FC-AI07
Library FC
(Link to library)
Clone ID FC-AI07
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15296-1|Contig-U15756-1
Original site URL
Representative seq. ID FC-AI07P
(Link to Original site)
Representative DNA sequence
>FC-AI07 (FC-AI07Q) /CSM/FC/FC-AI/FC-AI07Q.Seq.d/
CAAAATAAGAATCTTACATTGGAGGATCTTGAAGATAGTTGGGATCGTGGTATACCACGT
ATCAATACATTATTCCAAAAGAGTCGTCATACTTTAGCTTATGATAAAGGTTGGAGAGTA
AGAACCGATTGGAAACAATATCAAGTCCTAAAGAATAATCCATTCTGGTGGACTAATCAA
CGTCATGATGGTAAACTTTGGAATCTTAATAATTATCGTACAGATATCATTCAAGCATTG
GGTGGTGTTGAAGGTATTCTAGAGCATACTCTATTCAAAGGTACTTATTTCCCAACTTGG
GAAGGTTTATTTTGGGAGAAAGCATCAGGTTTCGAAGAGTCTATGAAATATAAAAAACTT
ACACACGCTCAACGTTCAGGTCTTAATCAAATTCCAAATCGTCGTTTCACACTTTGGTGG
TCTCCAACTATCAATCGTAAGAATGTTTATGTTGGTTTCCAAGTTCAATTGGATTTAACA
GGTATTTTCATGCATGGTAAAATTCCAACACTAAAGATTTCATTGATGCAAATTTTCCGT
GCACATCTTTGGCAAAAGATTCATGAATCATTAGTAATGGXXXXXXXXXXGTATCTCACC
ACCCGATAATCCATCAGTAAAAGAAATTCGTTGTATTGTAATGCCACCACAATGGGGTAC
ACCAGTTCATGTAACCGTACCAAATCAATTACCAGAACATGAATATCTCAAAGATTTAGA
ACCATTGGGTTGGATTCACACTCAACCAACTGAATTACCACAACTATCACCACAAGATGT
TATCACTCATTCAAAGATTATGTCTGACAATAAGAGTTGGGATGGTGAGAAAACTGTTAT
CATCTCTGTCTCTGTGGCTTGGCCTTGTACTCTAACTGCTTACCATTTGACTCCAAGTGG
TTTTGAATGGGGTAAAAATAATAAAGATTCTCTCAATTATCAAGGTTATCAACCACAATT
CTATGAGAAGGTTCAAATGTTATTATCCGATCGTTTCCTTGGTTTCTATATGGTACCTGA
TCGTGGTTCTTGGAATTATAATTTCATGGGTGTTAAACATTCCACAAATATGACCTATGG
TTTGAAATTAGATTATCCTAAAAACTTTTATGATGAATCTCATAGACCTGCTCATTTCCA
AAATTGGACTCAAATGGCTCCTTCAGCAAATGATGATGAAGAAAATCAACCTGAAAATGA
AAATTTATTTGAATAATTATAAAAATAATAATTTTCTTTTAAAAACATTTAATAAATAAA
TAAAAAAATAATTAAAAAAAAAAATTTTAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1996.12.24
Translated Amino Acid sequence
QNKNLTLEDLEDSWDRGIPRINTLFQKSRHTLAYDKGWRVRTDWKQYQVLKNNPFWWTNQ
RHDGKLWNLNNYRTDIIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKL
THAQRSGLNQIPNRRFTLWWSPTINRKNVYVGFQVQLDLTGIFMHGKIPTLKISLMQIFR
AHLWQKIHESLVM---

---ISPPDNPSVKEIRCIVMPPQWGTPVHVTVPNQLPEHEYLKDLEPLGWIHTQPTELPQ
LSPQDVITHSKIMSDNKSWDGEKTVIISVSVAWPCTLTAYHLTPSGFEWGKNNKDSLNYQ
GYQPQFYEKVQMLLSDRFLGFYMVPDRGSWNYNFMGVKHSTNMTYGLKLDYPKNFYDESH
RPAHFQNWTQMAPSANDDEENQPENENLFE*l*k**fsfkni**inkkiikkknfkkkkk
kkk


Translated Amino Acid sequence (All Frames)
Frame A:
QNKNLTLEDLEDSWDRGIPRINTLFQKSRHTLAYDKGWRVRTDWKQYQVLKNNPFWWTNQ
RHDGKLWNLNNYRTDIIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKL
THAQRSGLNQIPNRRFTLWWSPTINRKNVYVGFQVQLDLTGIFMHGKIPTLKISLMQIFR
AHLWQKIHESLVM---

---vshhpiihq*kkfvvl*chhngvhqfm*pyqinyqnmniski*nhwvgftlnqlnyh
nyhhkmlsliqrlcltirvgmvrkllsslslwlglvl*llti*lqvvlngvkiikilsii
kvinhnsmrrfkcyypivslvsiwylivvlgiiiswvlnipqi*pmv*n*iilktfmmnl
idlliskiglkwllqqmmmkkinlkmkiylnnyknnnfllktfnk*ikk*lkkkilkkkk
kkkk

Frame B:
kirilhwrilkivgivvyhvsihyskrvvil*lmikvge*epignniks*riihsgglin
vmmvnfgiliiivqisfkhwvvlkvf*silyskvlisqlgkvyfgrkhqvsksl*niknl
htlnvqvlikfqivvshfgglqlsivrmfmlvskfnwi*qvfscmvkfqh*rfh*ckfsv
hifgkrfmnh**w---

---ylttr*siskrnslycnattmgytsscnrtksitrt*isqrfrtigldshstn*itt
tittrcyhsfkdyv*q*elgw*encyhlclcglalysnclpfdskwf*mg*k**rfsqls
rlsttil*egsnviirsfpwflygt*swflel*fhgc*tfhkydlwfeirls*kll**is
*tcsfpkldsngsfsk***rkst*k*kfi*iiikiiiff*khlink*knn*kkkf*kkkk
kkk

Frame C:
k*esyiggs*r*lgswyttyqyiipkessyfsl**rlesknrletisspke*silvd*st
s*w*tles**lsyryhssigwc*rysraysiqrylfpnlgrfilgesirfrrvyei*kty
trstfrs*snskssfhtlvvsnyqs*eclcwfpssigfnryfhaw*nsntkdfidanfpc
tslakds*iisn---

---ISPPDNPSVKEIRCIVMPPQWGTPVHVTVPNQLPEHEYLKDLEPLGWIHTQPTELPQ
LSPQDVITHSKIMSDNKSWDGEKTVIISVSVAWPCTLTAYHLTPSGFEWGKNNKDSLNYQ
GYQPQFYEKVQMLLSDRFLGFYMVPDRGSWNYNFMGVKHSTNMTYGLKLDYPKNFYDESH
RPAHFQNWTQMAPSANDDEENQPENENLFE*l*k**fsfkni**inkkiikkknfkkkkk
kkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AI07 (FC-AI07Q) /CSM/FC/FC-AI/FC-AI07Q.Seq.d/ 2302 0.0
VHA801 (VHA801Q) /CSM/VH/VHA8-A/VHA801Q.Seq.d/ 1191 0.0
AHF452 (AHF452Q) /CSM/AH/AHF4-C/AHF452Q.Seq.d/ 1176 0.0
AHN642 (AHN642Q) /CSM/AH/AHN6-B/AHN642Q.Seq.d/ 1144 0.0
FC-BT07 (FC-BT07Q) /CSM/FC/FC-BT/FC-BT07Q.Seq.d/ 1142 0.0
AHI237 (AHI237Q) /CSM/AH/AHI2-B/AHI237Q.Seq.d/ 1068 0.0
CFD164 (CFD164Q) /CSM/CF/CFD1-C/CFD164Q.Seq.d/ 737 0.0
SSL142 (SSL142Q) /CSM/SS/SSL1-B/SSL142Q.Seq.d/ 38 0.33
SLE396 (SLE396Q) /CSM/SL/SLE3-D/SLE396Q.Seq.d/ 38 0.33
VSF593 (VSF593Q) /CSM/VS/VSF5-D/VSF593Q.Seq.d/ 36 1.3

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 1199 0.0 2
AF397148|AF397148.1 Paramecium tetraurelia macronuclear pre-mRNA processing factor 8 gene, complete cds. 119 3e-50 8
BG558271|BG558271.1 RHIZ2_65_B08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA sequence. 147 1e-39 3
BE050120|BE050120.1 za57b04.g1 Maize Glume cDNAs Library Zea mays cDNA clone za57b04 5', mRNA sequence. 125 5e-37 2
L14433|L14433.1 C. elegans cosmid C50C3. 141 7e-37 8
AY051826|AY051826.1 Drosophila melanogaster LD33339 full length cDNA. 94 2e-35 3
AB023482|AB023482.2 Oryza sativa genomic DNA, chromosome 6, clone P0680A03. 68 1e-34 7
BJ124209|BJ124209.1 Caenorhabditis elegans cDNA clone:yk1308g02 : 5' end, single read. 129 3e-33 4
AC015208|AC015208.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces. 94 4e-33 3
AC124144|AC124144.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099P06, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces. 72 1e-31 9
dna update 2003. 7.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q8T295) RecName: Full=Pre-mRNA-processing-splicing factor 8 hom... 420 e-116
AK099780_1(AK099780|pid:none) Oryza sativa Japonica Group cDNA c... 394 e-108
AB023482_13(AB023482|pid:none) Oryza sativa Japonica Group genom... 394 e-108
BC064370_1(BC064370|pid:none) Homo sapiens PRP8 pre-mRNA process... 392 e-107
BC034648_1(BC034648|pid:none) Mus musculus pre-mRNA processing f... 392 e-107
AK296344_1(AK296344|pid:none) Homo sapiens cDNA FLJ57882 complet... 392 e-107
AL591496_12(AL591496|pid:none) Mouse DNA sequence from clone RP2... 392 e-107
AB007510_1(AB007510|pid:none) Homo sapiens mRNA for PRP8 protein... 392 e-107
(Q99PV0) RecName: Full=Pre-mRNA-processing-splicing factor 8; Al... 392 e-107
AE013599_1462(AE013599|pid:none) Drosophila melanogaster chromos... 392 e-107
protein update 2009. 4.13
PSORT

psg: 0.75 gvh: 0.37 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
28.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for FC-AI07 is cyt

5' end seq. ID FC-AI07F
5' end seq.
>FC-AI07F.Seq
CAAAATAAGAATCTTACATTGGAGGATCTTGAAGATAGTTGGGATCGTGGTATACCACGT
ATCAATACATTATTCCAAAAGAGTCGTCATACTTTAGCTTATGATAAAGGTTGGAGAGTA
AGAACCGATTGGAAACAATATCAAGTCCTAAAGAATAATCCATTCTGGTGGACTAATCAA
CGTCATGATGGTAAACTTTGGAATCTTAATAATTATCGTACAGATATCATTCAAGCATTG
GGTGGTGTTGAAGGTATTCTAGAGCATACTCTATTCAAAGGTACTTATTTCCCAACTTGG
GAAGGTTTATTTTGGGAGAAAGCATCAGGTTTCGAAGAGTCTATGAAATATAAAAAACTT
ACACACGCTCAACGTTCAGGTCTTAATCAAATTCCAAATCGTCGTTTCACACTTTGGTGG
TCTCCAACTATCAATCGTAAGAATGTTTATGTTGGTTTCCAAGTTCAATTGGATTTAACA
GGTATTTTCATGCATGGTAAAATTCCAACACTAAAGATTTCATTGATGCAAATTTTCCGT
GCACATCTTTGGCAAAAGATTCATGAATCATTAGTAATGG----------
Length of 5' end seq. 580
3' end seq. ID FC-AI07Z
3' end seq.
>FC-AI07Z.Seq
----------GTATCTCACCACCCGATAATCCATCAGTAAAAGAAATTCGTTGTATTGTA
ATGCCACCACAATGGGGTACACCAGTTCATGTAACCGTACCAAATCAATTACCAGAACAT
GAATATCTCAAAGATTTAGAACCATTGGGTTGGATTCACACTCAACCAACTGAATTACCA
CAACTATCACCACAAGATGTTATCACTCATTCAAAGATTATGTCTGACAATAAGAGTTGG
GATGGTGAGAAAACTGTTATCATCTCTGTCTCTGTGGCTTGGCCTTGTACTCTAACTGCT
TACCATTTGACTCCAAGTGGTTTTGAATGGGGTAAAAATAATAAAGATTCTCTCAATTAT
CAAGGTTATCAACCACAATTCTATGAGAAGGTTCAAATGTTATTATCCGATCGTTTCCTT
GGTTTCTATATGGTACCTGATCGTGGTTCTTGGAATTATAATTTCATGGGTGTTAAACAT
TCCACAAATATGACCTATGGTTTGAAATTAGATTATCCTAAAAACTTTTATGATGAATCT
CATAGACCTGCTCATTTCCAAAATTGGACTCAAATGGCTCCTTCAGCAAATGATGATGAA
GAAAATCAACCTGAAAATGAAAATTTATTTGAATAATTATAAAAATAATAATTTTCTTTT
AAAAACATTTAATAAATAAATAAAAAAATAATTAAAAAAAAAAATTTTAAAAAAAAAAAA
AAAAAAAAAAAAA
Length of 3' end seq. 723
Connected seq. ID FC-AI07P
Connected seq.
>FC-AI07P.Seq
CAAAATAAGAATCTTACATTGGAGGATCTTGAAGATAGTTGGGATCGTGGTATACCACGT
ATCAATACATTATTCCAAAAGAGTCGTCATACTTTAGCTTATGATAAAGGTTGGAGAGTA
AGAACCGATTGGAAACAATATCAAGTCCTAAAGAATAATCCATTCTGGTGGACTAATCAA
CGTCATGATGGTAAACTTTGGAATCTTAATAATTATCGTACAGATATCATTCAAGCATTG
GGTGGTGTTGAAGGTATTCTAGAGCATACTCTATTCAAAGGTACTTATTTCCCAACTTGG
GAAGGTTTATTTTGGGAGAAAGCATCAGGTTTCGAAGAGTCTATGAAATATAAAAAACTT
ACACACGCTCAACGTTCAGGTCTTAATCAAATTCCAAATCGTCGTTTCACACTTTGGTGG
TCTCCAACTATCAATCGTAAGAATGTTTATGTTGGTTTCCAAGTTCAATTGGATTTAACA
GGTATTTTCATGCATGGTAAAATTCCAACACTAAAGATTTCATTGATGCAAATTTTCCGT
GCACATCTTTGGCAAAAGATTCATGAATCATTAGTAATGG----------GTATCTCACC
ACCCGATAATCCATCAGTAAAAGAAATTCGTTGTATTGTAATGCCACCACAATGGGGTAC
ACCAGTTCATGTAACCGTACCAAATCAATTACCAGAACATGAATATCTCAAAGATTTAGA
ACCATTGGGTTGGATTCACACTCAACCAACTGAATTACCACAACTATCACCACAAGATGT
TATCACTCATTCAAAGATTATGTCTGACAATAAGAGTTGGGATGGTGAGAAAACTGTTAT
CATCTCTGTCTCTGTGGCTTGGCCTTGTACTCTAACTGCTTACCATTTGACTCCAAGTGG
TTTTGAATGGGGTAAAAATAATAAAGATTCTCTCAATTATCAAGGTTATCAACCACAATT
CTATGAGAAGGTTCAAATGTTATTATCCGATCGTTTCCTTGGTTTCTATATGGTACCTGA
TCGTGGTTCTTGGAATTATAATTTCATGGGTGTTAAACATTCCACAAATATGACCTATGG
TTTGAAATTAGATTATCCTAAAAACTTTTATGATGAATCTCATAGACCTGCTCATTTCCA
AAATTGGACTCAAATGGCTCCTTCAGCAAATGATGATGAAGAAAATCAACCTGAAAATGA
AAATTTATTTGAATAATTATAAAAATAATAATTTTCTTTTAAAAACATTTAATAAATAAA
TAAAAAAATAATTAAAAAAAAAAATTTTAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 1303
Full length Seq ID -
Full length Seq. -
Length of full length seq. -