkr*klvki
qqqpqqqqqqlqplvktqfqlqlqrqiitlin*ikalvaavv*iiiktktirvllhqlhh
hhqslnhlq*nqqlthhtfhllqyfqtppiitttppqqtl*yhhhnylslqlkilhlqlk
lhq*qqqqqkrqlifqknq*kyknn*qkqqqqqq*llpiqhk*hqq---

---vklplkrlhmyqqkhkepismrldf*isvsiqtlsvt*eviwlmipfgslwsickva
l*pkqvkatlsmsrvsltlqrvcwka*ciymlttsfigilnrvtl**psmvksrlsisvf
vstqmken*yiwqvplfgclqr*fvvspmavqpifgvlqfvfwnwqmvnhptenlpsllc
splqlrvvqvwtnlkdgpntllis*ifv*kwilqrdqlpnnf*nilgliylkilklxkdf
ssnfhcecxnhl

Frame C:
ygcrihtq*hk*i*s*yyqttpsd*ie*srrttttrttrttrttrrtkr**rkdkn**rf
nnnhnnnsnnynhw*klnfnysyrgk**h*sik*kh**qq*fk***krrq*ecycincti
itsh*iicnrisn*ltihficfsifkrhq**qqhhhnkrcsttttit*vfn*kyyics*n
ytsdnnnnrrdn*yskrinrstkttsrnnnnssnnyyqfntsninn---

---*nch*kdctciskstknqsq*dwifkfl*askhcqllkksfg**yhldrygvyarwh
fnrsksrphfq*vvyrlrckgyvgrlnvftcsqhrs*gy*ig*hyddhrw*nqdcrfrsl
crrk*kkistygrfpfldvsrddsw*vlwlsnrylefcnlsfgigkw*ttpqkifphcyv
hhcn*glcrfgqt*kmdrtlysflkslfrngsfkeincrttfktsld*fi*ksxnxkkil
aqifianvxii*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHS434 (CHS434Q) /CSM/CH/CHS4-B/CHS434Q.Seq.d/ 2309 0.0
SHC466 (SHC466Q) /CSM/SH/SHC4-C/SHC466Q.Seq.d/ 1431 0.0
AHO687 (AHO687Q) /CSM/AH/AHO6-D/AHO687Q.Seq.d/ 1431 0.0
AHM540 (AHM540Q) /CSM/AH/AHM5-B/AHM540Q.Seq.d/ 1431 0.0
AHM337 (AHM337Q) /CSM/AH/AHM3-B/AHM337Q.Seq.d/ 1431 0.0
AHH860 (AHH860Q) /CSM/AH/AHH8-C/AHH860Q.Seq.d/ 1431 0.0
AHH666 (AHH666Q) /CSM/AH/AHH6-C/AHH666Q.Seq.d/ 1431 0.0
AHF870 (AHF870Q) /CSM/AH/AHF8-C/AHF870Q.Seq.d/ 1431 0.0
AHB117 (AHB117Q) /CSM/AH/AHB1-A/AHB117Q.Seq.d/ 1431 0.0
SHK616 (SHK616Q) /CSM/SH/SHK6-A/SHK616Q.Seq.d/ 1425 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF238312|AF238312.1 Dictyostelium discoideum putative serine-threonine protein kinase MkcB (mkcB) gene, complete cds. 62 2e-28 11
U60169|U60169.1 Dictyostelium discoideum putative protein kinase MkcA (mkcA) gene, complete cds. 36 2e-04 5
DQ121070|DQ121070.1 Hucho taimen clone ZA-63 microsatellite sequence. 40 2e-04 3
BZ260408|BZ260408.1 CH230-335G9.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-335G9, DNA sequence. 40 8e-04 3
DQ121083|DQ121083.1 Hucho taimen clone ZA-78 microsatellite sequence. 44 0.001 3
AY051798|AY051798.1 Drosophila melanogaster LD31537 full length cDNA. 52 0.002 2
DU005017|DU005017.1 300586 Tomato MboI BAC Library Lycopersicon esculentum genomic clone SL_MboI0043H22 3, genomic survey sequence. 40 0.003 3
AY160100|AY160100.1 Dictyostelium discoideum nucleotide exchange factor RasGEF K (gefK) gene, complete cds. 34 0.004 6
DT732041|DT732041.1 EST1165891 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1TB28, mRNA sequence. 36 0.004 3
AF045453|AF045453.1 Dictyostelium discoideum protein kinase YakA (yakA) mRNA, complete cds. 40 0.005 3
dna update 2005.11.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF092132_1(AF092132|pid:none) Homo sapiens PAK2 mRNA, complete c... 197 7e-49
AF155651_1(AF155651|pid:none) Human P21 activated kinase-3 mRNA. 193 1e-47
AM943853_1(AM943853|pid:none) Mus musculus mRNA for PAK3c protei... 193 1e-47
AF082297_1(AF082297|pid:none) Mus musculus Cdc42/Rac effector ki... 193 1e-47
AM943852_1(AM943852|pid:none) Homo sapiens mRNA for PAK3cb prote... 193 1e-47
(Q7YQL3) RecName: Full=Serine/threonine-protein kinase PAK 3; ... 193 1e-47
(Q61036) RecName: Full=Serine/threonine-protein kinase PAK 3; ... 193 1e-47
AJ496262_1(AJ496262|pid:none) Mus musculus mRNA for p21-activate... 193 1e-47
AF485330_1(AF485330|pid:none) Xenopus laevis Pak3 serine/threoni... 192 2e-47
AM943855_1(AM943855|pid:none) Xenopus laevis mRNA for PAK3a prot... 192 2e-47
protein update 2009. 4.13
PSORT

psg: 0.75 gvh: 0.18 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for CHS434 is cyt

5' end seq. ID CHS434F
5' end seq.
>CHS434F.Seq
ATTATGGATGTAGAATTCACACCCAGTGACACAAATAAATTTGAAGCTAATATTACCAAA
CAACACCAAGTGATTGAATTGAATAATCAAGAAGAACAACAACAACCAGAACAACAAGAA
CAACCAGAACAACAAGAAGAACTAAAAGATAATAACGAAAAGATAAAAACTAGTGAAGAT
TCAACAACAACCACAACAACAACAGCAACAATTACAACCACTGGTGAAAACTCAATTTCA
ATTACAGTTACAGAGGCAAATAATAACACTAATCAATTAAATAAAAGCACTAGTAGCAGC
AGTAGTTTAAATAATAATAAAAACGAAGACAATAAGAGTGTTACTGCATCAATTGCACCA
TCATCACCAGTCATTGAATCATCTGCAATAGAATCAGCAATTGACTCACCATACATTTCA
TCTGCTTCAGTATTTTCAAACGCCACCAATAATAACAACAACACCACCACAACAAACGTT
GTAGTACCACCACCACAATTACTTGAGTCTTCAACTGAAAATATTACATCTGCAGCTGAA
ATTACACCAGTGACAACAACAACAACAGAAGAGACAATTAATATTCCAAAAGAATCAATA
GAAGTACAAAAACAACTAGCAGAAACAACAACAACAGCAGCAATAACTACTACCAATTCA
ACACAAGTAACATCAACAACTNNNNNNNNNN
Length of 5' end seq. 691
3' end seq. ID CHS434Z
3' end seq.
>CHS434Z.Seq
NNNNNNNNNNTGTGAAATTGCCATTAAAAAGATTGCACATGTATCAGCAAAAGCACAAAG
AACCAATCTCAATGAGATTGGATTTTTAAATTTCTGTAAGCATCCAAACATTGTCAGTTA
CTTAAGAAGTCATTTGGTTGATGATACCATTTGGATCGCTATGGAGTATATGCAAGGTGG
CACTTTAACCGAAGCAAGTCAAGGCCACACTTTCAATGAGTCGTGTATCGCTTACGTTGC
AAAGGGTATGTTGGAAGGCTTAATGTATTTACATGCTCACAACATCGTTCATAGGGATAT
TAAATCGGGTAACATTATGATGACCATCGATGGTAAAATCAAGATTGTCGATTTCGGTCT
TTGTGTCGACGCAAATGAAAGAAAATTAGTACATATGGCAGGTTCCCCTTTTTGGATGTC
TCCAGAGATGATTCGTGGTGAGTCCTATGGCTGTCCAACCGATATTTGGAGTTTTGCAAT
TTGTCTTTTGGAATTGGCAAATGGTGAACCACCCCACAGAAAATCTTCCCTCACTGCTAT
GTTCACCACTGCAACTGAGGGTTGTGCAGGTTTGGACAAACCTGAAAGATGGACCGAACA
CTTTACTCATTTCTTAAATCTTTGTTTAGAAATGGATCCTTCAAAGAGATCAACTGCCGA
ACAACTTTTAAAACATCCTTGGATTAATTTATCTGAAAATCCTNAAACTANAAAAAGATT
TTAGCTCAAATTTTCATTGCGAATGTTANAATCATTTAG
Length of 3' end seq. 759
Connected seq. ID CHS434P
Connected seq.
>CHS434P.Seq
ATTATGGATGTAGAATTCACACCCAGTGACACAAATAAATTTGAAGCTAATATTACCAAA
CAACACCAAGTGATTGAATTGAATAATCAAGAAGAACAACAACAACCAGAACAACAAGAA
CAACCAGAACAACAAGAAGAACTAAAAGATAATAACGAAAAGATAAAAACTAGTGAAGAT
TCAACAACAACCACAACAACAACAGCAACAATTACAACCACTGGTGAAAACTCAATTTCA
ATTACAGTTACAGAGGCAAATAATAACACTAATCAATTAAATAAAAGCACTAGTAGCAGC
AGTAGTTTAAATAATAATAAAAACGAAGACAATAAGAGTGTTACTGCATCAATTGCACCA
TCATCACCAGTCATTGAATCATCTGCAATAGAATCAGCAATTGACTCACCATACATTTCA
TCTGCTTCAGTATTTTCAAACGCCACCAATAATAACAACAACACCACCACAACAAACGTT
GTAGTACCACCACCACAATTACTTGAGTCTTCAACTGAAAATATTACATCTGCAGCTGAA
ATTACACCAGTGACAACAACAACAACAGAAGAGACAATTAATATTCCAAAAGAATCAATA
GAAGTACAAAAACAACTAGCAGAAACAACAACAACAGCAGCAATAACTACTACCAATTCA
ACACAAGTAACATCAACAACT----------TGTGAAATTGCCATTAAAAAGATTGCACA
TGTATCAGCAAAAGCACAAAGAACCAATCTCAATGAGATTGGATTTTTAAATTTCTGTAA
GCATCCAAACATTGTCAGTTACTTAAGAAGTCATTTGGTTGATGATACCATTTGGATCGC
TATGGAGTATATGCAAGGTGGCACTTTAACCGAAGCAAGTCAAGGCCACACTTTCAATGA
GTCGTGTATCGCTTACGTTGCAAAGGGTATGTTGGAAGGCTTAATGTATTTACATGCTCA
CAACATCGTTCATAGGGATATTAAATCGGGTAACATTATGATGACCATCGATGGTAAAAT
CAAGATTGTCGATTTCGGTCTTTGTGTCGACGCAAATGAAAGAAAATTAGTACATATGGC
AGGTTCCCCTTTTTGGATGTCTCCAGAGATGATTCGTGGTGAGTCCTATGGCTGTCCAAC
CGATATTTGGAGTTTTGCAATTTGTCTTTTGGAATTGGCAAATGGTGAACCACCCCACAG
AAAATCTTCCCTCACTGCTATGTTCACCACTGCAACTGAGGGTTGTGCAGGTTTGGACAA
ACCTGAAAGATGGACCGAACACTTTACTCATTTCTTAAATCTTTGTTTAGAAATGGATCC
TTCAAAGAGATCAACTGCCGAACAACTTTTAAAACATCCTTGGATTAATTTATCTGAAAA
TCCTNAAACTANAAAAAGATTTTAGCTCAAATTTTCATTGCGAATGTTANAATCATTTAG
Length of connected seq. 1430
Full length Seq ID -
Full length Seq. -
Length of full length seq. -