>FC-AI01 (FC-AI01Q) /CSM/FC/FC-AI/FC-AI01Q.Seq.d/
CGATGATTTATAAATAAATCTTGAAAATAAAATAAAAAAAATAAAAAAATAAAAAAATAA
AAAAACAAACGATTTTAGTTGAAAGAGAGTGACGGGGGGGGGTAAGACAAGAACACAAGT
GTGAAGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAATAAAAAAAAAA
ATAAAAATAAAAATAAAAAAAAAAAAAAAATAAAAAAAAAATAAAAAAAAATAATTTTTA
AAATAAA

miyk*ilkik*kk*knkkikkqtilvere*RGGVRQEHKCEGSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSNKKKNKNKNKKKKKIKKK*kkiifki

Frame A:
r*finks*k*nkknkkikk*knkrf*lkesdggg*dkntsvkvvvvvvvvvvvvvvvvvv
vvvvvvvvvvvvvvvvikkkikikikkkkk*kknkkk*flk*


Frame B:
ddl*inlenkikkikk*knkktndfs*krvtgggktrtqv*r******************
*****************kkk*k*k*kkkknkkkikknnf*nk


Frame C:
miyk*ilkik*kk*knkkikkqtilvere*RGGVRQEHKCEGSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSNKKKNKNKNKKKKKIKKK*kkiifki

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AI01 (FC-AI01Q) /CSM/FC/FC-AI/FC-AI01Q.Seq.d/                       68   8e-11
VHC242 (VHC242Q) /CSM/VH/VHC2-B/VHC242Q.Seq.d/                         56   3e-07
VSI843 (VSI843Q) /CSM/VS/VSI8-B/VSI843Q.Seq.d/                         34   1.2
SSA146 (SSA146Q) /CSM/SS/SSA1-B/SSA146Q.Seq.d/                         34   1.2
SLJ680 (SLJ680Q) /CSM/SL/SLJ6-D/SLJ680Q.Seq.d/                         34   1.2
SLD553 (SLD553Q) /CSM/SL/SLD5-C/SLD553Q.Seq.d/                         34   1.2
SLD482 (SLD482Q) /CSM/SL/SLD4-D/SLD482Q.Seq.d/                         34   1.2
SLC332 (SLC332Q) /CSM/SL/SLC3-B/SLC332Q.Seq.d/                         34   1.2
CHG408 (CHG408Q) /CSM/CH/CHG4-A/CHG408Q.Seq.d/                         34   1.2
AFE424 (AFE424Q) /CSM/AF/AFE4-A/AFE424Q.Seq.d/                         34   1.2

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    56   2e-14  5
AC107199|AC107199.4 Rattus norvegicus clone CH230-195F4, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    32   1.9    2
AC113057|AC113057.4 Mus musculus clone RP23-253M3, WORKING DRAFT SEQUENCE, 12 unordered pieces.    32   1.9    2
AL162873|AL162873.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F8F6 (ESSA  project).    36   4.1    3
BX681417|BX681417.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-161L11.    32   6.1    6
AZ804490|AZ804490.1 2M0065F20F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC2M0065F20 F, DNA sequence.    34   7.9    2
AC006011|AC006011.2 Homo sapiens clone DJ0935K16, complete sequence.    40   16     1
AC013263|AC013263.11 Homo sapiens chromosome 2 clone RP11-140B20, WORKING DRAFT SEQUENCE, 21 unordered pieces.    40   16     1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 136,063,600

 psg: 0.81  gvh: 0.47  alm: 0.72  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.02
 nuc: 0.29  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial

>> prediction for FC-AI01 is nuc

>FC-AI01E.Seq
CGATGATTTATAAATAAATCTTGAAAATAAAATAAAAAAAATAAAAAAATAAAAAAATAA
AAAAACAAACGATTTTAGTTGAAAGAGAGTGACGGGGGGGGGTAAGACAAGAACACAAGT
GTGAAGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAATAAAAAAAAAA
ATAAAAATAAAAATAAAAAAAAAAAAAAAATAAAAAAAAAATAAAAAAAAATAATTTTTA
AAATAAA