CHS475
Library CH
(Link to library)
Clone ID CHS475
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11507-1|Contig-U16256-1
Original site URL
Representative seq. ID CHS475P
(Link to Original site)
Representative DNA sequence
>CHS475 (CHS475Q) /CSM/CH/CHS4-D/CHS475Q.Seq.d/
AATCATTTAAATAATAAAAATAATAATTAATAATAATAAAAATAATAATAACAAATTGAA
ATTAATAAATCACACCAAAAAAACGTACACACACAAAAATAATAATAAAATGAAAAAGAC
TTTCATATTTTTATACTGTGTGGTTCTTTTTATTTCTACCACTCTAGCAGTTGAAATGAA
AAAAACTCAAGATTTTAATTTAAGAATTTTCGATCAACATCCAAAATATAATAACAATTT
TGAGCCTGAAAATGGTGTTTTAACAGTAAATCTTGTAAAATCAATTCTAAATGAAACCAC
TGGTATTCCAGAGTTAACCACAATGTCAAATCTTACAACTGTCAATAAACAAGGTCGTAT
TTATTCACCAGAATTATTTAAATACTTTTTCGCTGATAATTCTGATGCTCCAGATAGAAA
CAATAGTGGTAAAAATTATCCATTAGATATTACTCTTACAATGAATTTAGATGATAAATC
AAATTATTTTTATGATAATCAAGAATTTTTCCCAATTGATGGAAGAGGATTTGATGTAGA
TCAACAATTCCGTAACTATTATGATGATGAAAGXXXXXXXXXXAAAAAAAAAAAAAAANA
ATGTTTTTNCATTCTTAATTCTTCANTCCTAATTCATAATAACAACTTATTTATATTTAT
ATTGACACGNAATAAATAAATATTATAAAATTTTNTTAAATAAATA
sequence update 2002.10.25
Translated Amino Acid sequence
ii*IIKIIINNNKNNNNKLKLINHTKKTYTHKNNNKMKKTFIFLYCVVLFISTTLAVEMK
KTQDFNLRIFDQHPKYNNNFEPENGVLTVNLVKSILNETTGIPELTTMSNLTTVNKQGRI
YSPELFKYFFADNSDAPDRNNSGKNYPLDITLTMNLDDKSNYFYDNQEFFPIDGRGFDVD
QQFRNYYDDE---

---KKKKKXCFXILNSSXLIHNNNLFIFILTRNK*il*nfxk*i


Translated Amino Acid sequence (All Frames)
Frame A:
nhlnnknnn****k***qieinkshqknvhtqk***nekdfhifilcgsfyfyhsss*ne
knsrf*fknfrstski**qf*a*kwcfnsksckinsk*nhwysrvnhnvksyncq*trsy
lftrii*ilfr**f*csr*kq*w*klsiryysynefr**iklfl**srifpn*wkri*cr
stip*ll***k---

---KKKKKXCFXILNSSXLIHNNNLFIFILTRNK*il*nfxk*i

Frame B:
ii*IIKIIINNNKNNNNKLKLINHTKKTYTHKNNNKMKKTFIFLYCVVLFISTTLAVEMK
KTQDFNLRIFDQHPKYNNNFEPENGVLTVNLVKSILNETTGIPELTTMSNLTTVNKQGRI
YSPELFKYFFADNSDAPDRNNSGKNYPLDITLTMNLDDKSNYFYDNQEFFPIDGRGFDVD
QQFRNYYDDE---

---kkkkxnvfxflilxs*fiittylyly*hxinkyykixlnk

Frame C:
sfk**k**liiikiiitn*n**itpkkrthtkiiik*krlsyfytvwfflflpl*qlk*k
klkili*efsiniqniitilslkmvf*q*il*nqf*mkplvfqs*pqcqilqlsinkvvf
ihqnylntfsliilmlqietivvkiih*illlq*i*minqiifmiiknfsqlmeedlm*i
nnsvtimmmk---

---kkkkxmfxhs*ffxpns**qliyiyidtx*iniikfx*in

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHS475 (CHS475Q) /CSM/CH/CHS4-D/CHS475Q.Seq.d/ 862 0.0
AHF111 (AHF111Q) /CSM/AH/AHF1-A/AHF111Q.Seq.d/ 862 0.0
SHL390 (SHL390Q) /CSM/SH/SHL3-D/SHL390Q.Seq.d/ 854 0.0
SHJ448 (SHJ448Q) /CSM/SH/SHJ4-B/SHJ448Q.Seq.d/ 854 0.0
SHJ195 (SHJ195Q) /CSM/SH/SHJ1-D/SHJ195Q.Seq.d/ 854 0.0
SHI807 (SHI807Q) /CSM/SH/SHI8-A/SHI807Q.Seq.d/ 854 0.0
SHH122 (SHH122Q) /CSM/SH/SHH1-A/SHH122Q.Seq.d/ 854 0.0
SHG866 (SHG866Q) /CSM/SH/SHG8-C/SHG866Q.Seq.d/ 854 0.0
SHG676 (SHG676Q) /CSM/SH/SHG6-D/SHG676Q.Seq.d/ 854 0.0
SHG208 (SHG208Q) /CSM/SH/SHG2-A/SHG208Q.Seq.d/ 854 0.0

own update 2002.10. 6
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AB053203|AB053203.1 Dictyostelium discoideum psiA mRNA for Psi facor, complete cds. 38 0.002 4
AL360354|AL360354.1 Plasmodium vivax telomeric YAC clone, complete finished sequence. 34 0.007 8
U67940|U67940.1 Dictyostelium discoideum ORFveg106 mRNA, complete cds. 48 0.009 2
AE017147|AE017147.1 Helicobacter hepaticus ATCC 51449 section 4 of 6 of the complete genome. 52 0.016 1
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence. 34 0.029 6
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence. 34 0.031 8
AC147856|AC147856.3 Atelerix albiventris clone LB4-158N8, WORKING DRAFT SEQUENCE, 11 ordered pieces. 50 0.064 1
AE014842|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence. 32 0.13 12
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4. 34 0.13 10
AJ011856|AJ011856.1 Saccharomyces cerevisiae complete mitochondrial genome. 38 0.16 6
dna update 2005.12. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q968Z6) RecName: Full=Protein psiA; AltName: Full=Prespore-cell... 133 6e-30
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor; &AC11695... 116 6e-25
(Q94494) RecName: Full=Protein psiH; Flags: Precursor; &U67940_... 109 7e-23
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor; 96 8e-19
(Q55FQ5) RecName: Full=Protein psiS; Flags: Precursor; 96 1e-18
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor; 88 2e-16
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor; 82 1e-14
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 69 1e-10
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor; &AC11568... 63 1e-08
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 54 6e-06
protein update 2009. 4.13
PSORT

psg: 0.43 gvh: 0.70 alm: 0.21 top: 0.10 tms: 0.07 mit: 0.42 mip: 0.00
nuc: 0.08 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.13 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
20.0 %: mitochondrial
16.0 %: Golgi
16.0 %: nuclear
16.0 %: endoplasmic reticulum
4.0 %: extracellular, including cell wall
4.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for CHS475 is cyt

5' end seq. ID CHS475F
5' end seq.
>CHS475F.Seq
AATCATTTAAATAATAAAAATAATAATTAATAATAATAAAAATAATAATAACAAATTGAA
ATTAATAAATCACACCAAAAAAACGTACACACACAAAAATAATAATAAAATGAAAAAGAC
TTTCATATTTTTATACTGTGTGGTTCTTTTTATTTCTACCACTCTAGCAGTTGAAATGAA
AAAAACTCAAGATTTTAATTTAAGAATTTTCGATCAACATCCAAAATATAATAACAATTT
TGAGCCTGAAAATGGTGTTTTAACAGTAAATCTTGTAAAATCAATTCTAAATGAAACCAC
TGGTATTCCAGAGTTAACCACAATGTCAAATCTTACAACTGTCAATAAACAAGGTCGTAT
TTATTCACCAGAATTATTTAAATACTTTTTCGCTGATAATTCTGATGCTCCAGATAGAAA
CAATAGTGGTAAAAATTATCCATTAGATATTACTCTTACAATGAATTTAGATGATAAATC
AAATTATTTTTATGATAATCAAGAATTTTTCCCAATTGATGGAAGAGGATTTGATGTAGA
TCAACAATTCCGTAACTATTATGATGATGAAAGNNNNNNNNNN
Length of 5' end seq. 583
3' end seq. ID CHS475Z
3' end seq.
>CHS475Z.Seq
NNNNNNNNNNAAAAAAAAAAAAAAANAATGTTTTTNCATTCTTAATTCTTCANTCCTAAT
TCATAATAACAACTTATTTATATTTATATTGACACGNAATAAATAAATATTATAAAATTT
TNTTAAATAAATA
Length of 3' end seq. 133
Connected seq. ID CHS475P
Connected seq.
>CHS475P.Seq
AATCATTTAAATAATAAAAATAATAATTAATAATAATAAAAATAATAATAACAAATTGAA
ATTAATAAATCACACCAAAAAAACGTACACACACAAAAATAATAATAAAATGAAAAAGAC
TTTCATATTTTTATACTGTGTGGTTCTTTTTATTTCTACCACTCTAGCAGTTGAAATGAA
AAAAACTCAAGATTTTAATTTAAGAATTTTCGATCAACATCCAAAATATAATAACAATTT
TGAGCCTGAAAATGGTGTTTTAACAGTAAATCTTGTAAAATCAATTCTAAATGAAACCAC
TGGTATTCCAGAGTTAACCACAATGTCAAATCTTACAACTGTCAATAAACAAGGTCGTAT
TTATTCACCAGAATTATTTAAATACTTTTTCGCTGATAATTCTGATGCTCCAGATAGAAA
CAATAGTGGTAAAAATTATCCATTAGATATTACTCTTACAATGAATTTAGATGATAAATC
AAATTATTTTTATGATAATCAAGAATTTTTCCCAATTGATGGAAGAGGATTTGATGTAGA
TCAACAATTCCGTAACTATTATGATGATGAAAG----------AAAAAAAAAAAAAAANA
ATGTTTTTNCATTCTTAATTCTTCANTCCTAATTCATAATAACAACTTATTTATATTTAT
ATTGACACGNAATAAATAAATATTATAAAATTTTNTTAAATAAATA
Length of connected seq. 696
Full length Seq ID -
Full length Seq. -
Length of full length seq. -