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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AI08
Library FC
(Link to library)
Clone ID FC-AI08
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14939-1
Original site URL
Representative seq. ID FC-AI08P
(Link to Original site)
Representative DNA sequence 
>FC-AI08 (FC-AI08Q) /CSM/FC/FC-AI/FC-AI08Q.Seq.d/
ATTTGTATATTAAATAAAAAAAAAAAAAATGATGATGAAATCAATCCTTATCACATTTAT
CATTGCATCAGCTTTGTTATCAAGTGTTTTTGCAGATATTGGTGGAAAGAGAACTTTAGT
TGTTCTTGATGATTTATCAATTAAAAAAACTCATTCAACCTTTTTTAAAAATTTAGAAAA
TAAAGGATATAAATTACAATTTGAACAATCAAATACTAAAGTTGTTTTAGAGAAATATGG
AGATTTCAATTTTGATAATTTAATTTTATTCTCACCAACATCAGAATCACTTTCATTCTC
ATCAGCCGATGTAACCAGATTCATCGATGGTGGAAATAATGTATTATTCGCTGGTTCAAA
TGTTATCTCTGAAAATATTCGTGACATTGCAGCTGAATGTGGTATGGAAATTGAAGAAGA
TAAAACACTTATTTTCGATCATTTCAATTATGATAAATCACAATCTGATCATAGTGTTCT
TGTTGCAGATCAATTTATTGATGATTCACCAATTATTTTACAAGGTTTAAATAAACCAAT
TCTTTTTAAAGGTATTGGTCATAAAATTAGAAATAATCCACTCAACTATGCAATTTTAAC
AGGTTCATCAACGCATCTCTGCTAAAGCTATCTCTGGTGTATCACTAAAATTAAXXXXXX
XXXXTCAGGTAATAAAGAATTTGTTGAAAGATTAGTATCATGGACATTCCAAGAAAGAGG
TATTCTTAGAGCTAGTGAATTGGAATTAGTAAAGATTTCAACTGAATCAAATTCAACCGT
TGCACCAGATGTTTTCACAATTAAGGATGAAGTTAAGTATAGTTTAAAAGTTGAGGAATT
TGATGGTATTAAAGGTAAATGGGTACCATATGTAGGTTCACTTCAATTGGAAGTCATCAT
GTTAGACCCATACATTCGTACCTTTATCAAAGGTGATGCCAATGGTCTCTACAAAATTCA
TTTCAAACTTCCAGATGTTTATGGTGTATTCACATTCGAAGCTTCAATTCATAAATCTGG
TTATTCAACTTTGGATCATATTTATCGTAAACCAATCCTCCCATTCCGTCATGACTCTTA
TGAAAGATTCATTCCAGCTGCTTTCCCATATTATGCAACTTGTTTCTCTATGCTCATTGG
TACTTTTATTTTCAGTATCATTTTCTTATTTAACAAAGATCAATTAAATAAATAAAATAA
TATAAAAATAAAGTATTAAGAAATAAA
sequence update 1996.12.24
Translated Amino Acid sequence 
lyik*kkkk***nqslshlslhqlcyqvflqilverel*lflmiyqlkkliqpflki*ki
kdinynlnnqilklf*rnmeisilii*fyshqhqnhfhshqpm*pdssmveimyyslvqm
lslkifvtlqlnvvwklkkikhlfsiisiminhnliivfllqinllmihqlfykv*inqf
flkvlvikleiihstmqf*QVHQRISAKAISGVSLKL---

---SGNKEFVERLVSWTFQERGILRASELELVKISTESNSTVAPDVFTIKDEVKYSLKVE
EFDGIKGKWVPYVGSLQLEVIMLDPYIRTFIKGDANGLYKIHFKLPDVYGVFTFEASIHK
SGYSTLDHIYRKPILPFRHDSYERFIPAAFPYYATCFSMLIGTFIFSIIFLFNKDQLNK*
nnikiky*ei
Translated Amino Acid sequence (All Frames) 
Frame A:
icilnkkkknddeinpyhiyhcisfvikcfcrywwkenfscs**fin*knsfnlf*kfrk
*ri*iti*tiky*scfreiwrfqf**fnfiltniritfilisrcnqihrwwk*ciirwfk
cyl*kys*hcs*mwygn*rr*ntyfrsfql**iti*s*csccrsiy**ftnyftrfk*tn
sf*ryws*n*k*stqlcnfnrfinasllklslvyh*n*---

---SGNKEFVERLVSWTFQERGILRASELELVKISTESNSTVAPDVFTIKDEVKYSLKVE
EFDGIKGKWVPYVGSLQLEVIMLDPYIRTFIKGDANGLYKIHFKLPDVYGVFTFEASIHK
SGYSTLDHIYRKPILPFRHDSYERFIPAAFPYYATCFSMLIGTFIFSIIFLFNKDQLNK*
nnikiky*ei

Frame B:
fvy*ikkkkmmmksilitfiiasallssvfadiggkrtlvvlddlsikkthstffknlen
kgyklqfeqsntkvvlekygdfnfdnlilfsptseslsfssadvtrfidggnnvlfagsn
visenirdiaaecgmeieedktlifdhfnydksqsdhsvlvadqfiddspiilqglnkpi
lfkgighkirnnplnyailtgssthlc*sylwcitki---

---qviknllkd*yhghskkevflelvnwn**rfqlnqiqplhqmfsqlrmklsiv*klr
nlmvlkvngyhm*vhfnwkssc*thtfvplskvmpmvstkfisnfqmfmvyshsklqfin
lviqlwiifivnqsshsvmtlmkdsfqllshimqlvslcslvllfsvsfsyltkin*ink
ii*k*sikk*

Frame C:
lyik*kkkk***nqslshlslhqlcyqvflqilverel*lflmiyqlkkliqpflki*ki
kdinynlnnqilklf*rnmeisilii*fyshqhqnhfhshqpm*pdssmveimyyslvqm
lslkifvtlqlnvvwklkkikhlfsiisiminhnliivfllqinllmihqlfykv*inqf
flkvlvikleiihstmqf*QVHQRISAKAISGVSLKL---

---r**ric*kisimdiprkrys*s**igiskdfn*ikfnrctrcfhn*g*s*v*fks*g
i*wy*r*mgticrftsigshhvrpihsylyqr*cqwslqnsfqtsrclwcihirsfns*i
wlfnfgsyls*tnppips*ll*kihsscfpilcnlflyahwyfyfqyhfli*qrsik*ik
*yknkvlrnk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AI08 (FC-AI08Q) /CSM/FC/FC-AI/FC-AI08Q.Seq.d/                     2181   0.0
VFM563 (VFM563Q) /CSM/VF/VFM5-C/VFM563Q.Seq.d/                       1144   0.0
VSB591 (VSB591Q) /CSM/VS/VSB5-D/VSB591Q.Seq.d/                       1023   0.0
AFE585 (AFE585Q) /CSM/AF/AFE5-D/AFE585Q.Seq.d/                       1023   0.0
AFH549 (AFH549Q) /CSM/AF/AFH5-C/AFH549Q.Seq.d/                       1015   0.0
VFK344 (VFK344Q) /CSM/VF/VFK3-B/VFK344Q.Seq.d/                        995   0.0
VFG326 (VFG326Q) /CSM/VF/VFG3-B/VFG326Q.Seq.d/                        890   0.0
VFI503 (VFI503Q) /CSM/VF/VFI5-A/VFI503Q.Seq.d/                        842   0.0
AFD862 (AFD862Q) /CSM/AF/AFD8-C/AFD862Q.Seq.d/                        698   0.0
SFB271 (SFB271Q) /CSM/SF/SFB2-C/SFB271Q.Seq.d/                        676   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BU882016|BU882016.1 UM70TE07 Populus flower cDNA library Populus balsamifera subsp. trichocarpa cDNA 5 prime, mRNA sequence.    50  0.064  1
BU497419|BU497419.1 PfESToab63a07.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q06167 Q06167 ANTIGENIC PROTEIN PFEMP2 ;, mRNA sequence.    46  0.084  2
BQ410971|BQ410971.1 GA__Ed0035G08r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0035G08r, mRNA sequence.    42  0.11  2
BQ416235|BQ416235.1 GA__Ed0108F03r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0108F03r, mRNA sequence.    38  0.11  2
BE054138|BE054138.2 GA__Ea0004G20f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0004G20f, mRNA sequence.    42  0.13  2
AC026113|AC026113.25 Homo sapiens 12 BAC RP11-756G20 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    44  0.18  3
AC140694|AC140694.3 Rattus norvegicus clone CH230-155H13, WORKING DRAFT SEQUENCE, 46 unordered pieces.    48  0.25  1
AC103714|AC103714.1 Homo sapiens chromosome 8 clone RP11-262E8 map 8, LOW-PASS SEQUENCE SAMPLING.    48  0.25  1
BQ456442|BQ456442.1 ke30h02.y1 Dirofilaria immitis adult pAMP1 v1 Dirofilaria immitis cDNA 5' similar to SW:OST4_CAEEL P45971 PROBABLE DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE 48 KD SUBUNIT PRECURSOR ;, mRNA sequence.    48  0.25  1
AC097233|AC097233.6 Rattus norvegicus clone CH230-197F16, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    42  0.27  4
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E62) RecName: Full=Dolichyl-diphosphooligosaccharide--protei...   676   0.0
(Q5R501) RecName: Full=Dolichyl-diphosphooligosaccharide--protei...   239   2e-61
AK315633_1(AK315633|pid:none) Homo sapiens cDNA, FLJ96720, Homo ...   238   2e-61
AL391357_7(AL391357|pid:none) Human DNA sequence from clone RP11...   238   2e-61
A44654(S66254;A44654)dolichyl-diphosphooligosaccharide-protein g...   237   5e-61
(B1H3C9) RecName: Full=Dolichyl-diphosphooligosaccharide--protei...   234   4e-60
BC149546_1(BC149546|pid:none) Bos taurus dolichyl-diphosphooligo...   234   4e-60
D89060_1(D89060|pid:none) Homo sapiens DNA for oligosaccharyltra...   234   4e-60
EF145704_1(EF145704|pid:none) Populus trichocarpa clone WS0112_M...   223   1e-56
(Q6NYS8) RecName: Full=Dolichyl-diphosphooligosaccharide--protei...   220   7e-56
protein update 2009. 4.13
PSORT 

 psg: 0.79  gvh: 0.35  alm: 0.22  top: 0.43  tms: 0.07  mit: 0.35  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: nuclear
	 16.0 %: cytoplasmic
	 16.0 %: vesicles of secretory system
	 12.0 %: Golgi
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum
	  4.0 %: vacuolar

>> prediction for FC-AI08 is nuc
5' end seq. ID FC-AI08F
5' end seq. 
>FC-AI08F.Seq
ATTTGTATATTAAATAAAAAAAAAAAAAATGATGATGAAATCAATCCTTATCACATTTAT
CATTGCATCAGCTTTGTTATCAAGTGTTTTTGCAGATATTGGTGGAAAGAGAACTTTAGT
TGTTCTTGATGATTTATCAATTAAAAAAACTCATTCAACCTTTTTTAAAAATTTAGAAAA
TAAAGGATATAAATTACAATTTGAACAATCAAATACTAAAGTTGTTTTAGAGAAATATGG
AGATTTCAATTTTGATAATTTAATTTTATTCTCACCAACATCAGAATCACTTTCATTCTC
ATCAGCCGATGTAACCAGATTCATCGATGGTGGAAATAATGTATTATTCGCTGGTTCAAA
TGTTATCTCTGAAAATATTCGTGACATTGCAGCTGAATGTGGTATGGAAATTGAAGAAGA
TAAAACACTTATTTTCGATCATTTCAATTATGATAAATCACAATCTGATCATAGTGTTCT
TGTTGCAGATCAATTTATTGATGATTCACCAATTATTTTACAAGGTTTAAATAAACCAAT
TCTTTTTAAAGGTATTGGTCATAAAATTAGAAATAATCCACTCAACTATGCAATTTTAAC
AGGTTCATCAACGCATCTCTGCTAAAGCTATCTCTGGTGTATCACTAAAATTAA------
----
Length of 5' end seq. 654
3' end seq. ID FC-AI08Z
3' end seq. 
>FC-AI08Z.Seq
----------TCAGGTAATAAAGAATTTGTTGAAAGATTAGTATCATGGACATTCCAAGA
AAGAGGTATTCTTAGAGCTAGTGAATTGGAATTAGTAAAGATTTCAACTGAATCAAATTC
AACCGTTGCACCAGATGTTTTCACAATTAAGGATGAAGTTAAGTATAGTTTAAAAGTTGA
GGAATTTGATGGTATTAAAGGTAAATGGGTACCATATGTAGGTTCACTTCAATTGGAAGT
CATCATGTTAGACCCATACATTCGTACCTTTATCAAAGGTGATGCCAATGGTCTCTACAA
AATTCATTTCAAACTTCCAGATGTTTATGGTGTATTCACATTCGAAGCTTCAATTCATAA
ATCTGGTTATTCAACTTTGGATCATATTTATCGTAAACCAATCCTCCCATTCCGTCATGA
CTCTTATGAAAGATTCATTCCAGCTGCTTTCCCATATTATGCAACTTGTTTCTCTATGCT
CATTGGTACTTTTATTTTCAGTATCATTTTCTTATTTAACAAAGATCAATTAAATAAATA
AAATAATATAAAAATAAAGTATTAAGAAATAAA
Length of 3' end seq. 563
Connected seq. ID FC-AI08P
Connected seq. 
>FC-AI08P.Seq
ATTTGTATATTAAATAAAAAAAAAAAAAATGATGATGAAATCAATCCTTATCACATTTAT
CATTGCATCAGCTTTGTTATCAAGTGTTTTTGCAGATATTGGTGGAAAGAGAACTTTAGT
TGTTCTTGATGATTTATCAATTAAAAAAACTCATTCAACCTTTTTTAAAAATTTAGAAAA
TAAAGGATATAAATTACAATTTGAACAATCAAATACTAAAGTTGTTTTAGAGAAATATGG
AGATTTCAATTTTGATAATTTAATTTTATTCTCACCAACATCAGAATCACTTTCATTCTC
ATCAGCCGATGTAACCAGATTCATCGATGGTGGAAATAATGTATTATTCGCTGGTTCAAA
TGTTATCTCTGAAAATATTCGTGACATTGCAGCTGAATGTGGTATGGAAATTGAAGAAGA
TAAAACACTTATTTTCGATCATTTCAATTATGATAAATCACAATCTGATCATAGTGTTCT
TGTTGCAGATCAATTTATTGATGATTCACCAATTATTTTACAAGGTTTAAATAAACCAAT
TCTTTTTAAAGGTATTGGTCATAAAATTAGAAATAATCCACTCAACTATGCAATTTTAAC
AGGTTCATCAACGCATCTCTGCTAAAGCTATCTCTGGTGTATCACTAAAATTAA------
----TCAGGTAATAAAGAATTTGTTGAAAGATTAGTATCATGGACATTCCAAGAAAGAGG
TATTCTTAGAGCTAGTGAATTGGAATTAGTAAAGATTTCAACTGAATCAAATTCAACCGT
TGCACCAGATGTTTTCACAATTAAGGATGAAGTTAAGTATAGTTTAAAAGTTGAGGAATT
TGATGGTATTAAAGGTAAATGGGTACCATATGTAGGTTCACTTCAATTGGAAGTCATCAT
GTTAGACCCATACATTCGTACCTTTATCAAAGGTGATGCCAATGGTCTCTACAAAATTCA
TTTCAAACTTCCAGATGTTTATGGTGTATTCACATTCGAAGCTTCAATTCATAAATCTGG
TTATTCAACTTTGGATCATATTTATCGTAAACCAATCCTCCCATTCCGTCATGACTCTTA
TGAAAGATTCATTCCAGCTGCTTTCCCATATTATGCAACTTGTTTCTCTATGCTCATTGG
TACTTTTATTTTCAGTATCATTTTCTTATTTAACAAAGATCAATTAAATAAATAAAATAA
TATAAAAATAAAGTATTAAGAAATAAA
Length of connected seq. 1217
Full length Seq ID -
Full length Seq. -
Length of full length seq. -