FC-AI22
Library FC
(Link to library)
Clone ID FC-AI22
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15369-1|Contig-U15732-1
Original site URL
Representative seq. ID FC-AI22P
(Link to Original site)
Representative DNA sequence
>FC-AI22 (FC-AI22Q) /CSM/FC/FC-AI/FC-AI22Q.Seq.d/
AACCACAATGGTATGTTAAATGTGACGATATGGCAGCACGTGCCGTTAAGGCTGTTCGTG
ATGGTGATTTGAAAATCACTCCAAAGACTCATGAAGTAACTTGGTATCGTTGGTTAGAAG
GTATTAAAGATTGGTGTGTCTCTAGACAATTATGGTGGGGTCATCGTATTCCAGCCTACC
ATTGTATTATCAAAGGTGTTAAATCAAATCCATACGATACCAATCAATGGGTCGTTGGTG
CCAATCAAGAGGAGGCCACTCAAAATGCAATCGAGAAATTTAAACTTTCAAGCAAAGATG
ATATCTTATCATTGGAACAAGATCCAGACGTTTTAGATACTTGGTTCTCAAGTGGTTTAT
TCCCATTCAGTGTTATGGGTTGGCCAGAACAAACTCAAGATATGCAAGATTATTATCCAA
CAAGTCTCTTGGAAACTGGTTCCGATATTTTATTCTTTTGGGTTGCTCGTATGGTTATGA
TGGGTCAACAATTAACTGGTAAATTACCATTTGAACAAGTTTTCCTTCATGCAATGGTTA
GAGATTCACATGGTAGAAAAATGTCAAAATCATTGGGTAACGTXXXXXXXXXXGTATCAA
TCATTACCACGTCGTCCAGAAGATGTCATTCCAACCATTATGTTATGTCCATACCCACAA
TCTCAATCATGTTGGGCCAATTCTGACATTGAGGAAGAAATGAAACAATGTCAAGATATC
ATCAAATCAATTCGTTCCTTCGTGCTACCTATACCATTCCAGCCTCTAAAAAACTTCACA
CTTATCTTCACGTTAAAAATCAAGAGAATCTCGAAACGTTTCACTAAAAACTCTTCATTC
ATTCGTGTTTTAGCTTATGCCTCTGAACTCGAAGTTTCCATTAGTGATGAATCTCGTCCT
GGTTGTATCGTTAATGTTGTCAATGAAAATGTTTCAACCCTTTTAGATGTTAGAGGATCT
GTTGATTTCAATCTTGAAATTGCTCGTCTCGAAACAAAGAAACAACAATTGGTCAAAAAC
TATGAAACTTTAGTTTCAAAAACTACCATACCTTCTTATGATAAAGTTCCACAAAATATC
AGAGATGATAATACTCAAAAAATTAAAGCTTTAGATGAAGAAATTAATATTACAAACAAA
ACCATTGAAAGTTTTACAAAATTAAATATTTAAAATTATAAATAATAATTAATAATAATA
ATAATAAAGTTTTAATTACTAAATTTAGTAATAAATAATAAAATAAAATAAAATAAAATA
AAATAATTTAAAAAAA
sequence update 1996.12.24
Translated Amino Acid sequence
PQWYVKCDDMAARAVKAVRDGDLKITPKTHEVTWYRWLEGIKDWCVSRQLWWGHRIPAYH
CIIKGVKSNPYDTNQWVVGANQEEATQNAIEKFKLSSKDDILSLEQDPDVLDTWFSSGLF
PFSVMGWPEQTQDMQDYYPTSLLETGSDILFFWVARMVMMGQQLTGKLPFEQVFLHAMVR
DSHGRKMSKSLGN---

---YQSLPRRPEDVIPTIMLCPYPQSQSCWANSDIEEEMKQCQDIIKSIRSFVLPIPFQP
LKNFTLIFTLKIKRISKRFTKNSSFIRVLAYASELEVSISDESRPGCIVNVVNENVSTLL
DVRGSVDFNLEIARLETKKQQLVKNYETLVSKTTIPSYDKVPQNIRDDNTQKIKALDEEI
NITNKTIESFTKLNI*nyk**liiiiikf*llnlvinnkik*nkik*fkk


Translated Amino Acid sequence (All Frames)
Frame A:
nhngmlnvtiwqhvplrlfvmvi*kslqrlmk*lgivg*kvlkigvsldnyggvivfqpt
ivlskvlnqihtipingslvpikrrplkmqsrnlnfqakmisyhwnkiqtf*ilgsqvvy
shsvlwvgqnklkickiiiqqvswklvpifysfgllvwl*wvnn*lvnyhlnkfsfmqwl
eihmvekcqnhwvt---

---vsiittssrrchsnhyvmsiptisimlgqf*h*grnetmsryhqinsflratytipa
skklhtylhvknqenletfh*klfihscfslcl*trsfh***isswlyr*ccq*kcfnpf
rc*ric*fqs*ncssrnkettigqkl*nfsfknyhtfl**sstkyqr**yskn*sfr*rn
*yykqnh*kfykikylkl*iiinnnnnkvlitkfsnk**nkik*nkii*k

Frame B:
ttmvc*m*rygstcr*gcs*w*fenhskds*snlvslvrry*rlvcl*timvgssysslp
lyyqrc*iksiryqsmgrwcqsrgghskcnrei*tfkqr*yliigtrsrrfrylvlkwfi
piqcyglartnsryarllsnkslgnwfryfillgcsygydgstinw*iti*tsfpscng*
rftw*knvkiig*r---

---YQSLPRRPEDVIPTIMLCPYPQSQSCWANSDIEEEMKQCQDIIKSIRSFVLPIPFQP
LKNFTLIFTLKIKRISKRFTKNSSFIRVLAYASELEVSISDESRPGCIVNVVNENVSTLL
DVRGSVDFNLEIARLETKKQQLVKNYETLVSKTTIPSYDKVPQNIRDDNTQKIKALDEEI
NITNKTIESFTKLNI*nyk**liiiiikf*llnlvinnkik*nkik*fkk

Frame C:
PQWYVKCDDMAARAVKAVRDGDLKITPKTHEVTWYRWLEGIKDWCVSRQLWWGHRIPAYH
CIIKGVKSNPYDTNQWVVGANQEEATQNAIEKFKLSSKDDILSLEQDPDVLDTWFSSGLF
PFSVMGWPEQTQDMQDYYPTSLLETGSDILFFWVARMVMMGQQLTGKLPFEQVFLHAMVR
DSHGRKMSKSLGN---

---inhyhvvqkmsfqplcyvhthnlnhvgpiltlrkk*nnvkissnqfvpscylyhssl
*ktshlssr*ksresrnvslktlhsfvf*lmplnskfplvmnlvlvvslmlsmkmfqpf*
mledllisilkllvskqrnnnwsktmkl*fqklpyllmikfhkisemiilkklkl*mkkl
ilqtkplkvlqn*ifkiinnn******sfny*i***iik*nkik*nnlkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AI22 (FC-AI22Q) /CSM/FC/FC-AI/FC-AI22Q.Seq.d/ 2234 0.0
VHP692 (VHP692Q) /CSM/VH/VHP6-D/VHP692Q.Seq.d/ 1088 0.0
VHN702 (VHN702Q) /CSM/VH/VHN7-A/VHN702Q.Seq.d/ 1088 0.0
VHJ111 (VHJ111Q) /CSM/VH/VHJ1-A/VHJ111Q.Seq.d/ 1088 0.0
VHA717 (VHA717Q) /CSM/VH/VHA7-A/VHA717Q.Seq.d/ 1088 0.0
SHD476 (SHD476Q) /CSM/SH/SHD4-D/SHD476Q.Seq.d/ 1088 0.0
CHP511 (CHP511Q) /CSM/CH/CHP5-A/CHP511Q.Seq.d/ 1088 0.0
AHC525 (AHC525Q) /CSM/AH/AHC5-B/AHC525Q.Seq.d/ 1080 0.0
SHF791 (SHF791Q) /CSM/SH/SHF7-D/SHF791Q.Seq.d/ 1076 0.0
VHM840 (VHM840Q) /CSM/VH/VHM8-B/VHM840Q.Seq.d/ 1072 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence. 1156 0.0 4
BH156990|BH156990.1 ENTRO16TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 80 2e-26 4
AZ550890|AZ550890.1 ENTEC77TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 80 2e-26 4
CD524693|CD524693.1 kw06f12.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q9U1Q4 Q9U1Q4 Y87G2A.5 PROTEIN. [1] ;, mRNA sequence. 56 2e-15 3
CD421209|CD421209.1 ku80h07.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q9U1Q4 Q9U1Q4 Y87G2A.5 PROTEIN. [1] ;, mRNA sequence. 56 5e-13 3
AX489033|AX489033.1 Sequence 6333 from Patent WO02053728. 44 9e-13 5
AF110955|AF110955.3 Cryptosporidium parvum valyl tRNA synthetase gene, complete cds. 56 1e-11 4
J02719|J02719.1 Yeast (S.cerevisiae) VASI gene encoding valyl-tRNA synthetase. 58 2e-10 4
AL031856|AL031856.1 S.pombe chromosome II cosmid c1734. 56 2e-10 5
AL031852|AL031852.1 S.pombe chromosome II cosmid c1709. 56 2e-10 4
dna update 2003. 7.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q86KU2) RecName: Full=Probable valyl-tRNA synthetase, cytoplasm... 415 e-114
AE013599_1725(AE013599|pid:none) Drosophila melanogaster chromos... 273 1e-71
BC084762_1(BC084762|pid:none) Xenopus laevis hypothetical LOC495... 264 5e-69
BC090426_1(BC090426|pid:none) Danio rerio valyl-tRNA synthetase,... 262 2e-68
EU282356_1(EU282356|pid:none) Sus scrofa valyl-tRNA synthetase (... 260 6e-68
AK167842_1(AK167842|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 258 3e-67
AF087141_1(AF087141|pid:none) Mus musculus uncharacterized long ... 258 3e-67
BC053703_1(BC053703|pid:none) Mus musculus valyl-tRNA synthetase... 258 3e-67
(Q9Z1Q9) RecName: Full=Valyl-tRNA synthetase; EC=6.1.1.... 258 3e-67
AK300033_1(AK300033|pid:none) Homo sapiens cDNA FLJ54383 complet... 257 7e-67
protein update 2009. 4.13
PSORT

psg: 0.75 gvh: 0.32 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: endoplasmic reticulum

>> prediction for FC-AI22 is nuc

5' end seq. ID FC-AI22F
5' end seq.
>FC-AI22F.Seq
AACCACAATGGTATGTTAAATGTGACGATATGGCAGCACGTGCCGTTAAGGCTGTTCGTG
ATGGTGATTTGAAAATCACTCCAAAGACTCATGAAGTAACTTGGTATCGTTGGTTAGAAG
GTATTAAAGATTGGTGTGTCTCTAGACAATTATGGTGGGGTCATCGTATTCCAGCCTACC
ATTGTATTATCAAAGGTGTTAAATCAAATCCATACGATACCAATCAATGGGTCGTTGGTG
CCAATCAAGAGGAGGCCACTCAAAATGCAATCGAGAAATTTAAACTTTCAAGCAAAGATG
ATATCTTATCATTGGAACAAGATCCAGACGTTTTAGATACTTGGTTCTCAAGTGGTTTAT
TCCCATTCAGTGTTATGGGTTGGCCAGAACAAACTCAAGATATGCAAGATTATTATCCAA
CAAGTCTCTTGGAAACTGGTTCCGATATTTTATTCTTTTGGGTTGCTCGTATGGTTATGA
TGGGTCAACAATTAACTGGTAAATTACCATTTGAACAAGTTTTCCTTCATGCAATGGTTA
GAGATTCACATGGTAGAAAAATGTCAAAATCATTGGGTAACGT----------
Length of 5' end seq. 583
3' end seq. ID FC-AI22Z
3' end seq.
>FC-AI22Z.Seq
----------GTATCAATCATTACCACGTCGTCCAGAAGATGTCATTCCAACCATTATGT
TATGTCCATACCCACAATCTCAATCATGTTGGGCCAATTCTGACATTGAGGAAGAAATGA
AACAATGTCAAGATATCATCAAATCAATTCGTTCCTTCGTGCTACCTATACCATTCCAGC
CTCTAAAAAACTTCACACTTATCTTCACGTTAAAAATCAAGAGAATCTCGAAACGTTTCA
CTAAAAACTCTTCATTCATTCGTGTTTTAGCTTATGCCTCTGAACTCGAAGTTTCCATTA
GTGATGAATCTCGTCCTGGTTGTATCGTTAATGTTGTCAATGAAAATGTTTCAACCCTTT
TAGATGTTAGAGGATCTGTTGATTTCAATCTTGAAATTGCTCGTCTCGAAACAAAGAAAC
AACAATTGGTCAAAAACTATGAAACTTTAGTTTCAAAAACTACCATACCTTCTTATGATA
AAGTTCCACAAAATATCAGAGATGATAATACTCAAAAAATTAAAGCTTTAGATGAAGAAA
TTAATATTACAAACAAAACCATTGAAAGTTTTACAAAATTAAATATTTAAAATTATAAAT
AATAATTAATAATAATAATAATAAAGTTTTAATTACTAAATTTAGTAATAAATAATAAAA
TAAAATAAAATAAAATAAAATAATTTAAAAAAA
Length of 3' end seq. 683
Connected seq. ID FC-AI22P
Connected seq.
>FC-AI22P.Seq
AACCACAATGGTATGTTAAATGTGACGATATGGCAGCACGTGCCGTTAAGGCTGTTCGTG
ATGGTGATTTGAAAATCACTCCAAAGACTCATGAAGTAACTTGGTATCGTTGGTTAGAAG
GTATTAAAGATTGGTGTGTCTCTAGACAATTATGGTGGGGTCATCGTATTCCAGCCTACC
ATTGTATTATCAAAGGTGTTAAATCAAATCCATACGATACCAATCAATGGGTCGTTGGTG
CCAATCAAGAGGAGGCCACTCAAAATGCAATCGAGAAATTTAAACTTTCAAGCAAAGATG
ATATCTTATCATTGGAACAAGATCCAGACGTTTTAGATACTTGGTTCTCAAGTGGTTTAT
TCCCATTCAGTGTTATGGGTTGGCCAGAACAAACTCAAGATATGCAAGATTATTATCCAA
CAAGTCTCTTGGAAACTGGTTCCGATATTTTATTCTTTTGGGTTGCTCGTATGGTTATGA
TGGGTCAACAATTAACTGGTAAATTACCATTTGAACAAGTTTTCCTTCATGCAATGGTTA
GAGATTCACATGGTAGAAAAATGTCAAAATCATTGGGTAACGT----------GTATCAA
TCATTACCACGTCGTCCAGAAGATGTCATTCCAACCATTATGTTATGTCCATACCCACAA
TCTCAATCATGTTGGGCCAATTCTGACATTGAGGAAGAAATGAAACAATGTCAAGATATC
ATCAAATCAATTCGTTCCTTCGTGCTACCTATACCATTCCAGCCTCTAAAAAACTTCACA
CTTATCTTCACGTTAAAAATCAAGAGAATCTCGAAACGTTTCACTAAAAACTCTTCATTC
ATTCGTGTTTTAGCTTATGCCTCTGAACTCGAAGTTTCCATTAGTGATGAATCTCGTCCT
GGTTGTATCGTTAATGTTGTCAATGAAAATGTTTCAACCCTTTTAGATGTTAGAGGATCT
GTTGATTTCAATCTTGAAATTGCTCGTCTCGAAACAAAGAAACAACAATTGGTCAAAAAC
TATGAAACTTTAGTTTCAAAAACTACCATACCTTCTTATGATAAAGTTCCACAAAATATC
AGAGATGATAATACTCAAAAAATTAAAGCTTTAGATGAAGAAATTAATATTACAAACAAA
ACCATTGAAAGTTTTACAAAATTAAATATTTAAAATTATAAATAATAATTAATAATAATA
ATAATAAAGTTTTAATTACTAAATTTAGTAATAAATAATAAAATAAAATAAAATAAAATA
AAATAATTTAAAAAAA
Length of connected seq. 1266
Full length Seq ID -
Full length Seq. -
Length of full length seq. -