>FC-AA02 (FC-AA02Q) /CSM/FC/FC-AA/FC-AA02Q.Seq.d/
XXXXXXXXXXCAAAAAGGCTCCTGGTCCGGAAGGATTGGGTAATCATTTGAATTTCCTAC
GTAACTGGGCTTGATCTTTGTAATTATTGATCATAAACGAGGAATTCCTTGTAAGCGTAA
GTCATTCCCTTATGCTGAATATGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACC
GATCGAATGATACGGTAAAGTTAACGGATCGTTTTATCTGTGGCAACACTGATATAAATT
AAAAGTTATTTAAATCTCATTGTTTAGAGGAAGGAGAAGTCGTAACAAGGTATCCGTAGG
TGAACTGCGGATGGATCATTTTTTATCTTAATATCATAAACTTTATGTTTTTTTGGATAA
TGGAACTGCTTGCGTATAAAGAAATTAGGCTTTTTAATTAAGGTTTAAGAGTAAGTTGGC
TTGTCAGATTTATTGTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

---kkapgpeglgnhlnflrnwa*sl*LLIINEEFLVSVSHSLMLNMSLPFVHTARRSYR
SNDTVKLTDRFICGNTDIN*klfkshcleegevvtryp*vncgwiifylniinfmffwim
ellaykeirlfn*glrvswlvrfiv*kkkkkkkkk

Frame A:
---kkapgpeglgnhlnflrnwa*sl*LLIINEEFLVSVSHSLMLNMSLPFVHTARRSYR
SNDTVKLTDRFICGNTDIN*klfkshcleegevvtryp*vncgwiifylniinfmffwim
ellaykeirlfn*glrvswlvrfiv*kkkkkkkkk


Frame B:
---krllvrkdwvii*isyvtgldlcny*s*trnsl*a*viplc*icpcplytppvaptd
rmir*s*rivlsvatli*iksylnliv*rkeks*qgirr*tadgsffilis*tlcffg*w
nclrikklgflikv*e*vglsdllskkkkkkkkkk


Frame C:
---kgswsgrig*sfefpt*lglifviidhkrgipckrksfpyaeyvpalcthrpsllpi
e*ygkvngsfylwqh*yklkvi*islfrgrrsrnkvsvgelrmdhfls*yhklyvfldng
tacv*rn*af*lrfksklacqiyclkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AA02 (FC-AA02Q) /CSM/FC/FC-AA/FC-AA02Q.Seq.d/                      807   0.0
FC-AG24 (FC-AG24Q) /CSM/FC/FC-AG/FC-AG24Q.Seq.d/                      785   0.0
AHA506 (AHA506Q) /CSM/AH/AHA5-A/AHA506Q.Seq.d/                        777   0.0
VFD795 (VFD795Q) /CSM/VF/VFD7-D/VFD795Q.Seq.d/                        745   0.0
VHK334 (VHK334Q) /CSM/VH/VHK3-B/VHK334Q.Seq.d/                        743   0.0
VFM557 (VFM557Q) /CSM/VF/VFM5-C/VFM557Q.Seq.d/                        743   0.0
VHG142 (VHG142Q) /CSM/VH/VHG1-B/VHG142Q.Seq.d/                        741   0.0
VHJ647 (VHJ647Q) /CSM/VH/VHJ6-B/VHJ647Q.Seq.d/                        739   0.0
VHE244 (VHE244Q) /CSM/VH/VHE2-B/VHE244Q.Seq.d/                        729   0.0
AHK528 (AHK528Q) /CSM/AH/AHK5-B/AHK528Q.Seq.d/                        729   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment.   577  0.0  3
X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene.     549  0.0  5
X00134|X00134.1 Dictyostelium discoideum 17S rRNA sequence.      577  e-164  2
K02641|K02641.1 Slime mold (D.discoideum) 17S small subunit ribosomal RNA gene, complete coding sequence.   577  e-164  2
AF351199|AF351199.1 Dictyostelium sphaerocephalum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.   224  8e-59  2
AF351197|AF351197.1 Dictyostelium mucoroides 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.   202  1e-57  2
AF219101|AF219101.1 Dictyostelium dimigraformum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.   131  6e-48  3
AF255358|AF255358.1 Lembadion bullinum small subunit ribosomal RNA gene, partial sequence.   149  2e-47  2
AY179984|AY179984.1 Uncultured alveolate clone CCI74 18S small subunit ribosomal RNA gene, partial sequence.   149  3e-47  2
U07410|U07410.1 Acanthamoeba sp. BCM:0288:37 18S rRNA gene.   103  9e-47  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM462492_6(AM462492|pid:none) Vitis vinifera contig VV78X177628....    59   5e-08
AF421549_1(AF421549|pid:none) Gallus gallus CDH1-D mRNA, partial...    59   7e-08
AY914930_1(AY914930|pid:none) Schistosoma japonicum SJCHGC01014 ...    54   2e-06
EU955514_1(EU955514|pid:none) Zea mays clone 1535262 hypothetica...    50   2e-05
BA000023_1285(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,...    42   3e-04
DQ995340_1(DQ995340|pid:none) Saussurea involucrata antifreeze p...    36   0.46
B72581(B72581)hypothetical protein APES063 - Aeropyrum pernix (s...    35   1.0
AM085146_9(AM085146|pid:none) Magnetospirillum gryphiswaldense m...    35   1.0
CP000930_2283(CP000930|pid:none) Heliobacterium modesticaldum Ic...    33   2.3
AP009386_1894(AP009386|pid:none) Burkholderia multivorans ATCC 1...    33   3.0

 psg: 0.75  gvh: 0.71  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for FC-AA02 is cyt

>FC-AA02Z.Seq
----------CAAAAAGGCTCCTGGTCCGGAAGGATTGGGTAATCATTTGAATTTCCTAC
GTAACTGGGCTTGATCTTTGTAATTATTGATCATAAACGAGGAATTCCTTGTAAGCGTAA
GTCATTCCCTTATGCTGAATATGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACC
GATCGAATGATACGGTAAAGTTAACGGATCGTTTTATCTGTGGCAACACTGATATAAATT
AAAAGTTATTTAAATCTCATTGTTTAGAGGAAGGAGAAGTCGTAACAAGGTATCCGTAGG
TGAACTGCGGATGGATCATTTTTTATCTTAATATCATAAACTTTATGTTTTTTTGGATAA
TGGAACTGCTTGCGTATAAAGAAATTAGGCTTTTTAATTAAGGTTTAAGAGTAAGTTGGC
TTGTCAGATTTATTGTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA