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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS462
Library CH
(Link to library)
Clone ID CHS462
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16313-1
Original site URL
Representative seq. ID CHS462P
(Link to Original site)
Representative DNA sequence 
>CHS462 (CHS462Q) /CSM/CH/CHS4-C/CHS462Q.Seq.d/
ATAATTATCCCTTAAAATAATAACAATAAAATAGATTTTTACATTTATTTTTATTTATTT
CATATTTATTTTTGTTGGAAAAAAAAGAAAAAAAAGAAAAAAAGAAAAAAAAAAXXXXXX
XXXXTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAATACTGGTATT
TGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTGGTGGAACT
ATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAATTGGTCAA
AAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTGGTGGTATT
CCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTCATTACACA
GAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGAGGAATGGAA
TGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTAGATTGT
TTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAAATCCAAAT
TTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCAC
sequence update 2002.10.25
Translated Amino Acid sequence 
iiip*NNNNKIDFYIYFYLFHIYFCWKKKKKKKKRKKK---

---NCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCPIG
QKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKRGM
ECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCCKF
Translated Amino Acid sequence (All Frames) 
Frame A:
iiip*NNNNKIDFYIYFYLFHIYFCWKKKKKKKKRKKK---

---*ivmiitivlkisv*ilvfvkiiqltvvlhhhqfqlvelslqpllvyhklsvivvql
vknvy*smvmkfvlnqqplvvfqn*llvvlvqqlaglqvitqnqvqvihiyvidiivkee
wnvmllmvfqnvyhqttnv*iv*ifivrdkvispvlwlkiqisflvnivvmvnhvvns

Frame B:
*lslkiitik*iftfifiyfififvgkkrkkrkkekk---

---kl****rly*r*vfkywylsk*sn*rlcytitsfnwwnypsnhywcits*v*llsnw
skmfisqws*nly*tsnhwwysrinywlcwynnwqgyrslhriryr*stfm**isl*krn
gmscc*wcsrmftiklqmfrlfrssl*etr*fhlfyg*kskfhf**t*llw*iml*ih

Frame C:
nyplk**q*nrflhlflfisylfllekkekkekkkkk---

---NCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCPIG
QKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKRGM
ECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCCKF
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL803 (SHL803Q) /CSM/SH/SHL8-A/SHL803Q.Seq.d/                       1043   0.0
SHL613 (SHL613Q) /CSM/SH/SHL6-A/SHL613Q.Seq.d/                       1043   0.0
SHL457 (SHL457Q) /CSM/SH/SHL4-C/SHL457Q.Seq.d/                       1043   0.0
SHL385 (SHL385Q) /CSM/SH/SHL3-D/SHL385Q.Seq.d/                       1043   0.0
SHL169 (SHL169Q) /CSM/SH/SHL1-C/SHL169Q.Seq.d/                       1043   0.0
SHK884 (SHK884Q) /CSM/SH/SHK8-D/SHK884Q.Seq.d/                       1043   0.0
SHK869 (SHK869Q) /CSM/SH/SHK8-C/SHK869Q.Seq.d/                       1043   0.0
SHK770 (SHK770Q) /CSM/SH/SHK7-C/SHK770Q.Seq.d/                       1043   0.0
SHK535 (SHK535Q) /CSM/SH/SHK5-B/SHK535Q.Seq.d/                       1043   0.0
SHJ893 (SHJ893Q) /CSM/SH/SHJ8-D/SHJ893Q.Seq.d/                       1043   0.0
own update 2004. 5.10
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CR385071|CR385071.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-245B7.    50   0.058  1
CR936281|CR936281.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    50   0.058  1
DT056953|DT056953.1 AGENCOURT_55789447 NICHD_XGC_FaBN Xenopus laevis cDNA clone IMAGE:8075049 3', mRNA sequence.    32   0.16   3
AC149417|AC149417.1 Phakopsora pachyrhizi clone JGIAFNA-77J13, complete sequence.    46   0.91   1
AC020547|AC020547.7 Homo sapiens BAC clone RP11-134F3 from 2, complete sequence.    46   0.91   1
AL161506|AL161506.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 18.    42   1.3    3
AC168497|AC168497.2 Strongylocentrotus purpuratus clone R3-3117D9, WORKING DRAFT SEQUENCE, 23 unordered pieces.    34   1.8    2
CV752175|CV752175.1 SJL6-009_A06_SJL6-009A06-T3_039.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   3.6    1
CV752026|CV752026.1 SJL6-007_B08_SJL6-007B08-T3_063.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   3.6    1
CV739281|CV739281.1 SJAL_019_73.T3 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   3.6    1
dna update 2005.12. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                302   5e-81
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                177   2e-43
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa...    52   1e-05
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    42   0.015
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    41   0.033
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    41   0.033
AB011475_1(AB011475|pid:none) Arabidopsis thaliana genomic DNA, ...    37   0.36
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg...    37   0.62
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    37   0.62
BX883044_5(BX883044|pid:none) Rattus norvegicus chromosome 20, m...    34   3.1
protein update 2009. 4.13
PSORT 

 psg: 0.91  gvh: 0.37  alm: 0.47  top: 0.43  tms: 0.00  mit: 0.18  mip: 0.06
 nuc: 0.36  erl: 0.00  erm: 0.20  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.50  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: plasma membrane
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal

>> prediction for CHS462 is nuc
5' end seq. ID CHS462F
5' end seq. 
>CHS462F.Seq
ATAATTATCCCTTAAAATAATAACAATAAAATAGATTTTTACATTTATTTTTATTTATTT
CATATTTATTTTTGTTGGAAAAAAAAGAAAAAAAAGAAAAAAAGAAAAAAAAAANNNNNN
NNNN
Length of 5' end seq. 124
3' end seq. ID CHS462Z
3' end seq. 
>CHS462Z.Seq
NNNNNNNNNNTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAATACT
GGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTGGT
GGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAATT
GGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTGGT
GGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTCAT
TACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGAGGA
ATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTA
GATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAAAT
CCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCAC
Length of 3' end seq. 536
Connected seq. ID CHS462P
Connected seq. 
>CHS462P.Seq
ATAATTATCCCTTAAAATAATAACAATAAAATAGATTTTTACATTTATTTTTATTTATTT
CATATTTATTTTTGTTGGAAAAAAAAGAAAAAAAAGAAAAAAAGAAAAAAAAAA------
----TAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAATACTGGTATT
TGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTGGTGGAACT
ATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAATTGGTCAA
AAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTGGTGGTATT
CCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTCATTACACA
GAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGAGGAATGGAA
TGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTAGATTGT
TTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAAATCCAAAT
TTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCAC
Length of connected seq. 640
Full length Seq ID -
Full length Seq. -
Length of full length seq. -