FC-AI12
Library FC
(Link to library)
Clone ID FC-AI12
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15484-1
Original site URL
Representative seq. ID FC-AI12Z
(Link to Original site)
Representative DNA sequence
>FC-AI12 (FC-AI12Q) /CSM/FC/FC-AI/FC-AI12Q.Seq.d/
XXXXXXXXXXTCACGTAAAGTCCAAATCCCAGAAAATGTCACCGTTGATGTTAAGGGTCG
TTCAGTTAAGGTAACTGGTCCACGTGGTACCTTATCAAAATCATTCGATCATGCTTCAGT
CGATATCAACTTAGTTGGTAAAAAAGAATTAACTGTTGACTTATGGTTCGGTAACAGAAA
ACAAATTGCCTGTATCAAAACCATCACCTCTATCATTGAAAATATGATCACTGGTGTTAC
CAAAGGTTACGAATACAAGATGAGATTTGTCTATGCACATTTCCCAATCAACGTTGCTGT
CACTGATGGTGGTCGTGTTGTTGAAATCCGTAATTTCTTTGGTGAAAAGATCGTTCGTCG
TATTGAATTATTAGATGGTATCACCTGTTACCGTAACGAAAAAGCTAAGGATGAAATTGT
TTTAACTGGTAACTCATTAGAACTCCTCTCTCAATCATGTGCTACTATCCAATTAAGATC
TGCCATTAAATACAAGGATGTTAGAAAGTTCTTAGATGGTATCTACGTCTCTGAAAGAAA
CGTCCTCGAATCCAACTAAATAAATTAAAGGATATATAGTTTTCTCTTAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAACAAA
sequence update 1996.12. 6
Translated Amino Acid sequence
---RKVQIPENVTVDVKGRSVKVTGPRGTLSKSFDHASVDINLVGKKELTVDLWFGNRKQ
IACIKTITSIIENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNFFGEKIVRRI
ELLDGITCYRNEKAKDEIVLTGNSLELLSQSCATIQLRSAIKYKDVRKFLDGIYVSERNV
LESN*in*riysfllkkkkkkkkkkt


Translated Amino Acid sequence (All Frames)
Frame A:
---hvksksqkmsplmlrvvqlr*lvhvvpyqnhsimlqsist*lvkkn*lltygsvten
klpvskpsplslki*slvlpkvtntr*dlsmhisqstllslmvvvllksvislvkrsfvv
lny*mvspvtvtkklrmklf*lvth*nsslnhvllsn*dlplntrmless*mvstslket
ssnptk*ikgyivfs*kkkkkkkkkkq


Frame B:
---t*spnprkchr*c*gsfs*gnwstwylikiirscfsryqlsw*krinc*lmvr*qkt
nclyqnhhlyh*kydhwcyqrlriqdeiclctfpnqrcch*wwscc*np*flw*kdrssy
*iirwyhllp*rks*g*ncfnw*lirtplsimcyypikich*iqgc*kvlrwylrl*kkr
priqlnklkdi*fslkkkkkkkkkknk


Frame C:
---RKVQIPENVTVDVKGRSVKVTGPRGTLSKSFDHASVDINLVGKKELTVDLWFGNRKQ
IACIKTITSIIENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNFFGEKIVRRI
ELLDGITCYRNEKAKDEIVLTGNSLELLSQSCATIQLRSAIKYKDVRKFLDGIYVSERNV
LESN*in*riysfllkkkkkkkkkkt


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-BQ13 (FC-BQ13Q) /CSM/FC/FC-BQ/FC-BQ13Q.Seq.d/ 1146 0.0
FC-BK01 (FC-BK01Q) /CSM/FC/FC-BK/FC-BK01Q.Seq.d/ 1146 0.0
FC-AT16 (FC-AT16Q) /CSM/FC/FC-AT/FC-AT16Q.Seq.d/ 1146 0.0
FC-AI12 (FC-AI12Q) /CSM/FC/FC-AI/FC-AI12Q.Seq.d/ 1146 0.0
FC-AG22 (FC-AG22Q) /CSM/FC/FC-AG/FC-AG22Q.Seq.d/ 1146 0.0
FC-129 (FC-129Q) /CSM/CG/CG-FC/FC-129Q.Seq.d/ 1146 0.0
VHH257 (VHH257Q) /CSM/VH/VHH2-C/VHH257Q.Seq.d/ 1140 0.0
FC-BD12 (FC-BD12Q) /CSM/FC/FC-BD/FC-BD12Q.Seq.d/ 1138 0.0
VHP355 (VHP355Q) /CSM/VH/VHP3-C/VHP355Q.Seq.d/ 1106 0.0
VHG320 (VHG320Q) /CSM/VH/VHG3-A/VHG320Q.Seq.d/ 1090 0.0

own update 2002.10. 6
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL403786|AL403786.1 T7 end of clone AT0AA010H02 of library AT0AA from strain CBS 4311 of Saccharomyces servazzii. 86 1e-26 3
BI743395|BI743395.1 kx43e10.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to WP:CE01380 R13A5.8 Ribosomal protein L9 ;, mRNA sequence. 74 1e-16 3
AX073240|AX073240.1 Sequence 351 from Patent WO0102550. 94 2e-15 1
CA941684|CA941684.1 ir34g01.y1 HR85 islet Homo sapiens cDNA clone IMAGE:6547201 5' similar to SW:RL9_HUMAN P32969 60S RIBOSOMAL PROTEIN L9. [1] ;, mRNA sequence. 46 6e-14 4
BU678300|BU678300.1 UI-CF-EC0-abi-k-05-0-UI.s1 UI-CF-EC0 Homo sapiens cDNA clone UI-CF-EC0-abi-k-05-0-UI 3', mRNA sequence. 46 1e-13 4
BU685343|BU685343.1 UI-CF-DU1-aav-f-21-0-UI.s2 UI-CF-DU1 Homo sapiens cDNA clone UI-CF-DU1-aav-f-21-0-UI 3', mRNA sequence. 46 1e-13 4
AI000618|AI000618.1 os55a04.s1 NCI_CGAP_Br2 Homo sapiens cDNA clone IMAGE:1609230 3' similar to gb:D14531 60S RIBOSOMAL PROTEIN L9 (HUMAN);, mRNA sequence. 46 2e-13 3
AX260625|AX260625.1 Sequence 276 from Patent WO0173027. 46 2e-13 3
CD048077|CD048077.1 AGENCOURT_13978149 NIH_MGC_172 Homo sapiens cDNA 5', mRNA sequence. 46 2e-13 4
BQ316601|BQ316601.1 CM1-CT0315-091299-063-f11 CT0315 Homo sapiens cDNA, mRNA sequence. 46 3e-13 3
dna update 2003. 7.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

DQ214104_1(DQ214104|pid:none) Taeniopygia guttata clone 0061P000... 209 4e-53
DQ214105_1(DQ214105|pid:none) Taeniopygia guttata clone 0058P005... 209 4e-53
BT070958_1(BT070958|pid:none) Picea sitchensis clone WS02761_O04... 209 5e-53
AC119415_28(AC119415|pid:none) Medicago truncatula clone mth2-27... 209 6e-53
(P32969) RecName: Full=60S ribosomal protein L9; &AB062431_1(AB... 208 1e-52
AY892436_1(AY892436|pid:none) Synthetic construct Homo sapiens c... 208 1e-52
(P51410) RecName: Full=60S ribosomal protein L9; &AF260271_1(AF... 208 1e-52
DQ000524_1(DQ000524|pid:none) Synthetic construct clone PSF:1065... 208 1e-52
(P17077) RecName: Full=60S ribosomal protein L9; &BC086561_1(BC... 208 1e-52
(Q5R9Q7) RecName: Full=60S ribosomal protein L9; &CR859325_1(CR... 207 2e-52
protein update 2009. 4.13
PSORT

psg: 0.62 gvh: 0.33 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for FC-AI12 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-AI12Z
3' end seq.
>FC-AI12Z.Seq
----------TCACGTAAAGTCCAAATCCCAGAAAATGTCACCGTTGATGTTAAGGGTCG
TTCAGTTAAGGTAACTGGTCCACGTGGTACCTTATCAAAATCATTCGATCATGCTTCAGT
CGATATCAACTTAGTTGGTAAAAAAGAATTAACTGTTGACTTATGGTTCGGTAACAGAAA
ACAAATTGCCTGTATCAAAACCATCACCTCTATCATTGAAAATATGATCACTGGTGTTAC
CAAAGGTTACGAATACAAGATGAGATTTGTCTATGCACATTTCCCAATCAACGTTGCTGT
CACTGATGGTGGTCGTGTTGTTGAAATCCGTAATTTCTTTGGTGAAAAGATCGTTCGTCG
TATTGAATTATTAGATGGTATCACCTGTTACCGTAACGAAAAAGCTAAGGATGAAATTGT
TTTAACTGGTAACTCATTAGAACTCCTCTCTCAATCATGTGCTACTATCCAATTAAGATC
TGCCATTAAATACAAGGATGTTAGAAAGTTCTTAGATGGTATCTACGTCTCTGAAAGAAA
CGTCCTCGAATCCAACTAAATAAATTAAAGGATATATAGTTTTCTCTTAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAACAAA
Length of 3' end seq. 614
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -