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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AI05
Library FC
(Link to library)
Clone ID FC-AI05
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15516-1
Original site URL
Representative seq. ID FC-AI05E
(Link to Original site)
Representative DNA sequence 
>FC-AI05 (FC-AI05Q) /CSM/FC/FC-AI/FC-AI05Q.Seq.d/
CAAGATTTGAATGCCATGTCAATTGGTTTATCACATTCATACAGTAGATATAAATTAAAG
TTCTCACCAGATAAGGTCGATACAATGATCGTTCAAGCCATCTCATTATTGGATGATTTG
ACTACCGAAATCAACATTTACGCAATGAGAGCTCGTGAATGGTACGGATGGCATTTCCCA
GAGTTGGGTAAATTGATCACCAATCATACCCAATACGCCAACGCCATCAAGGCAATGGGT
AACAGAAAGTCTGCTGTCGATACCGATTTCACCGATATCCTCCCAGAGGAAGTTGCCGAA
GAAGTTAAAGAAGCCGCTCAAATCTCTATGGGTACTGAAATTTCACCAGAGGATCTCGAT
CATATCTTTGCCCTTTGCGATCAATTCCTTTCCATTCAAGCTTACCACACCGAATTAACC
GAGTACCTTAAATCTCGTATGGAAGCTATCGCTCCAAATCTTACAATTTTAGTTGGTGAA
ATCGTTGGTGCTCGTTTAATTTGTCGTGCTGGTTCATTGATGAATTTAGCCAGATATCCA
GCTTCAACCATCAAATTCTCGGTGCTGAAAAAGCCCTCTTCCGTGCCCTTAAAACTAAAC
ATAACACTCCAAAATATGGTCTCATCTATAATGCCAAGATCGTCGGTGAAGCTTCATTAA
AGAACAAAGGTAAAATGTCTAGAGTTCTCGCCGCTAAAGCTGCTTTATCCGCTCGTTTCG
ATGCTCTCTGTGAAGTCAGTGATACAAGTTATGGTATCGCTTACAAAGGTGCTGTTGATC
GTAGAGCCGCTGCTATTGAAGGTCGTGAAGTTAGAAAATCATTAAATGCCGTCAAACCAG
AGAAATCTGGTAATGTCGCCAAATATGATCATACTAAATCTGCCACTACAAATACCACCA
GAGATGTTGCCACTAAATCCTCAAAAGAATCATCAATTAAACAAGAGAAACAAGACGTTA
AAATGGAAGAAGCCTCATCATCTGACTCTGACTCATCATCCGATTCTGATTCCTCTGAAG
AAGAAAAATCAAAAAAATCAAAGAAATCAAAGAAAGAAGAAACTCCAGTTGCCAAAGAGG
AGAAGAAAGAAAAGAAATCAAAGAAAGAAGAAACTCCAGTTGCCAAAGAGGAAAAGAAAG
AAAAAGAAGAAAAGAAAGATAAAAAAGAAAAGAAAGAAAAGAAAGAAGA
sequence update 1996.12.20
Translated Amino Acid sequence 
rfechvnwfitfiq*i*ikvltr*gryndrsshliig*fdyrnqhlrness*mvrmafpr
vg*idhqsypirqrhqgng*qkvccryrfhrypprgscrrs*rsrsnlygy*nftrgsrs
ylcplrsipfhsslphrinrvp*isygsyrsksynfsw*NRWCSFNLSCWFIDEFSQISS
FNHQILGAEKALFRALKTKHNTPKYGLIYNAKIVGEASLKNKGKMSRVLAAKAALSARFD
ALCEVSDTSYGIAYKGAVDRRAAAIEGREVRKSLNAVKPEKSGNVAKYDHTKSATTNTTR
DVATKSSKESSIKQEKQDVKMEEASSSDSDSSSDSDSSEEEKSKKSKKSKKEETPVAKEE
KKEKKSKKEETPVAKEEKKEKEEKKDKKEKKEKKE
Translated Amino Acid sequence (All Frames) 
Frame A:
qdlnamsiglshsysryklkfspdkvdtmivqaisllddltteiniyamrarewygwhfp
elgklitnhtqyanaikamgnrksavdtdftdilpeevaeevkeaaqismgteispedld
hifalcdqflsiqayhtelteylksrmeaiapnltilvgeivgarlicragslmnlaryp
astikfsvlkkpssvplklnitlqnmvssimprssvklh*rtkvkclefsplkllyplvs
mlsvksviqvmvsltkvlliveplllkvvklenh*mpsnqrnlvmspnmiilnlplqipp
emlplnpqknhqlnkrnktlkwkkphhltlthhpiliplkkknqknqrnqrkkklqlpkr
rrkkrnqrkkklqlpkrkrkkkkkrkikkkrkkrkk


Frame B:
ki*mpcqlvyhihtvdin*sshqirsiq*sfkpshywmi*lpkstftq*elvngtdgisq
swvn*spiipntptpsrqwvtesllsipispissqrklpkklkkplkslwvlkfhqrisi
islpfainsfpfklttpn*pstlnlvwklslqilqf*lvkslvlv*fvvlvh**i*pdiq
lqpsnsrc*ksplpcp*n*t*hskiwshl*cqdrr*sfikeqr*nv*ssrr*scfirsfr
csl*sq*yklwyrlqrcc*s*srcy*rs*s*kiikcrqtreiw*crqi*sy*ichykyhq
rcch*ilkriin*tretrr*ngrslii*l*liirf*fl*rrkikkikeikerrnsscqrg
eerkeikerrnsscqrgkerkrrker*krkerkerr


Frame C:
rfechvnwfitfiq*i*ikvltr*gryndrsshliig*fdyrnqhlrness*mvrmafpr
vg*idhqsypirqrhqgng*qkvccryrfhrypprgscrrs*rsrsnlygy*nftrgsrs
ylcplrsipfhsslphrinrvp*isygsyrsksynfsw*NRWCSFNLSCWFIDEFSQISS
FNHQILGAEKALFRALKTKHNTPKYGLIYNAKIVGEASLKNKGKMSRVLAAKAALSARFD
ALCEVSDTSYGIAYKGAVDRRAAAIEGREVRKSLNAVKPEKSGNVAKYDHTKSATTNTTR
DVATKSSKESSIKQEKQDVKMEEASSSDSDSSSDSDSSEEEKSKKSKKSKKEETPVAKEE
KKEKKSKKEETPVAKEEKKEKEEKKDKKEKKEKKE
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AI05 (FC-AI05Q) /CSM/FC/FC-AI/FC-AI05Q.Seq.d/                     2014   0.0
FC-155 (FC-155Q) /CSM/CG/CG-FC/FC-155Q.Seq.d/                        2014   0.0
AFC662 (AFC662Q) /CSM/AF/AFC6-C/AFC662Q.Seq.d/                       1219   0.0
VFJ738 (VFJ738Q) /CSM/VF/VFJ7-B/VFJ738Q.Seq.d/                       1203   0.0
CFF804 (CFF804Q) /CSM/CF/CFF8-A/CFF804Q.Seq.d/                       1118   0.0
SFC631 (SFC631Q) /CSM/SF/SFC6-B/SFC631Q.Seq.d/                       1112   0.0
SFH420 (SFH420Q) /CSM/SF/SFH4-A/SFH420Q.Seq.d/                       1049   0.0
VFA259 (VFA259Q) /CSM/VF/VFA2-C/VFA259Q.Seq.d/                        948   0.0
VFC303 (VFC303Q) /CSM/VF/VFC3-A/VFC303Q.Seq.d/                        928   0.0
AFA368 (AFA368Q) /CSM/AF/AFA3-C/AFA368Q.Seq.d/                        870   0.0
own update 2003. 5.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BI500956|BI500956.1 kx26b07.y1 Parastrongyloides trichosuri PA pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:O45012 O45012 W01B11.3 PROTEIN. [1] ;, mRNA sequence.    46   5e-13  4
AL426851|AL426851.1 clone BA0AB015E02 of library BA0AB from strain CLIB 210 of  Kluyveromyces lactis.    46   4e-11  4
BZ300873|BZ300873.1 KD0966.p1 Kluyveromyces delphensis Random Genomic Library Kluyveromyces delphensis genomic clone KD0966, DNA sequence.    54   6e-08  3
BU050617|BU050617.1 1111031A01.y1 1111 - Unigene III from Maize Genome Project Zea mays cDNA, mRNA sequence.    50   9e-08  2
CF050373|CF050373.1 QCM11e02.yg QCM Zea mays cDNA clone QCM11e02, mRNA sequence.    50   9e-08  2
AI812234|AI812234.1 605087D01.y1 605 - Endosperm cDNA library from Schmidt lab Zea mays cDNA, mRNA sequence.    50   9e-08  2
CF037154|CF037154.1 QCG41d07.yg QCG Zea mays cDNA clone QCG41d07, mRNA sequence.    50   9e-08  2
CA077157|CA077157.1 SCQGAM1048E08.g AM1 Saccharum officinarum cDNA clone SCQGAM1048E08 5', mRNA sequence.    44   3e-07  2
CG054922|CG054922.1 PUIMJ45TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa0616G18, genomic survey sequence.    48   3e-07  2
BZ368405|BZ368405.1 Cot466.1.F01.T3 Maize Cot466 library Zea mays genomic, DNA sequence.    48   3e-07  2
dna update 2003.11.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55FI4) RecName: Full=Nucleolar protein 58; AltName: Full=Nucle...   342   e-157
FN392322_280(FN392322|pid:none) Pichia pastoris GS115 chromosome...   221   2e-84
(A7TIF5) RecName: Full=Nucleolar protein 58;                          218   5e-83
(Q6BIX6) RecName: Full=Nucleolar protein 58;  &CR382139_303(CR38...   215   2e-82
BC061961_1(BC061961|pid:none) Danio rerio NOP58 ribonucleoprotei...   229   2e-82
BC155194_1(BC155194|pid:none) Danio rerio NOP58 ribonucleoprotei...   229   2e-82
BC044394_1(BC044394|pid:none) Danio rerio NOP58 ribonucleoprotei...   229   2e-82
EU515128_1(EU515128|pid:none) Dunaliella salina MAR-binding prot...   223   3e-82
CU928180_634(CU928180|pid:none) Kluyveromyces thermotolerans str...   214   3e-82
(A3LUT0) RecName: Full=Nucleolar protein 58;  &CP000499_38(CP000...   212   4e-82
protein update 2009. 7. 2
PSORT 

 psg: 0.89  gvh: 0.46  alm: 0.46  top: 0.30  tms: 0.00  mit: 0.28  mip: 0.02
 nuc: 0.27  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 16.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for FC-AI05 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AI05E
Full length Seq. 
>FC-AI05E.Seq
CAAGATTTGAATGCCATGTCAATTGGTTTATCACATTCATACAGTAGATATAAATTAAAG
TTCTCACCAGATAAGGTCGATACAATGATCGTTCAAGCCATCTCATTATTGGATGATTTG
ACTACCGAAATCAACATTTACGCAATGAGAGCTCGTGAATGGTACGGATGGCATTTCCCA
GAGTTGGGTAAATTGATCACCAATCATACCCAATACGCCAACGCCATCAAGGCAATGGGT
AACAGAAAGTCTGCTGTCGATACCGATTTCACCGATATCCTCCCAGAGGAAGTTGCCGAA
GAAGTTAAAGAAGCCGCTCAAATCTCTATGGGTACTGAAATTTCACCAGAGGATCTCGAT
CATATCTTTGCCCTTTGCGATCAATTCCTTTCCATTCAAGCTTACCACACCGAATTAACC
GAGTACCTTAAATCTCGTATGGAAGCTATCGCTCCAAATCTTACAATTTTAGTTGGTGAA
ATCGTTGGTGCTCGTTTAATTTGTCGTGCTGGTTCATTGATGAATTTAGCCAGATATCCA
GCTTCAACCATCAAATTCTCGGTGCTGAAAAAGCCCTCTTCCGTGCCCTTAAAACTAAAC
ATAACACTCCAAAATATGGTCTCATCTATAATGCCAAGATCGTCGGTGAAGCTTCATTAA
AGAACAAAGGTAAAATGTCTAGAGTTCTCGCCGCTAAAGCTGCTTTATCCGCTCGTTTCG
ATGCTCTCTGTGAAGTCAGTGATACAAGTTATGGTATCGCTTACAAAGGTGCTGTTGATC
GTAGAGCCGCTGCTATTGAAGGTCGTGAAGTTAGAAAATCATTAAATGCCGTCAAACCAG
AGAAATCTGGTAATGTCGCCAAATATGATCATACTAAATCTGCCACTACAAATACCACCA
GAGATGTTGCCACTAAATCCTCAAAAGAATCATCAATTAAACAAGAGAAACAAGACGTTA
AAATGGAAGAAGCCTCATCATCTGACTCTGACTCATCATCCGATTCTGATTCCTCTGAAG
AAGAAAAATCAAAAAAATCAAAGAAATCAAAGAAAGAAGAAACTCCAGTTGCCAAAGAGG
AGAAGAAAGAAAAGAAATCAAAGAAAGAAGAAACTCCAGTTGCCAAAGAGGAAAAGAAAG
AAAAAGAAGAAAAGAAAGATAAAAAAGAAAAGAAAGAAAAGAAAGAAGA
Length of full length seq. 1189