>FC-AI07 (FC-AI07Q) /CSM/FC/FC-AI/FC-AI07Q.Seq.d/
CAAAATAAGAATCTTACATTGGAGGATCTTGAAGATAGTTGGGATCGTGGTATACCACGT
ATCAATACATTATTCCAAAAGAGTCGTCATACTTTAGCTTATGATAAAGGTTGGAGAGTA
AGAACCGATTGGAAACAATATCAAGTCCTAAAGAATAATCCATTCTGGTGGACTAATCAA
CGTCATGATGGTAAACTTTGGAATCTTAATAATTATCGTACAGATATCATTCAAGCATTG
GGTGGTGTTGAAGGTATTCTAGAGCATACTCTATTCAAAGGTACTTATTTCCCAACTTGG
GAAGGTTTATTTTGGGAGAAAGCATCAGGTTTCGAAGAGTCTATGAAATATAAAAAACTT
ACACACGCTCAACGTTCAGGTCTTAATCAAATTCCAAATCGTCGTTTCACACTTTGGTGG
TCTCCAACTATCAATCGTAAGAATGTTTATGTTGGTTTCCAAGTTCAATTGGATTTAACA
GGTATTTTCATGCATGGTAAAATTCCAACACTAAAGATTTCATTGATGCAAATTTTCCGT
GCACATCTTTGGCAAAAGATTCATGAATCATTAGTAATGGXXXXXXXXXXGTATCTCACC
ACCCGATAATCCATCAGTAAAAGAAATTCGTTGTATTGTAATGCCACCACAATGGGGTAC
ACCAGTTCATGTAACCGTACCAAATCAATTACCAGAACATGAATATCTCAAAGATTTAGA
ACCATTGGGTTGGATTCACACTCAACCAACTGAATTACCACAACTATCACCACAAGATGT
TATCACTCATTCAAAGATTATGTCTGACAATAAGAGTTGGGATGGTGAGAAAACTGTTAT
CATCTCTGTCTCTGTGGCTTGGCCTTGTACTCTAACTGCTTACCATTTGACTCCAAGTGG
TTTTGAATGGGGTAAAAATAATAAAGATTCTCTCAATTATCAAGGTTATCAACCACAATT
CTATGAGAAGGTTCAAATGTTATTATCCGATCGTTTCCTTGGTTTCTATATGGTACCTGA
TCGTGGTTCTTGGAATTATAATTTCATGGGTGTTAAACATTCCACAAATATGACCTATGG
TTTGAAATTAGATTATCCTAAAAACTTTTATGATGAATCTCATAGACCTGCTCATTTCCA
AAATTGGACTCAAATGGCTCCTTCAGCAAATGATGATGAAGAAAATCAACCTGAAAATGA
AAATTTATTTGAATAATTATAAAAATAATAATTTTCTTTTAAAAACATTTAATAAATAAA
TAAAAAAATAATTAAAAAAAAAAATTTTAAAAAAAAAAAAAAAAAAAAAAAAA

QNKNLTLEDLEDSWDRGIPRINTLFQKSRHTLAYDKGWRVRTDWKQYQVLKNNPFWWTNQ
RHDGKLWNLNNYRTDIIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKL
THAQRSGLNQIPNRRFTLWWSPTINRKNVYVGFQVQLDLTGIFMHGKIPTLKISLMQIFR
AHLWQKIHESLVM---

---ISPPDNPSVKEIRCIVMPPQWGTPVHVTVPNQLPEHEYLKDLEPLGWIHTQPTELPQ
LSPQDVITHSKIMSDNKSWDGEKTVIISVSVAWPCTLTAYHLTPSGFEWGKNNKDSLNYQ
GYQPQFYEKVQMLLSDRFLGFYMVPDRGSWNYNFMGVKHSTNMTYGLKLDYPKNFYDESH
RPAHFQNWTQMAPSANDDEENQPENENLFE*l*k**fsfkni**inkkiikkknfkkkkk
kkk

Frame A:
QNKNLTLEDLEDSWDRGIPRINTLFQKSRHTLAYDKGWRVRTDWKQYQVLKNNPFWWTNQ
RHDGKLWNLNNYRTDIIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKL
THAQRSGLNQIPNRRFTLWWSPTINRKNVYVGFQVQLDLTGIFMHGKIPTLKISLMQIFR
AHLWQKIHESLVM---

---vshhpiihq*kkfvvl*chhngvhqfm*pyqinyqnmniski*nhwvgftlnqlnyh
nyhhkmlsliqrlcltirvgmvrkllsslslwlglvl*llti*lqvvlngvkiikilsii
kvinhnsmrrfkcyypivslvsiwylivvlgiiiswvlnipqi*pmv*n*iilktfmmnl
idlliskiglkwllqqmmmkkinlkmkiylnnyknnnfllktfnk*ikk*lkkkilkkkk
kkkk

Frame B:
kirilhwrilkivgivvyhvsihyskrvvil*lmikvge*epignniks*riihsgglin
vmmvnfgiliiivqisfkhwvvlkvf*silyskvlisqlgkvyfgrkhqvsksl*niknl
htlnvqvlikfqivvshfgglqlsivrmfmlvskfnwi*qvfscmvkfqh*rfh*ckfsv
hifgkrfmnh**w---

---ylttr*siskrnslycnattmgytsscnrtksitrt*isqrfrtigldshstn*itt
tittrcyhsfkdyv*q*elgw*encyhlclcglalysnclpfdskwf*mg*k**rfsqls
rlsttil*egsnviirsfpwflygt*swflel*fhgc*tfhkydlwfeirls*kll**is
*tcsfpkldsngsfsk***rkst*k*kfi*iiikiiiff*khlink*knn*kkkf*kkkk
kkk

Frame C:
k*esyiggs*r*lgswyttyqyiipkessyfsl**rlesknrletisspke*silvd*st
s*w*tles**lsyryhssigwc*rysraysiqrylfpnlgrfilgesirfrrvyei*kty
trstfrs*snskssfhtlvvsnyqs*eclcwfpssigfnryfhaw*nsntkdfidanfpc
tslakds*iisn---

---ISPPDNPSVKEIRCIVMPPQWGTPVHVTVPNQLPEHEYLKDLEPLGWIHTQPTELPQ
LSPQDVITHSKIMSDNKSWDGEKTVIISVSVAWPCTLTAYHLTPSGFEWGKNNKDSLNYQ
GYQPQFYEKVQMLLSDRFLGFYMVPDRGSWNYNFMGVKHSTNMTYGLKLDYPKNFYDESH
RPAHFQNWTQMAPSANDDEENQPENENLFE*l*k**fsfkni**inkkiikkknfkkkkk
kkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AI07 (FC-AI07Q) /CSM/FC/FC-AI/FC-AI07Q.Seq.d/                     2302   0.0
VHA801 (VHA801Q) /CSM/VH/VHA8-A/VHA801Q.Seq.d/                       1191   0.0
AHF452 (AHF452Q) /CSM/AH/AHF4-C/AHF452Q.Seq.d/                       1176   0.0
AHN642 (AHN642Q) /CSM/AH/AHN6-B/AHN642Q.Seq.d/                       1144   0.0
FC-BT07 (FC-BT07Q) /CSM/FC/FC-BT/FC-BT07Q.Seq.d/                     1142   0.0
AHI237 (AHI237Q) /CSM/AH/AHI2-B/AHI237Q.Seq.d/                       1068   0.0
CFD164 (CFD164Q) /CSM/CF/CFD1-C/CFD164Q.Seq.d/                        737   0.0
SSL142 (SSL142Q) /CSM/SS/SSL1-B/SSL142Q.Seq.d/                         38   0.33
SLE396 (SLE396Q) /CSM/SL/SLE3-D/SLE396Q.Seq.d/                         38   0.33
VSF593 (VSF593Q) /CSM/VS/VSF5-D/VSF593Q.Seq.d/                         36   1.3

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.  1199  0.0  2
AF397148|AF397148.1 Paramecium tetraurelia macronuclear pre-mRNA processing factor 8 gene, complete cds.   119  3e-50  8
BG558271|BG558271.1 RHIZ2_65_B08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA sequence.   147  1e-39  3
BE050120|BE050120.1 za57b04.g1 Maize Glume cDNAs Library Zea mays cDNA clone za57b04 5', mRNA sequence.   125  5e-37  2
L14433|L14433.1 C. elegans cosmid C50C3.   141  7e-37  8
AY051826|AY051826.1 Drosophila melanogaster LD33339 full length cDNA.    94  2e-35  3
AB023482|AB023482.2 Oryza sativa genomic DNA, chromosome 6, clone P0680A03.    68  1e-34  7
BJ124209|BJ124209.1 Caenorhabditis elegans cDNA clone:yk1308g02 : 5' end, single read.   129  3e-33  4
AC015208|AC015208.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    94  4e-33  3
AC124144|AC124144.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099P06, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.    72  1e-31  9

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8T295) RecName: Full=Pre-mRNA-processing-splicing factor 8 hom...   420   e-116
AK099780_1(AK099780|pid:none) Oryza sativa Japonica Group cDNA c...   394   e-108
AB023482_13(AB023482|pid:none) Oryza sativa Japonica Group genom...   394   e-108
BC064370_1(BC064370|pid:none) Homo sapiens PRP8 pre-mRNA process...   392   e-107
BC034648_1(BC034648|pid:none) Mus musculus pre-mRNA processing f...   392   e-107
AK296344_1(AK296344|pid:none) Homo sapiens cDNA FLJ57882 complet...   392   e-107
AL591496_12(AL591496|pid:none) Mouse DNA sequence from clone RP2...   392   e-107
AB007510_1(AB007510|pid:none) Homo sapiens mRNA for PRP8 protein...   392   e-107
(Q99PV0) RecName: Full=Pre-mRNA-processing-splicing factor 8; Al...   392   e-107
AE013599_1462(AE013599|pid:none) Drosophila melanogaster chromos...   392   e-107

 psg: 0.75  gvh: 0.37  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for FC-AI07 is cyt

>FC-AI07F.Seq
CAAAATAAGAATCTTACATTGGAGGATCTTGAAGATAGTTGGGATCGTGGTATACCACGT
ATCAATACATTATTCCAAAAGAGTCGTCATACTTTAGCTTATGATAAAGGTTGGAGAGTA
AGAACCGATTGGAAACAATATCAAGTCCTAAAGAATAATCCATTCTGGTGGACTAATCAA
CGTCATGATGGTAAACTTTGGAATCTTAATAATTATCGTACAGATATCATTCAAGCATTG
GGTGGTGTTGAAGGTATTCTAGAGCATACTCTATTCAAAGGTACTTATTTCCCAACTTGG
GAAGGTTTATTTTGGGAGAAAGCATCAGGTTTCGAAGAGTCTATGAAATATAAAAAACTT
ACACACGCTCAACGTTCAGGTCTTAATCAAATTCCAAATCGTCGTTTCACACTTTGGTGG
TCTCCAACTATCAATCGTAAGAATGTTTATGTTGGTTTCCAAGTTCAATTGGATTTAACA
GGTATTTTCATGCATGGTAAAATTCCAACACTAAAGATTTCATTGATGCAAATTTTCCGT
GCACATCTTTGGCAAAAGATTCATGAATCATTAGTAATGG----------

>FC-AI07Z.Seq
----------GTATCTCACCACCCGATAATCCATCAGTAAAAGAAATTCGTTGTATTGTA
ATGCCACCACAATGGGGTACACCAGTTCATGTAACCGTACCAAATCAATTACCAGAACAT
GAATATCTCAAAGATTTAGAACCATTGGGTTGGATTCACACTCAACCAACTGAATTACCA
CAACTATCACCACAAGATGTTATCACTCATTCAAAGATTATGTCTGACAATAAGAGTTGG
GATGGTGAGAAAACTGTTATCATCTCTGTCTCTGTGGCTTGGCCTTGTACTCTAACTGCT
TACCATTTGACTCCAAGTGGTTTTGAATGGGGTAAAAATAATAAAGATTCTCTCAATTAT
CAAGGTTATCAACCACAATTCTATGAGAAGGTTCAAATGTTATTATCCGATCGTTTCCTT
GGTTTCTATATGGTACCTGATCGTGGTTCTTGGAATTATAATTTCATGGGTGTTAAACAT
TCCACAAATATGACCTATGGTTTGAAATTAGATTATCCTAAAAACTTTTATGATGAATCT
CATAGACCTGCTCATTTCCAAAATTGGACTCAAATGGCTCCTTCAGCAAATGATGATGAA
GAAAATCAACCTGAAAATGAAAATTTATTTGAATAATTATAAAAATAATAATTTTCTTTT
AAAAACATTTAATAAATAAATAAAAAAATAATTAAAAAAAAAAATTTTAAAAAAAAAAAA
AAAAAAAAAAAAA

>FC-AI07P.Seq
CAAAATAAGAATCTTACATTGGAGGATCTTGAAGATAGTTGGGATCGTGGTATACCACGT
ATCAATACATTATTCCAAAAGAGTCGTCATACTTTAGCTTATGATAAAGGTTGGAGAGTA
AGAACCGATTGGAAACAATATCAAGTCCTAAAGAATAATCCATTCTGGTGGACTAATCAA
CGTCATGATGGTAAACTTTGGAATCTTAATAATTATCGTACAGATATCATTCAAGCATTG
GGTGGTGTTGAAGGTATTCTAGAGCATACTCTATTCAAAGGTACTTATTTCCCAACTTGG
GAAGGTTTATTTTGGGAGAAAGCATCAGGTTTCGAAGAGTCTATGAAATATAAAAAACTT
ACACACGCTCAACGTTCAGGTCTTAATCAAATTCCAAATCGTCGTTTCACACTTTGGTGG
TCTCCAACTATCAATCGTAAGAATGTTTATGTTGGTTTCCAAGTTCAATTGGATTTAACA
GGTATTTTCATGCATGGTAAAATTCCAACACTAAAGATTTCATTGATGCAAATTTTCCGT
GCACATCTTTGGCAAAAGATTCATGAATCATTAGTAATGG----------GTATCTCACC
ACCCGATAATCCATCAGTAAAAGAAATTCGTTGTATTGTAATGCCACCACAATGGGGTAC
ACCAGTTCATGTAACCGTACCAAATCAATTACCAGAACATGAATATCTCAAAGATTTAGA
ACCATTGGGTTGGATTCACACTCAACCAACTGAATTACCACAACTATCACCACAAGATGT
TATCACTCATTCAAAGATTATGTCTGACAATAAGAGTTGGGATGGTGAGAAAACTGTTAT
CATCTCTGTCTCTGTGGCTTGGCCTTGTACTCTAACTGCTTACCATTTGACTCCAAGTGG
TTTTGAATGGGGTAAAAATAATAAAGATTCTCTCAATTATCAAGGTTATCAACCACAATT
CTATGAGAAGGTTCAAATGTTATTATCCGATCGTTTCCTTGGTTTCTATATGGTACCTGA
TCGTGGTTCTTGGAATTATAATTTCATGGGTGTTAAACATTCCACAAATATGACCTATGG
TTTGAAATTAGATTATCCTAAAAACTTTTATGATGAATCTCATAGACCTGCTCATTTCCA
AAATTGGACTCAAATGGCTCCTTCAGCAAATGATGATGAAGAAAATCAACCTGAAAATGA
AAATTTATTTGAATAATTATAAAAATAATAATTTTCTTTTAAAAACATTTAATAAATAAA
TAAAAAAATAATTAAAAAAAAAAATTTTAAAAAAAAAAAAAAAAAAAAAAAAA