>CHS461 (CHS461Q) /CSM/CH/CHS4-C/CHS461Q.Seq.d/
AATATAACATACTCCAGTAAAAAATGGATCTTTATCAAGCTTTGGCCAATGCAAATCATC
AATCTGAAAGTGTTCGTTCAGAAGCCGAATCATTTTTAACCAATGCATCACAACAAAACT
TTCCATTATTTATTCACTCATTAACATTAGAACTTACAAATGAAGAGAGAGATGTACAAA
TTCGTCAATTAGCAGGTATTGTTTTAAAGAATAGTATTCACTCTAAAAATAGCGAAAGAA
ATGAAATTTTAATTAAACAATGGGCATCAATTGAACCAAATGCTAGAAACGTCATTAAAA
ATACTCTTTTACAAGGTTTAGGATCACCAAAATATGAAGCACGTCACACTGTAGCTATTG
TAATTTCACGTATTGGTCTTATTGAAATTCCATACGCAATGTGGGAAGAATTAATCCCAG
CATTATTTAAAAACATTGAAAGTGGTTCAGAAGGTATTAAACAATCTACTCTTCAAACGC
TTGGTTATATTTGTGAAGAAATTGATCCAAATGTTATGTCAAAATATTCAGATAATGTAT
TAAGAGTTATTACAGATGGTATCAAAGATGAATCACAAAATGTAAAATTAGCAGGTATTC
AAGCATTATGCTTTGCATTAGAATTTGTAAAGXXXXXXXXXXTATTCAAGAATCAATCAA
TCATCATCTACGAAGAGGCTCTCCTTGCCATTGGTGCCATCATCTTGGCTTTGNATGCTG
ATTTCGAACCTTACTTTTCAAATTTCCTTCCAATCCTTGTAAACTTCCTCAAGAATGTCG
ATTTTGGTTCCGTAACAAACATTGCAATTGGTATCGTTGGTGATTTAGCTCGTGCTTTTG
GTAAGAAATTCTCTGGTGTTTGCGCTGAAATCGTTCCATTGATCGTTAGTGATCTCACCA
ATCCAAAACTCTCTATGAATGCTAAACCAAGTGCTATCAGTTGTCTCTGTGATATCGCCA
TTAGTGTTGGTGCCGATTTCATTCCTTTCCTTCCAATGGTTATGCCAATTCTTCATCAAG
CCTCTACCACTGAAATCGATGATGAAGACTTTTTAAATGAACTCCGTGAAACTATCTTCC
AAACTTACACTGGTATCATTCAAGGTCTCAAGAGTGATAATCAAATCGAAGAACTCAATC
AATACATCAATCCAATGTTAGACTTTGTTGTACTTATAAATGATGATCCAGAACGTTATG
ATTCTGTTACTTCTGCTGCCTTGGCCTTACTTGGTGATTTAGCTCAAGCTATGGGTGATA
GTATTAGAAATCTTTTAAACAACAAAATAATTAGAGAATTTGTAAACAATGGTATTCAAA
AAGGTATACCATATGCNCATTATGCNATTTATCAATTTTTCCAAAAAAACATTA

ynilq*KMDLYQALANANHQSESVRSEAESFLTNASQQNFPLFIHSLTLELTNEERDVQI
RQLAGIVLKNSIHSKNSERNEILIKQWASIEPNARNVIKNTLLQGLGSPKYEARHTVAIV
ISRIGLIEIPYAMWEELIPALFKNIESGSEGIKQSTLQTLGYICEEIDPNVMSKYSDNVL
RVITDGIKDESQNVKLAGIQALCFALEFVK---

---FKNQSIIIYEEALLAIGAIILALXADFEPYFSNFLPILVNFLKNVDFGSVTNIAIGI
VGDLARAFGKKFSGVCAEIVPLIVSDLTNPKLSMNAKPSAISCLCDIAISVGADFIPFLP
MVMPILHQASTTEIDDEDFLNELRETIFQTYTGIIQGLKSDNQIEELNQYINPMLDFVVL
INDDPERYDSVTSAALALLGDLAQAMGDSIRNLLNNKIIREFVNNGIQKGIPYAHYAIYQ
FFQKNI

Frame A:
nitysskkwifiklwpmqiinlkvfvqkpnhf*pmhhnktfhylfth*h*nlqmkremyk
fvn*qvlf*rivftlkiakemkf*lnnghqlnqmletslkilfykv*dhqnmkhvtl*ll
*fhvlvllkfhtqcgkn*sqhylktlkvvqkvlnnllfkrlvifvkkliqmlcqniqimy
*ellqmvskmnhkm*n*qvfkhyalh*nl*---

---ysrinqssstkrlslplvpsswlxmlisnltfqisfqsl*tssrmsilvp*qtlqlv
slvi*lvllvrnslvfalksfh*slvispiqnsl*mlnqvlsvvsvisplvlvpisflsf
qwlcqffikplplksmmktf*mnsvklsskltlvsfkvsrviiksknsintsiqc*tlly
l*mmiqnvmilllllpwpylvi*lklwvivleif*ttk*lenl*tmvfkkvyhmximxfi
nfskktl

Frame B:
i*htpvkngslssfgqckssi*kcsfrsriifnqcittklsiiyslinirtyk*rerctn
ssisrycfke*ysl*k*rkk*nfn*tmgin*tkc*krh*kysftrfritki*stshcsyc
nftywsy*nsirnvgrinpsii*kh*kwfrry*tiyssnawlyl*rn*skcyvkifr*ci
ksyyrwyqr*itkckisryssimlcirick---

---iqesinhhlrrgspchwchhlgfxc*frtllfkfpsnpcklpqecrfwfrnkhcnwy
rw*fsscfw*eilwclr*nrsidr**shqsktlyec*tkcyqlsl*yrh*cwcrfhsfps
ngyansssslyh*nr**rlfk*tp*nylpnlhwyhsrsqe**snrrtqsihqsnvrlcct
yk**srtl*fcyfcclgltw*fsssyg**y*ksfkqqnn*rickqwyskryticxlcxls
ifpkkh

Frame C:
ynilq*KMDLYQALANANHQSESVRSEAESFLTNASQQNFPLFIHSLTLELTNEERDVQI
RQLAGIVLKNSIHSKNSERNEILIKQWASIEPNARNVIKNTLLQGLGSPKYEARHTVAIV
ISRIGLIEIPYAMWEELIPALFKNIESGSEGIKQSTLQTLGYICEEIDPNVMSKYSDNVL
RVITDGIKDESQNVKLAGIQALCFALEFVK---

---FKNQSIIIYEEALLAIGAIILALXADFEPYFSNFLPILVNFLKNVDFGSVTNIAIGI
VGDLARAFGKKFSGVCAEIVPLIVSDLTNPKLSMNAKPSAISCLCDIAISVGADFIPFLP
MVMPILHQASTTEIDDEDFLNELRETIFQTYTGIIQGLKSDNQIEELNQYINPMLDFVVL
INDDPERYDSVTSAALALLGDLAQAMGDSIRNLLNNKIIREFVNNGIQKGIPYAHYAIYQ
FFQKNI

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS461 (CHS461Q) /CSM/CH/CHS4-C/CHS461Q.Seq.d/                       2623   0.0
VHD795 (VHD795Q) /CSM/VH/VHD7-D/VHD795Q.Seq.d/                       1409   0.0
CHR745 (CHR745Q) /CSM/CH/CHR7-B/CHR745Q.Seq.d/                       1409   0.0
AHH358 (AHH358Q) /CSM/AH/AHH3-C/AHH358Q.Seq.d/                       1409   0.0
VHQ201 (VHQ201Q) /CSM/VH/VHQ2-A/VHQ201Q.Seq.d/                       1403   0.0
CHG795 (CHG795Q) /CSM/CH/CHG7-D/CHG795Q.Seq.d/                       1403   0.0
AHM311 (AHM311Q) /CSM/AH/AHM3-A/AHM311Q.Seq.d/                       1403   0.0
VHO468 (VHO468Q) /CSM/VH/VHO4-C/VHO468Q.Seq.d/                       1402   0.0
VHI893 (VHI893Q) /CSM/VH/VHI8-D/VHI893Q.Seq.d/                       1402   0.0
VHD567 (VHD567Q) /CSM/VH/VHD5-C/VHD567Q.Seq.d/                       1402   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AP002799|AP002799.3 Homo sapiens genomic DNA, chromosome 11q, clone:RP11-806N19.    38   0.27   2
AC024715|AC024715.3 Homo sapiens chromosome 11 clone RP11-201M22, WORKING DRAFT SEQUENCE, 13 unordered pieces.    38   0.27   2
AL358112|AL358112.20 Human DNA sequence from clone RP11-311B1 on chromosome 6.    44   1.0    5
AC167958|AC167958.8 Medicago truncatula clone mth2-161m16, WORKING DRAFT SEQUENCE, 17 unordered pieces.    42   1.6    4
CV748470|CV748470.1 SJL_35_004__5-4__08.T7_012.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence.    46   2.0    1
CV741544|CV741544.1 SJAL_033_76.T7 SJL Schistosoma japonicum cDNA, mRNA sequence.    46   2.0    1
CV740288|CV740288.1 SJAL_026_17.T7 SJL Schistosoma japonicum cDNA, mRNA sequence.    46   2.0    1
CV737780|CV737780.1 SJAL_010_44.T7 SJL Schistosoma japonicum cDNA, mRNA sequence.    46   2.0    1
BU802954|BU802954.1 SJFAPE03 SJF Schistosoma japonicum cDNA, mRNA sequence.    46   2.0    1
AC118385|AC118385.4 Rattus norvegicus clone CH230-42B13, WORKING DRAFT SEQUENCE, 1 ordered piece.    46   2.0    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017344_109(AE017344|pid:none) Cryptococcus neoformans var. neo...   129   2e-28
BC052711_1(BC052711|pid:none) Mus musculus karyopherin (importin...   122   4e-26
(P70168) RecName: Full=Importin subunit beta-1; AltName: Full=Ka...   122   4e-26
AK314780_1(AK314780|pid:none) Homo sapiens cDNA, FLJ95650, highl...   120   8e-26
PDBN(1IBR)B MOL_ID: 1;MOL_ID: 1; MOLECULE: RAN; MOLECULE: RAN; C...   120   8e-26
(Q14974) RecName: Full=Importin subunit beta-1; AltName: Full=Ka...   120   8e-26
FM992688_205(FM992688|pid:none) Candida dubliniensis CD36 chromo...   115   3e-24
BX842622_14(BX842622|pid:none) Neurospora crassa DNA linkage gro...   115   5e-24
CR382135_96(CR382135|pid:none) Debaryomyces hansenii strain CBS7...   113   2e-23
AY303543_1(AY303543|pid:none) Emericella nidulans putative karyo...   112   3e-23

 psg: 0.76  gvh: 0.42  alm: 0.26  top: 0.17  tms: 0.20  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 16.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  8.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic
	  4.0 %: vesicles of secretory system

>> prediction for CHS461 is end

>CHS461F.Seq
AATATAACATACTCCAGTAAAAAATGGATCTTTATCAAGCTTTGGCCAATGCAAATCATC
AATCTGAAAGTGTTCGTTCAGAAGCCGAATCATTTTTAACCAATGCATCACAACAAAACT
TTCCATTATTTATTCACTCATTAACATTAGAACTTACAAATGAAGAGAGAGATGTACAAA
TTCGTCAATTAGCAGGTATTGTTTTAAAGAATAGTATTCACTCTAAAAATAGCGAAAGAA
ATGAAATTTTAATTAAACAATGGGCATCAATTGAACCAAATGCTAGAAACGTCATTAAAA
ATACTCTTTTACAAGGTTTAGGATCACCAAAATATGAAGCACGTCACACTGTAGCTATTG
TAATTTCACGTATTGGTCTTATTGAAATTCCATACGCAATGTGGGAAGAATTAATCCCAG
CATTATTTAAAAACATTGAAAGTGGTTCAGAAGGTATTAAACAATCTACTCTTCAAACGC
TTGGTTATATTTGTGAAGAAATTGATCCAAATGTTATGTCAAAATATTCAGATAATGTAT
TAAGAGTTATTACAGATGGTATCAAAGATGAATCACAAAATGTAAAATTAGCAGGTATTC
AAGCATTATGCTTTGCATTAGAATTTGTAAAGNNNNNNNNNN

>CHS461Z.Seq
NNNNNNNNNNTATTCAAGAATCAATCAATCATCATCTACGAAGAGGCTCTCCTTGCCATT
GGTGCCATCATCTTGGCTTTGNATGCTGATTTCGAACCTTACTTTTCAAATTTCCTTCCA
ATCCTTGTAAACTTCCTCAAGAATGTCGATTTTGGTTCCGTAACAAACATTGCAATTGGT
ATCGTTGGTGATTTAGCTCGTGCTTTTGGTAAGAAATTCTCTGGTGTTTGCGCTGAAATC
GTTCCATTGATCGTTAGTGATCTCACCAATCCAAAACTCTCTATGAATGCTAAACCAAGT
GCTATCAGTTGTCTCTGTGATATCGCCATTAGTGTTGGTGCCGATTTCATTCCTTTCCTT
CCAATGGTTATGCCAATTCTTCATCAAGCCTCTACCACTGAAATCGATGATGAAGACTTT
TTAAATGAACTCCGTGAAACTATCTTCCAAACTTACACTGGTATCATTCAAGGTCTCAAG
AGTGATAATCAAATCGAAGAACTCAATCAATACATCAATCCAATGTTAGACTTTGTTGTA
CTTATAAATGATGATCCAGAACGTTATGATTCTGTTACTTCTGCTGCCTTGGCCTTACTT
GGTGATTTAGCTCAAGCTATGGGTGATAGTATTAGAAATCTTTTAAACAACAAAATAATT
AGAGAATTTGTAAACAATGGTATTCAAAAAGGTATACCATATGCNCATTATGCNATTTAT
CAATTTTTCCAAAAAAACATTA

>CHS461P.Seq
AATATAACATACTCCAGTAAAAAATGGATCTTTATCAAGCTTTGGCCAATGCAAATCATC
AATCTGAAAGTGTTCGTTCAGAAGCCGAATCATTTTTAACCAATGCATCACAACAAAACT
TTCCATTATTTATTCACTCATTAACATTAGAACTTACAAATGAAGAGAGAGATGTACAAA
TTCGTCAATTAGCAGGTATTGTTTTAAAGAATAGTATTCACTCTAAAAATAGCGAAAGAA
ATGAAATTTTAATTAAACAATGGGCATCAATTGAACCAAATGCTAGAAACGTCATTAAAA
ATACTCTTTTACAAGGTTTAGGATCACCAAAATATGAAGCACGTCACACTGTAGCTATTG
TAATTTCACGTATTGGTCTTATTGAAATTCCATACGCAATGTGGGAAGAATTAATCCCAG
CATTATTTAAAAACATTGAAAGTGGTTCAGAAGGTATTAAACAATCTACTCTTCAAACGC
TTGGTTATATTTGTGAAGAAATTGATCCAAATGTTATGTCAAAATATTCAGATAATGTAT
TAAGAGTTATTACAGATGGTATCAAAGATGAATCACAAAATGTAAAATTAGCAGGTATTC
AAGCATTATGCTTTGCATTAGAATTTGTAAAG----------TATTCAAGAATCAATCAA
TCATCATCTACGAAGAGGCTCTCCTTGCCATTGGTGCCATCATCTTGGCTTTGNATGCTG
ATTTCGAACCTTACTTTTCAAATTTCCTTCCAATCCTTGTAAACTTCCTCAAGAATGTCG
ATTTTGGTTCCGTAACAAACATTGCAATTGGTATCGTTGGTGATTTAGCTCGTGCTTTTG
GTAAGAAATTCTCTGGTGTTTGCGCTGAAATCGTTCCATTGATCGTTAGTGATCTCACCA
ATCCAAAACTCTCTATGAATGCTAAACCAAGTGCTATCAGTTGTCTCTGTGATATCGCCA
TTAGTGTTGGTGCCGATTTCATTCCTTTCCTTCCAATGGTTATGCCAATTCTTCATCAAG
CCTCTACCACTGAAATCGATGATGAAGACTTTTTAAATGAACTCCGTGAAACTATCTTCC
AAACTTACACTGGTATCATTCAAGGTCTCAAGAGTGATAATCAAATCGAAGAACTCAATC
AATACATCAATCCAATGTTAGACTTTGTTGTACTTATAAATGATGATCCAGAACGTTATG
ATTCTGTTACTTCTGCTGCCTTGGCCTTACTTGGTGATTTAGCTCAAGCTATGGGTGATA
GTATTAGAAATCTTTTAAACAACAAAATAATTAGAGAATTTGTAAACAATGGTATTCAAA
AAGGTATACCATATGCNCATTATGCNATTTATCAATTTTTCCAAAAAAACATTA