CHS460
Library CH
(Link to library)
Clone ID CHS460
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHS460 (CHS460Q) /CSM/CH/CHS4-C/CHS460Q.Seq.d/
XXXXXXXXXXCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGT
TCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTC
TCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGA
TGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTA
TGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATT
ACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTC
AAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACA
ACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGA
ATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTA
CTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAA
ACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAA
AAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAA
TCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTC
TTTCTTTTTAAAAAAC
sequence update 2002. 9.10
Translated Amino Acid sequence
---ERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDA
IEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSN
KNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYL
SDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQ
EKNQQLLEQEQNQK*fnhsfflkn


Translated Amino Acid sequence (All Frames)
Frame A:
---qrdymkkfiipi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkm
plnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfq
ikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst
*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnksknnkin*i
kkkinny*nknkiknnliilsf*k


Frame B:
---reti*rns*fqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trc
h*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk
*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrerccll
e*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnprttr*iks
rkkstiirtrtkskii*sfflfkk


Frame C:
---ERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDA
IEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSN
KNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYL
SDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQ
EKNQQLLEQEQNQK*fnhsfflkn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/ 765 0.0
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/ 765 0.0
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/ 765 0.0
SHL815 (SHL815Q) /CSM/SH/SHL8-A/SHL815Q.Seq.d/ 765 0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/ 765 0.0
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/ 765 0.0
SHL708 (SHL708Q) /CSM/SH/SHL7-A/SHL708Q.Seq.d/ 765 0.0
SHL647 (SHL647Q) /CSM/SH/SHL6-B/SHL647Q.Seq.d/ 765 0.0
SHL645 (SHL645Q) /CSM/SH/SHL6-B/SHL645Q.Seq.d/ 765 0.0
SHL546 (SHL546Q) /CSM/SH/SHL5-B/SHL546Q.Seq.d/ 765 0.0

own update 2004. 5.10
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 765 0.0 3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 4e-25 1
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 34 5e-06 10
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 2/4. 38 0.002 14
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 34 0.002 15
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome. 38 0.003 18
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence. 36 0.003 8
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 32 0.004 14
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 3/4. 40 0.009 13
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 34 0.010 14
dna update 2005.12. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 297 3e-79
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l... 38 0.32
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl... 38 0.42
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei... 37 0.54
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al... 37 0.71
(Q54DK4) RecName: Full=Alpha-protein kinase 1; Short=AK... 37 0.93
AM910996_565(AM910996|pid:none) Plasmodium knowlesi strain H chr... 36 1.6
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic... 36 1.6
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c... 35 2.0
AL035475_17(AL035475|pid:none) Plasmodium falciparum MAL4P2. &A... 35 2.1
protein update 2009. 5.21
PSORT

psg: 0.75 gvh: 0.17 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for CHS460 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHS460Z
3' end seq.
>CHS460Z.Seq
NNNNNNNNNNCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGT
TCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTC
TCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGA
TGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTA
TGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATT
ACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTC
AAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACA
ACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGA
ATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTA
CTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAA
ACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAA
AAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAA
TCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTC
TTTCTTTTTAAAAAAC
Length of 3' end seq. 796
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -