>FC-AI17 (FC-AI17Q) /CSM/FC/FC-AI/FC-AI17Q.Seq.d/
GGCAAACATTGCAACCGTTGGTGATTTCCTCAAGGCTGACACTGTCGTTCCAAAGATGAT
TATCACCTACAACAAACGTAAACAAGGTACCGACTATTTGAAGGCTGTCATTGGTCCAAT
CTTGTCTAATGTCATCAAACAAGAGTTGAATCTCGAGTTGAAACCAAATTTAGTCTATGC
TGCCATCATCTCTGAACAAGAGATTAGAACCGGTGAAAAGAGTACACTCGATAGAAATGT
CTCACATGAGAAAGCTTTAGAAGTTCCAGAGGTTACCAAAACTATCAAGGCTCGTGTCGA
TCAATTGATCTCCATTTGTGAACAATTCCTCGATGGTATCATTAGTTCATTGAATCGTCT
TCCATATGGTATTCGTTGGATTTGTAAACAAATCTATCAAATCGCTGAAAAGAATTTCAC
CAAATCAACTCAAGATGAAATTCTCAAGGTCATTGGTTACTTTATTTACTATCGTTTCAT
TCAAGTTGCCATGGTCTCTCCAGAGGAATATGATTTGGTCGGTCGTGAAATTCATCCAAC
CGCCCGTAAGAATTTAATCAATGTATCAAAAGTATTACAAGCACTTTXXXXXXXXXXTGA
AGAATATAATCTCACCACCTCTGCCGATAATTATTCCTCTTTCCTCAAGGCAGTCGCACT
CGAAGTAGTTAATCGTGCTGAAATTCGTGAACAACAAAAGAAGGAGAAACAAAGATTAAC
CACCTCTTTGAATAATCTTCGTAAACATCAAAAATATCTCAACGAACAAATCGCTCAATA
CAATCAATACCTCCAAGATTGTCGTCTCAAACATTATCAAAACAAGAGCAAAAAGAAGAA
GAAGGGAGATGGTGCCAAAGTTGGTCCTTTCAAATTCAGTTTCAGCGAACTTCACAAGAA
AGGTGTCATCGTCGACTCTGAAGTTCCTCAAATCACCAGAAAGAAGATTAAATTTGTCAT
TAGCTCTGATACCGTTGGTGTGTTTGATGTCTCTGCTAAAATGGCTGGTATCGATGTTCA
AACTATGCGTTTGGAACTTGATGACCTTTTAGAACTCAATTCAATTGGCACCACAACTTT
AGAATTAGATCAAATCACTTTAGATGTTAATATGACCATACATTTATTAAACAAACTTTT
CTTATATTAGTCAACTTAATAAATAAAAAATAAATAAAAAAATATTGTTGTATTAAAGAA
TAAAAAAAAAAAAAAAAAAAAA

ANIATVGDFLKADTVVPKMIITYNKRKQGTDYLKAVIGPILSNVIKQELNLELKPNLVYA
AIISEQEIRTGEKSTLDRNVSHEKALEVPEVTKTIKARVDQLISICEQFLDGIISSLNRL
PYGIRWICKQIYQIAEKNFTKSTQDEILKVIGYFIYYRFIQVAMVSPEEYDLVGREIHPT
ARKNLINVSKVLQAL---

---EEYNLTTSADNYSSFLKAVALEVVNRAEIREQQKKEKQRLTTSLNNLRKHQKYLNEQ
IAQYNQYLQDCRLKHYQNKSKKKKKGDGAKVGPFKFSFSELHKKGVIVDSEVPQITRKKI
KFVISSDTVGVFDVSAKMAGIDVQTMRLELDDLLELNSIGTTTLELDQITLDVNMTIHLL
NKLFLY*st**iknk*knivvlknkkkkkkk

Frame A:
gkhcnrw*fpqg*hcrskddyhlqqt*tryrlfegchwsnlv*chqtrvesrvetkfslc
chhl*trd*nr*keytr*kclt*esfrssrgyqnyqgscrsidlhl*tiprwyh*fiess
siwysldl*tnlsnr*kefhqinsr*nsqghwllyllsfhsschglsrgi*fgrs*nssn
rp*efnqciksitst---

---*ri*shhlcr*lflfpqgsrtrss*sc*ns*ttkegetkinhlfe*ss*tskisqrt
nrsiqsipprlssqtlskqeqkeeegrwcqswsfqiqfqrtsqerchrrl*sssnhqked
*ich*l*yrwcv*clc*ngwyrcsnyafgt**pfrtqfnwhhnfrirsnhfrc*ydhtfi
kqtflilvnlinkk*ikkyccike*kkkkkk

Frame B:
ANIATVGDFLKADTVVPKMIITYNKRKQGTDYLKAVIGPILSNVIKQELNLELKPNLVYA
AIISEQEIRTGEKSTLDRNVSHEKALEVPEVTKTIKARVDQLISICEQFLDGIISSLNRL
PYGIRWICKQIYQIAEKNFTKSTQDEILKVIGYFIYYRFIQVAMVSPEEYDLVGREIHPT
ARKNLINVSKVLQAL---

---EEYNLTTSADNYSSFLKAVALEVVNRAEIREQQKKEKQRLTTSLNNLRKHQKYLNEQ
IAQYNQYLQDCRLKHYQNKSKKKKKGDGAKVGPFKFSFSELHKKGVIVDSEVPQITRKKI
KFVISSDTVGVFDVSAKMAGIDVQTMRLELDDLLELNSIGTTTLELDQITLDVNMTIHLL
NKLFLY*st**iknk*knivvlknkkkkkkk

Frame C:
qtlqplvissrltlsfqr*lspttnvnkvpti*rlslvqsclmssnks*iss*nqi*sml
psslnkrlepvkrvhsiemshmrkl*kfqrlpklsrlvsin*spfvnnssmvslvh*ivf
hmvfvgfvnksikslkrispnqlkmkfsrslvtlftivsfklpwslqrnmiwsvvkfiqp
pvri*smyqkyykhf---

---kniispplpiiiplssrqshsk*livlkfvnnkrrrnkd*ppl*iifvniknistnk
slntintskivvsniiktrakrrrremvpklvlsnsvsanftrkvssstlkflksperrl
nlslaliplvclmsllkwlvsmfklcvwnlmtf*nsiqlapql*n*iksl*mli*pyiy*
tnfsyisqlnk*kinkkilly*rikkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AI17 (FC-AI17Q) /CSM/FC/FC-AI/FC-AI17Q.Seq.d/                     2232   0.0
VHP536 (VHP536Q) /CSM/VH/VHP5-B/VHP536Q.Seq.d/                       1108   0.0
VHH220 (VHH220Q) /CSM/VH/VHH2-A/VHH220Q.Seq.d/                       1108   0.0
SLB820 (SLB820Q) /CSM/SL/SLB8-A/SLB820Q.Seq.d/                       1108   0.0
SHL120 (SHL120Q) /CSM/SH/SHL1-A/SHL120Q.Seq.d/                       1108   0.0
SHK836 (SHK836Q) /CSM/SH/SHK8-B/SHK836Q.Seq.d/                       1108   0.0
SHK407 (SHK407Q) /CSM/SH/SHK4-A/SHK407Q.Seq.d/                       1108   0.0
SHD812 (SHD812Q) /CSM/SH/SHD8-A/SHD812Q.Seq.d/                       1108   0.0
SHD326 (SHD326Q) /CSM/SH/SHD3-B/SHD326Q.Seq.d/                       1108   0.0
SHC344 (SHC344Q) /CSM/SH/SHC3-B/SHC344Q.Seq.d/                       1108   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U81156|U81156.1 Dictyostelium discoideum RasGAP1 (rgaA) gene, complete cds.  1158  0.0  2
L75794|L75794.1 Dictyostelium discoideum RasGTPase-activating protein gene, complete cds.  1158  0.0  3
D88027|D88027.1 Dictyostelium discoideum gene for GAPA, complete cds.    78  2e-22  5
BZ600628|BZ600628.1 WHACM55TR Human MCF7 breast cancer cell line library (MCF7_1) Homo sapiens genomic clone MCF7_1-16I13, DNA sequence.    36  0.073  3
BW248505|BW248505.1 Ciona intestinalis cDNA, clone:citb078a01, 5' end, single read.    48  0.25  1
AC073137|AC073137.7 Homo sapiens BAC clone RP11-703P11 from 7, complete sequence.    48  0.30  4
AC012105|AC012105.2 Homo sapiens clone RP11-45G13, WORKING DRAFT SEQUENCE, 17 unordered pieces.    42  0.36  2
CC491574|CC491574.1 CH240_325I18.T7 CHORI-240 Bos taurus genomic clone CH240_325I18, genomic survey sequence.    44  0.44  2
BX470259|BX470259.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-225N18.    38  0.57  3
AP006431|AP006431.1 Lotus japonicus genomic DNA, chromosome 5, clone:LjT38F20, TM0328.    40  0.91  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81156_1(U81156|pid:none) Dictyostelium discoideum RasGAP1 (rgaA...   379   e-103
AK302981_1(AK302981|pid:none) Homo sapiens cDNA FLJ52376 complet...   132   3e-29
AK303054_1(AK303054|pid:none) Homo sapiens cDNA FLJ50398 complet...   132   3e-29
(Q13576) RecName: Full=Ras GTPase-activating-like protein IQGAP2...   132   3e-29
AY351902_1(AY351902|pid:none) Homo sapiens testis specific IQ mo...   132   3e-29
BC150958_1(BC150958|pid:none) Mus musculus IQ motif containing G...   131   5e-29
AK142813_1(AK142813|pid:none) Mus musculus 15 days embryo head c...   131   5e-29
(Q3UQ44) RecName: Full=Ras GTPase-activating-like protein IQGAP2;     131   5e-29
AK302510_1(AK302510|pid:none) Homo sapiens cDNA FLJ51769 partial...   130   9e-29
AB093561_1(AB093561|pid:none) Xenopus laevis XIQGAP2 mRNA for IQ...   125   3e-27

 psg: 0.68  gvh: 0.40  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.18  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 48.0 %: nuclear
	  4.0 %: mitochondrial

>> prediction for FC-AI17 is cyt

>FC-AI17F.Seq
GGCAAACATTGCAACCGTTGGTGATTTCCTCAAGGCTGACACTGTCGTTCCAAAGATGAT
TATCACCTACAACAAACGTAAACAAGGTACCGACTATTTGAAGGCTGTCATTGGTCCAAT
CTTGTCTAATGTCATCAAACAAGAGTTGAATCTCGAGTTGAAACCAAATTTAGTCTATGC
TGCCATCATCTCTGAACAAGAGATTAGAACCGGTGAAAAGAGTACACTCGATAGAAATGT
CTCACATGAGAAAGCTTTAGAAGTTCCAGAGGTTACCAAAACTATCAAGGCTCGTGTCGA
TCAATTGATCTCCATTTGTGAACAATTCCTCGATGGTATCATTAGTTCATTGAATCGTCT
TCCATATGGTATTCGTTGGATTTGTAAACAAATCTATCAAATCGCTGAAAAGAATTTCAC
CAAATCAACTCAAGATGAAATTCTCAAGGTCATTGGTTACTTTATTTACTATCGTTTCAT
TCAAGTTGCCATGGTCTCTCCAGAGGAATATGATTTGGTCGGTCGTGAAATTCATCCAAC
CGCCCGTAAGAATTTAATCAATGTATCAAAAGTATTACAAGCACTTT----------

>FC-AI17Z.Seq
----------TGAAGAATATAATCTCACCACCTCTGCCGATAATTATTCCTCTTTCCTCA
AGGCAGTCGCACTCGAAGTAGTTAATCGTGCTGAAATTCGTGAACAACAAAAGAAGGAGA
AACAAAGATTAACCACCTCTTTGAATAATCTTCGTAAACATCAAAAATATCTCAACGAAC
AAATCGCTCAATACAATCAATACCTCCAAGATTGTCGTCTCAAACATTATCAAAACAAGA
GCAAAAAGAAGAAGAAGGGAGATGGTGCCAAAGTTGGTCCTTTCAAATTCAGTTTCAGCG
AACTTCACAAGAAAGGTGTCATCGTCGACTCTGAAGTTCCTCAAATCACCAGAAAGAAGA
TTAAATTTGTCATTAGCTCTGATACCGTTGGTGTGTTTGATGTCTCTGCTAAAATGGCTG
GTATCGATGTTCAAACTATGCGTTTGGAACTTGATGACCTTTTAGAACTCAATTCAATTG
GCACCACAACTTTAGAATTAGATCAAATCACTTTAGATGTTAATATGACCATACATTTAT
TAAACAAACTTTTCTTATATTAGTCAACTTAATAAATAAAAAATAAATAAAAAAATATTG
TTGTATTAAAGAATAAAAAAAAAAAAAAA AAAAAA

>FC-AI17P.Seq
GGCAAACATTGCAACCGTTGGTGATTTCCTCAAGGCTGACACTGTCGTTCCAAAGATGAT
TATCACCTACAACAAACGTAAACAAGGTACCGACTATTTGAAGGCTGTCATTGGTCCAAT
CTTGTCTAATGTCATCAAACAAGAGTTGAATCTCGAGTTGAAACCAAATTTAGTCTATGC
TGCCATCATCTCTGAACAAGAGATTAGAACCGGTGAAAAGAGTACACTCGATAGAAATGT
CTCACATGAGAAAGCTTTAGAAGTTCCAGAGGTTACCAAAACTATCAAGGCTCGTGTCGA
TCAATTGATCTCCATTTGTGAACAATTCCTCGATGGTATCATTAGTTCATTGAATCGTCT
TCCATATGGTATTCGTTGGATTTGTAAACAAATCTATCAAATCGCTGAAAAGAATTTCAC
CAAATCAACTCAAGATGAAATTCTCAAGGTCATTGGTTACTTTATTTACTATCGTTTCAT
TCAAGTTGCCATGGTCTCTCCAGAGGAATATGATTTGGTCGGTCGTGAAATTCATCCAAC
CGCCCGTAAGAATTTAATCAATGTATCAAAAGTATTACAAGCACTTT----------TGA
AGAATATAATCTCACCACCTCTGCCGATAATTATTCCTCTTTCCTCAAGGCAGTCGCACT
CGAAGTAGTTAATCGTGCTGAAATTCGTGAACAACAAAAGAAGGAGAAACAAAGATTAAC
CACCTCTTTGAATAATCTTCGTAAACATCAAAAATATCTCAACGAACAAATCGCTCAATA
CAATCAATACCTCCAAGATTGTCGTCTCAAACATTATCAAAACAAGAGCAAAAAGAAGAA
GAAGGGAGATGGTGCCAAAGTTGGTCCTTTCAAATTCAGTTTCAGCGAACTTCACAAGAA
AGGTGTCATCGTCGACTCTGAAGTTCCTCAAATCACCAGAAAGAAGATTAAATTTGTCAT
TAGCTCTGATACCGTTGGTGTGTTTGATGTCTCTGCTAAAATGGCTGGTATCGATGTTCA
AACTATGCGTTTGGAACTTGATGACCTTTTAGAACTCAATTCAATTGGCACCACAACTTT
AGAATTAGATCAAATCACTTTAGATGTTAATATGACCATACATTTATTAAACAAACTTTT
CTTATATTAGTCAACTTAATAAATAAAAAATAAATAAAAAAATATTGTTGTATTAAAGAA
TAAAAAAAAAAAAAAAAAAAAA