CHS481
Library CH
(Link to library)
Clone ID CHS481
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHS481P
(Link to Original site)
Representative DNA sequence
>CHS481 (CHS481Q) /CSM/CH/CHS4-D/CHS481Q.Seq.d/
AATTCAGTAGTTCAATTTAATTTATAATAATAATAATAGTATAAATATATAAAGATTAAT
TTTTTTGTATATAAATTTTTGTAAATAAATAAATAAATAATAATTTTTTTTTTAATTCAC
ACACATACATATAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTGGTATTGAT
TTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAATTATTGCA
AATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTACTGATACAGAACGTTTA
ATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACCAATACAGTATTTGATGCT
AAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATATGAAACATTGG
CCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAATTCAAAGGT
GAAACTAAAGTTTTCTCACCAGAANAAATCTCTTCAATGGTACTCTTAAAAATGAAANAA
ACCGCTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAATTACCGTTCCAGCTTAT
TTCAATGATAGTCAACGTCAAGCAACCAAAGATXXXXXXXXXXCAGGTGTATTAATTCAA
GTTTATGAAGGTGAACGTGCTATGACCAAAGATAATAATTTATTGGGTAAATTTGAACTT
TCTGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTACATTTGATGTTGAT
GCAAATGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAACAAACAAAAGATT
ACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGAT
GCAGAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAA
TTGGAAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAA
ATTTCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTA
GAATCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCA
GTTGTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGT
ATGCCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTA
GATTGACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATAATA
AGTTAGTAAAATCAATAAAGCTTCTCATATATAGTACACATTAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
nsvvqfnl*****ykyikinffvykfl*ink*iiifflihthtyky*iiky*KMSSIGID
LGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDA
KRLIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVEFKGETKVFSPEXISSMVLLKMKX
TAEAYLGKTINNAVITVPAYFNDSQRQATKD---

---GVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNVSAEDK
STGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTVKNSI
KDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSKLYQE
GGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfseenisik*is*kiis**nq*sfsyiv
hikk


Translated Amino Acid sequence (All Frames)
Frame A:
nsvvqfnl*****ykyikinffvykfl*ink*iiifflihthtyky*iiky*KMSSIGID
LGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDA
KRLIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVEFKGETKVFSPEXISSMVLLKMKX
TAEAYLGKTINNAVITVPAYFNDSQRQATKD---

---qvy*fkfmkvnvl*pkiiiywvnlnflvfhqhqevyhklklhlmlmqmvs*myqlki
nqlvtnkrlqlpmikvvfqkkklkkwllmqrnsnnkmnnkkivlnqrinwkimhsllkiq
lkmkklqpkfqiqinqllnlklkvysng*nqikpqkrmnmkir*kp*kqlsiqs*vnsik
kevchkvvvcqvvcqmihqrvqttk*tn*idgifqrktslsnrflkk**vskinkashi*
ytlk

Frame B:
iq*fnliynnnnsini*rliflyinfck*ink**fff*fthihinik*lnikkchqlvli
*vqhihvlvfgkmivlkllqmikvieplhlmlhlliqnv*lvmlqriklq*iqpiqylml
nv*lvvnlvtkkfkvi*nighsklfqrmvishifklnskvklkfshqxkslqwys*k*xk
plklilvkpliml*lpfqlismivnvkqpk---

---rcinssl*r*tcydqr**fig*i*tfwyststkrctts*syi*c*ckwylkcis*r*
inw*qtkdynyq**rssfkrrn*kngc*creiqttr*ttkrsc*ike*igklcihc*kfn
*r*kscsqnfrfr*iny*i*n*kctqmvriksnrrkg*i*r*deslrsscqsnhe*tlsr
rryatrwwyarwyvk*ftkefkqqsrrirlteffrgkhlyqidflknnklvksiklliys
th*k

Frame C:
fsssi*fiiiiiv*iykd*ffci*ifvnk*innnfffnshtyi*ilnn*ilknvinwy*f
rynifmcwclak*sc*nyck*sr**nhsilcciy*yrtfnw*cckesscnesnqysi*c*
tfnws*i**qrssk*yetlaiqsyskgw**atyss*iqr*n*sfltrxnlfngtlknexn
r*slsw*nh**ccnyrsslfq**stssnqr---

---GVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNVSAEDK
STGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTVKNSI
KDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSKLYQE
GGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfseenisik*is*kiis**nq*sfsyiv
hikk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHS481 (CHS481Q) /CSM/CH/CHS4-D/CHS481Q.Seq.d/ 1580 0.0
CHS205 (CHS205Q) /CSM/CH/CHS2-A/CHS205Q.Seq.d/ 1437 0.0
VHP266 (VHP266Q) /CSM/VH/VHP2-C/VHP266Q.Seq.d/ 1429 0.0
AHC324 (AHC324Q) /CSM/AH/AHC3-A/AHC324Q.Seq.d/ 1427 0.0
CHQ771 (CHQ771Q) /CSM/CH/CHQ7-C/CHQ771Q.Seq.d/ 1425 0.0
CHQ617 (CHQ617Q) /CSM/CH/CHQ6-A/CHQ617Q.Seq.d/ 1423 0.0
VHP719 (VHP719Q) /CSM/VH/VHP7-A/VHP719Q.Seq.d/ 1421 0.0
VHP716 (VHP716Q) /CSM/VH/VHP7-A/VHP716Q.Seq.d/ 1421 0.0
VHP437 (VHP437Q) /CSM/VH/VHP4-B/VHP437Q.Seq.d/ 1421 0.0
VHO677 (VHO677Q) /CSM/VH/VHO6-D/VHO677Q.Seq.d/ 1421 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70). 1435 0.0 1
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,. 1417 0.0 1
AF025951|AF025951.1 Dictyostelium discoideum heat-shock cognate protein 70 (hsc70) mRNA, complete cds. 252 e-138 7
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence. 252 e-128 11
AF221541|AF221541.1 Cryptosporidium serpentis heat shock protein 70 (HSP70) gene, partial cds. 145 e-106 10
AY954892|AY954892.1 Cryptosporidium andersoni strain HenanZhzhca heat shock protein 70 gene, partial cds. 123 8e-98 10
DQ060426|DQ060426.1 Cryptosporidium andersoni strain zzca heat shock protein 70-like gene, partial sequence. 127 3e-97 9
A58313|A58313.1 Sequence 1 from Patent WO9636707. 123 3e-97 7
Z30210|Z30210.1 C.albicans (ATCC 20955) cahsp70 mRNA for heat shock protein 70. 123 7e-97 7
AX536934|AX536934.1 Sequence 535 from Patent WO02064766. 123 1e-96 7
dna update 2005.12. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AK303980_1(AK303980|pid:none) Homo sapiens cDNA FLJ54342 complet... 347 4e-94
AK097824_1(AK097824|pid:none) Homo sapiens cDNA FLJ40505 fis, cl... 344 4e-93
(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1; ... 344 5e-93
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ... 344 5e-93
(Q557E0) RecName: Full=Heat shock cognate 70 kDa protein 2; ... 295 2e-78
AF025951_1(AF025951|pid:none) Dictyostelium discoideum heat-shoc... 295 2e-78
AY495382_1(AY495382|pid:none) Trypanosoma rangeli isolate Tre he... 276 2e-72
(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3; 276 2e-72
U71151_1(U71151|pid:none) Pneumocystis carinii heat shock protei... 275 3e-72
U80967_1(U80967|pid:none) Pneumocystis carinii f. sp. carinii he... 275 3e-72
protein update 2009. 4.13
PSORT

psg: 0.87 gvh: 0.35 alm: 0.46 top: 0.27 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for CHS481 is cyt

5' end seq. ID CHS481F
5' end seq.
>CHS481F.Seq
AATTCAGTAGTTCAATTTAATTTATAATAATAATAATAGTATAAATATATAAAGATTAAT
TTTTTTGTATATAAATTTTTGTAAATAAATAAATAAATAATAATTTTTTTTTTAATTCAC
ACACATACATATAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTGGTATTGAT
TTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAATTATTGCA
AATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTACTGATACAGAACGTTTA
ATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACCAATACAGTATTTGATGCT
AAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATATGAAACATTGG
CCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAATTCAAAGGT
GAAACTAAAGTTTTCTCACCAGAANAAATCTCTTCAATGGTACTCTTAAAAATGAAANAA
ACCGCTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAATTACCGTTCCAGCTTAT
TTCAATGATAGTCAACGTCAAGCAACCAAAGATNNNNNNNNNN
Length of 5' end seq. 643
3' end seq. ID CHS481Z
3' end seq.
>CHS481Z.Seq
NNNNNNNNNNCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTATGACCAAAGAT
AATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGAGGTGTACCA
CAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTATCAGCTGAAGAT
AAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGTCGTCTTTCAAAA
GAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGATGAACAACAA
AAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTTAAAAATTCA
ATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACTATTGAATCT
GAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAGGATGAATAT
GAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAACTCTATCAA
GAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGATTCACCAAAG
AGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAAAACATCTCT
ATCAAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGCTTCTCATATATA
GTACACATTAAAAAA
Length of 3' end seq. 735
Connected seq. ID CHS481P
Connected seq.
>CHS481P.Seq
AATTCAGTAGTTCAATTTAATTTATAATAATAATAATAGTATAAATATATAAAGATTAAT
TTTTTTGTATATAAATTTTTGTAAATAAATAAATAAATAATAATTTTTTTTTTAATTCAC
ACACATACATATAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTGGTATTGAT
TTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAATTATTGCA
AATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTACTGATACAGAACGTTTA
ATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACCAATACAGTATTTGATGCT
AAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATATGAAACATTGG
CCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAATTCAAAGGT
GAAACTAAAGTTTTCTCACCAGAANAAATCTCTTCAATGGTACTCTTAAAAATGAAANAA
ACCGCTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAATTACCGTTCCAGCTTAT
TTCAATGATAGTCAACGTCAAGCAACCAAAGAT----------CAGGTGTATTAATTCAA
GTTTATGAAGGTGAACGTGCTATGACCAAAGATAATAATTTATTGGGTAAATTTGAACTT
TCTGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTACATTTGATGTTGAT
GCAAATGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAACAAACAAAAGATT
ACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGAT
GCAGAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAA
TTGGAAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAA
ATTTCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTA
GAATCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCA
GTTGTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGT
ATGCCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTA
GATTGACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATAATA
AGTTAGTAAAATCAATAAAGCTTCTCATATATAGTACACATTAAAAAA
Length of connected seq. 1358
Full length Seq ID -
Full length Seq. -
Length of full length seq. -