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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AI06
Library FC
(Link to library)
Clone ID FC-AI06
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16465-1
Original site URL
Representative seq. ID FC-AI06E
(Link to Original site)
Representative DNA sequence 
>FC-AI06 (FC-AI06Q) /CSM/FC/FC-AI/FC-AI06Q.Seq.d/
GTCATTTGTCAAGCTAAAAGTGGTATGGGTAAAACCGCTGTTTTCGTTTTATCAACTTTA
CAACAAATTGATAACAATCCAAATGGTATTACAACATTAGTATTATGTAATACTAGAGAA
TTAGCATATCAAATTTGTGATGAATTTGATCGTTTCACCAAATATTTACCAAATGTTAAA
ACTGCAGTGATTTATGGTGGTATTCCAGTTCAAACCCATAAAGATTTGATCAAAGAAAAG
AAACCAAACATTATCATTGGTACCCCAGGTCGTATTTTACAATTAGCATCTGAAGGTGCA
CTCTCACTCAAAGAGATTAAACAATTCATTCTTGATGAATGTGATACCATGCTCGAATCA
TTGGATATGAGAAAGGATGTACAAAAGATCTTCAAACTCATCCCAGCCAACAAACAAGTT
ATGATGTTTTCAGCTACCCTCTCTGATACCATTCGTCCAATCTGTAAGAAGTTTATGAAC
AATCCATTGGAAATCTACATCAATGATGGTAGTAAACTCACTCTCCATGGTCTTCAACAA
TACTACGTACCAATCACTGAAGAACAAAAGAATAAAAAACTCATTGAACTCTTGGATTCA
TTAGACTTTAATCAAGCCGTTATTTTCGTCAAATCTGTTAGACGTGCTGATGCCTTAAAT
AAGATCCTCCAAGATATTGGTTTCCCATCCATCTGTATTCATCGTGACCTCGATCAAAAG
GATCGTATCGAACAATACCGTAAATTCAAAAACTTTGAATCTCGTATCATGGTTGCCACT
AATATCTTTGGTCGTGGTATCGATATTGAACGTGTCAATGTCGTCATCAACTACGATATG
GCTGAATCTGCCGATACCTATCTTCACAGAGTAGGTCGTGCTGGTCGTTTTGGTACCAAG
GGTTTAGCCATTTCTTTTGTTCCTTCAAAAGAAGATCCAGTACTTGAACAAGTTCAATCT
AAATTTGTTGTTTCAATTAAAGAACTTGTTGCAACCCCAGATCCAAGTACTTATATGTCT
GGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTTTTTGTTTTAAAATCCATAAAAAAA
AAATAAAAAAAAAAATAAATAAATATCAAGTTAAATTTTAAATTGTTTTTAAAATATA
sequence update 1996.12.24
Translated Amino Acid sequence 
VICQAKSGMGKTAVFVLSTLQQIDNNPNGITTLVLCNTRELAYQICDEFDRFTKYLPNVK
TAVIYGGIPVQTHKDLIKEKKPNIIIGTPGRILQLASEGALSLKEIKQFILDECDTMLES
LDMRKDVQKIFKLIPANKQVMMFSATLSDTIRPICKKFMNNPLEIYINDGSKLTLHGLQQ
YYVPITEEQKNKKLIELLDSLDFNQAVIFVKSVRRADALNKILQDIGFPSICIHRDLDQK
DRIEQYRKFKNFESRIMVATNIFGRGIDIERVNVVINYDMAESADTYLHRVGRAGRFGTK
GLAISFVPSKEDPVLEQVQSKFVVSIKELVATPDPSTYMSG*kkkkkkkknlfvlksikk
k*kkk*iniklnfklflky
Translated Amino Acid sequence (All Frames) 
Frame A:
VICQAKSGMGKTAVFVLSTLQQIDNNPNGITTLVLCNTRELAYQICDEFDRFTKYLPNVK
TAVIYGGIPVQTHKDLIKEKKPNIIIGTPGRILQLASEGALSLKEIKQFILDECDTMLES
LDMRKDVQKIFKLIPANKQVMMFSATLSDTIRPICKKFMNNPLEIYINDGSKLTLHGLQQ
YYVPITEEQKNKKLIELLDSLDFNQAVIFVKSVRRADALNKILQDIGFPSICIHRDLDQK
DRIEQYRKFKNFESRIMVATNIFGRGIDIERVNVVINYDMAESADTYLHRVGRAGRFGTK
GLAISFVPSKEDPVLEQVQSKFVVSIKELVATPDPSTYMSG*kkkkkkkknlfvlksikk
k*kkk*iniklnfklflky


Frame B:
sfvklkvvwvkplfsfyqlynklitiqmvlqh*yyvilen*hikfvmnlivspniyqmlk
lq*fmvvfqfkpiki*skkrnqtlslvpqvvfyn*hlkvhshskrlnnsflmnvipcsnh
wi*ermykrssnssqptnkl*cfqlpslipfvqsvrsl*tihwkstsmmvvnslsmvfnn
ttyqslknkriknslnswih*tlikplfssnlldvlmp*irsskilvshpsvfivtsikr
ivsnntvnsktlnlvswlplislvvvsilnvsmsssttiwlnlpipifte*vvlvvlvpr
v*pfllflqkkiqylnkfnlnllfqlknllqpqiqvliclvkkkkkkkkktflf*np*kk
nkkknk*iss*ilncf*ni


Frame C:
hlss*kwyg*nrcfrfinfttn**qskwyynisim*y*risisnl**i*sfhqiftkc*n
csdlwwysssnp*rfdqrketkhyhwyprsyftisi*rctltqrd*tihs**m*yharii
gyekgctkdlqthpsqqtsydvfsypl*yhssnl*evyeqsignlhq*w**thspwssti
lrtnh*rtke*kth*tlgfirl*ssryfrqic*tc*clk*dpprywfpihlyss*prskg
syrtip*iqkl*isyhgch*ylwswyry*tcqcrhqlryg*icrylssqsrscwsfwyqg
fshffcsfkrrsst*tssi*iccfn*rtccnprskylyvwlkkkkkkkkkpfcfkihkkk
ikkkinkyqvkf*ivfki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AI06 (FC-AI06Q) /CSM/FC/FC-AI/FC-AI06Q.Seq.d/                     2030   0.0
VFE359 (VFE359Q) /CSM/VF/VFE3-C/VFE359Q.Seq.d/                       1838   0.0
AFL695 (AFL695Q) /CSM/AF/AFL6-D/AFL695Q.Seq.d/                       1384   0.0
AFJ724 (AFJ724Q) /CSM/AF/AFJ7-A/AFJ724Q.Seq.d/                       1384   0.0
VFA314 (VFA314Q) /CSM/VF/VFA3-A/VFA314Q.Seq.d/                       1318   0.0
AFE253 (AFE253Q) /CSM/AF/AFE2-C/AFE253Q.Seq.d/                       1312   0.0
AFJ621 (AFJ621Q) /CSM/AF/AFJ6-A/AFJ621Q.Seq.d/                       1275   0.0
SFF569 (SFF569Q) /CSM/SF/SFF5-C/SFF569Q.Seq.d/                       1235   0.0
AFL501 (AFL501Q) /CSM/AF/AFL5-A/AFL501Q.Seq.d/                       1235   0.0
AFG357 (AFG357Q) /CSM/AF/AFG3-C/AFG357Q.Seq.d/                       1223   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AX488925|AX488925.1 Sequence 6225 from Patent WO02053728.          48   3e-20  8
AL408654|AL408654.1 T7 end of clone AV0AA009H09 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.    46   1e-15  5
AW724145|AW724145.1 f4b06nm.f2 Neurospora crassa morning cDNA library Neurospora crassa cDNA clone f4b06nm 5', mRNA sequence.    58   3e-14  2
AW724144|AW724144.1 f4b06nm.f1 Neurospora crassa morning cDNA library Neurospora crassa cDNA clone f4b06nm 5', mRNA sequence.    58   3e-14  2
AW715373|AW715373.1 g4b02nm.f1 Neurospora crassa morning cDNA library Neurospora crassa cDNA clone g4b02nm 5', mRNA sequence.    58   3e-14  2
AE001395|AE001395.1 Plasmodium falciparum chromosome 2, section 32 of 73 of the complete sequence.    58   6e-14  5
CA201831|CA201831.1 SCRLFL1008H03.g FL1 Saccharum officinarum cDNA clone SCRLFL1008H03 5', mRNA sequence.    48   2e-13  4
BM161659|BM161659.1 EST564182 PyBS Plasmodium yoelii yoelii cDNA clone PYCKH53 5' end, mRNA sequence.    82   4e-13  3
U08102|U08102.1 Caenorhabditis elegans putative RNA helicase (hel) mRNA, partial cds.    66   1e-12  2
BG586002|BG586002.1 EST487767 MHAM Medicago truncatula/Glomus versiforme mixed EST library cDNA clone pMHAM-41K9 5' end, mRNA sequence.    74   3e-12  2
dna update 2003.11.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GM694469_1(GM694469|pid:none) Sequence 25 from Patent EP1953235.      459   e-127
AJ010466_1(AJ010466|pid:none) Arabidopsis thaliana mRNA for DEAD...   458   e-127
BT083859_1(BT083859|pid:none) Zea mays full-length cDNA clone ZM...   456   e-127
(Q56XG6) RecName: Full=DEAD-box ATP-dependent RNA helicase 15;  ...   455   e-126
GM694505_1(GM694505|pid:none) Sequence 61 from Patent EP1953235....   454   e-126
BT068295_1(BT068295|pid:none) Zea mays full-length cDNA clone ZM...   453   e-126
AL360314_6(AL360314|pid:none) Arabidopsis thaliana DNA chromosom...   453   e-126
(Q5JK84) RecName: Full=DEAD-box ATP-dependent RNA helicase 15;  ...   449   e-124
(Q0JM17) RecName: Full=DEAD-box ATP-dependent RNA helicase 56;  ...   449   e-124
FM992691_22(FM992691|pid:none) Candida dubliniensis CD36 chromos...   434   e-120
protein update 2009. 7. 2
PSORT 

 psg: 0.94  gvh: 0.47  alm: 0.40  top: 0.40  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial

>> prediction for FC-AI06 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AI06E
Full length Seq. 
>FC-AI06E.Seq
GTCATTTGTCAAGCTAAAAGTGGTATGGGTAAAACCGCTGTTTTCGTTTTATCAACTTTA
CAACAAATTGATAACAATCCAAATGGTATTACAACATTAGTATTATGTAATACTAGAGAA
TTAGCATATCAAATTTGTGATGAATTTGATCGTTTCACCAAATATTTACCAAATGTTAAA
ACTGCAGTGATTTATGGTGGTATTCCAGTTCAAACCCATAAAGATTTGATCAAAGAAAAG
AAACCAAACATTATCATTGGTACCCCAGGTCGTATTTTACAATTAGCATCTGAAGGTGCA
CTCTCACTCAAAGAGATTAAACAATTCATTCTTGATGAATGTGATACCATGCTCGAATCA
TTGGATATGAGAAAGGATGTACAAAAGATCTTCAAACTCATCCCAGCCAACAAACAAGTT
ATGATGTTTTCAGCTACCCTCTCTGATACCATTCGTCCAATCTGTAAGAAGTTTATGAAC
AATCCATTGGAAATCTACATCAATGATGGTAGTAAACTCACTCTCCATGGTCTTCAACAA
TACTACGTACCAATCACTGAAGAACAAAAGAATAAAAAACTCATTGAACTCTTGGATTCA
TTAGACTTTAATCAAGCCGTTATTTTCGTCAAATCTGTTAGACGTGCTGATGCCTTAAAT
AAGATCCTCCAAGATATTGGTTTCCCATCCATCTGTATTCATCGTGACCTCGATCAAAAG
GATCGTATCGAACAATACCGTAAATTCAAAAACTTTGAATCTCGTATCATGGTTGCCACT
AATATCTTTGGTCGTGGTATCGATATTGAACGTGTCAATGTCGTCATCAACTACGATATG
GCTGAATCTGCCGATACCTATCTTCACAGAGTAGGTCGTGCTGGTCGTTTTGGTACCAAG
GGTTTAGCCATTTCTTTTGTTCCTTCAAAAGAAGATCCAGTACTTGAACAAGTTCAATCT
AAATTTGTTGTTTCAATTAAAGAACTTGTTGCAACCCCAGATCCAAGTACTTATATGTCT
GGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTTTTTGTTTTAAAATCCATAAAAAAA
AAATAAAAAAAAAAATAAATAAATATCAAGTTAAATTTTAAATTGTTTTTAAAATATA
Length of full length seq. 1138