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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AJ15
Library FC
(Link to library)
Clone ID FC-AJ15
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16520-1
Original site URL
Representative seq. ID FC-AJ15P
(Link to Original site)
Representative DNA sequence 
>FC-AJ15 (FC-AJ15Q) /CSM/FC/FC-AJ/FC-AJ15Q.Seq.d/
ATTTTTTTTTCATATTTCTTTTATATATTTATAATTTTTTTTTTTTTCATCAACATATAA
ATTTTAAAATAAAAAGAAAAATAAAGGAAAAAAAAAGATTAAATAAATAAATGGGTAATA
ATCAATCACAAGGCCAAGGTGATAAAGGTGAAAAAAAAGATCAGCCAAAGTATCAACCAC
CACCACCACCAACACAATTTGGTAAAAAGAAAAAGAGAAGAGGAGCAGAGACATCAACTA
AATTACCAGTTATTACACCACATTCAAAATGTAAATTAAAACAATTGAAACTTGAACGTA
TTAAAGATTATTTATTAATGGAACAAGAATTTTTACAAAACTATGATCTCAATCAACCAA
AGGTTGATGAAAATAGCAAAGAACAAGCCGATGAGAAAATCATTGAGGAACTCCGTGGTG
ATCCATTGACAGTTGGTAATTTGGAGGAGATTATCGATGNTAATCACGCCATCGTGTCAT
CAACCGTAGACCAGAGCATTATGTCCGTATCATGTCTTTGTAGXXXXXXXXXXGAACTCT
TGAATCAATTGGATGGTTTCGATGCTAGTACCGATGTAAAAGTTATCATGGCTACAAATC
GTATTGAAACTTTAGATCCTGCTCTCATTCGTCCAGGTCGTATCGATCGTAAAATTGAAT
TCCCTCTTCCAGATATTAAGACCAAGAGAAAGATCTTTGAAATTCATACTGCTAAAATGA
ATCTCTCTGAAGATGTTAACCTTGAAGAGTTTGTTATGTCTAAAGATGATTTATCCGGTG
CTGATATCAAAGCCATCTGTACTGAATCTGGTCTTTTAGCACTCAGAGAACGTAGAATGA
GAGTAACTCATACTGATTTTAAAAAAGCAAAAGAAAAAGTTTTATACAGAAAAACAGCTG
GTGCTCCAGAAGGTTTATATATGTAAAAAAAAAAAAATCAAAATCAAAAAAA
sequence update 1996.12.25
Translated Amino Acid sequence 
fffifllyiynffffhqhinfkikrkikekkrlnk*MGNNQSQGQGDKGEKKDQPKYQPP
PPPTQFGKKKKRRGAETSTKLPVITPHSKCKLKQLKLERIKDYLLMEQEFLQNYDLNQPK
VDENSKEQADEKIIEELRGDPLTVGNLEEIIDXNHAIVSSTVDQSIMSVSCLC---

---ELLNQLDGFDASTDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDIKTKRKIFEI
HTAKMNLSEDVNLEEFVMSKDDLSGADIKAICTESGLLALRERRMRVTHTDFKKAKEKVL
YRKTAGAPEGLYM*kkknqnqk
Translated Amino Acid sequence (All Frames) 
Frame A:
iffsyffyifiiffffini*ilk*kek*rkkkd*inkwviinhkakvikvkkkisqsinh
hhhqhnlvkrkreeeqrhqlnyqllhhiqnvn*nn*nlnvlkiiy*wnknfyktmisinq
rlmkiaknkpmrkslrnsvvih*qlviwrrlsmxitpschqp*tralcpyhvfv---

---ELLNQLDGFDASTDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDIKTKRKIFEI
HTAKMNLSEDVNLEEFVMSKDDLSGADIKAICTESGLLALRERRMRVTHTDFKKAKEKVL
YRKTAGAPEGLYM*kkknqnqk

Frame B:
fffhisfiyl*ffffsstykf*nkkknkgkkkik*ing**sitrpr**r*kkrsakvstt
tttntiw*kekekrsrdin*itsyyttfkm*iktiet*ty*rlfingtriftkl*sqstk
g**k*qrtsr*enh*gtpw*sidsw*fggdyrx*srhrvinrrpehyvrimsl*---

---ns*inwmvsmlvpm*klswlqivlkl*illsfvqvvsivklnslfqilrprerslkf
illk*islkmltlksllclkmiypvliskpsvlnlvf*hsenve*e*lililkkqkkkfy
tekqlvlqkvyickkkkikikk

Frame C:
fffifllyiynffffhqhinfkikrkikekkrlnk*MGNNQSQGQGDKGEKKDQPKYQPP
PPPTQFGKKKKRRGAETSTKLPVITPHSKCKLKQLKLERIKDYLLMEQEFLQNYDLNQPK
VDENSKEQADEKIIEELRGDPLTVGNLEEIIDXNHAIVSSTVDQSIMSVSCLC---

---tlesigwfrc*yrcksyhgyksy*nfrscshssrsyrs*n*ipssry*dqekdl*ns
yc*nesl*rc*p*rvcyv*r*firc*yqshly*iwsfstqrt*nesnsy*f*kskrksfi
qknswcsrrfiyvkkkkskskk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AJ15 (FC-AJ15Q) /CSM/FC/FC-AJ/FC-AJ15Q.Seq.d/                     1402   0.0
VFB722 (VFB722Q) /CSM/VF/VFB7-A/VFB722Q.Seq.d/                        690   0.0
SLB640 (SLB640Q) /CSM/SL/SLB6-B/SLB640Q.Seq.d/                        640   0.0
AFN319 (AFN319Q) /CSM/AF/AFN3-A/AFN319Q.Seq.d/                        640   0.0
SFH857 (SFH857Q) /CSM/SF/SFH8-C/SFH857Q.Seq.d/                        626   e-178
AFE732 (AFE732Q) /CSM/AF/AFE7-B/AFE732Q.Seq.d/                        547   e-154
AFA160 (AFA160Q) /CSM/AF/AFA1-C/AFA160Q.Seq.d/                        470   e-131
SFE651 (SFE651Q) /CSM/SF/SFE6-C/SFE651Q.Seq.d/                        353   3e-96
AFC208 (AFC208Q) /CSM/AF/AFC2-A/AFC208Q.Seq.d/                        339   5e-92
AFH216 (AFH216Q) /CSM/AF/AFH2-A/AFH216Q.Seq.d/                        333   3e-90
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BQ622353|BQ622353.1 fch1c.pk002.o11 Conidiobolus cornatus ARSEF 512 Conidiobolus coronatus cDNA, mRNA sequence.    76  1e-23  3
BI741860|BI741860.1 kt81h06.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:PRS4_CAEEL O16368 PROBABLE 26S PROTEASE REGULATORY SUBUNIT 4. [1] ;, mRNA sequence.   113  2e-22  2
BQ477137|BQ477137.1 meladema3d09.g Meladema coriacea cDNA Meladema coriacea cDNA clone meladema3d09 3', mRNA sequence.    78  7e-20  3
BF046998|BF046998.1 EST1095 Manduca sexta male antennae Uni-ZAP XR library Manduca sexta cDNA clone pMsmaI6E10 5' similar to 26S protease regulatory subunit 4 of D. melanogaster, mRNA sequence.    86  3e-18  3
BM357203|BM357203.2 13II-H3 Triphysaria versicolor root-tip, early DMBQ-induced transcript cDNA library Triphysaria versicolor cDNA, mRNA sequence.    62  8e-15  2
BG837329|BG837329.1 Zm10_08e07_A Zm10_AAFC_ECORC_Fusarium_graminearum_corn_silk Zea mays cDNA clone Zm10_08e07, mRNA sequence.    54  3e-14  3
BP119878|BP119878.1 Bombyx mori cDNA, clone:ceN-1456.             64  4e-14  2
BP120902|BP120902.1 Bombyx mori cDNA, clone:ceN-3859.             64  5e-14  2
BM959240|BM959240.1 PLATE_12_C11_05.AB1 GS Lambda-Triplex, 10 day germinating spore library Glomus intraradices cDNA, mRNA sequence.    48  4e-13  3
BM959492|BM959492.1 PLATE_9_C08_06.AB1 GS Lambda-Triplex, 10 day germinating spore library Glomus intraradices cDNA, mRNA sequence.    48  7e-13  3
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT046462_1(BT046462|pid:none) Salmo salar clone ssal-eve-509-321...   233   7e-60
AF123391_1(AF123391|pid:none) Arabidopsis thaliana 26S proteasom...   222   1e-56
AB161192_1(AB161192|pid:none) Arabidopsis thaliana HLR mRNA for ...   222   1e-56
AY087584_1(AY087584|pid:none) Arabidopsis thaliana clone 36815 m...   221   2e-56
AC006081_7(AC006081|pid:none) Arabidopsis thaliana chromosome 2 ...   221   2e-56
FB781850_1(FB781850|pid:none) Sequence 1123 from Patent WO200803...   221   3e-56
BT054998_1(BT054998|pid:none) Zea mays full-length cDNA clone ZM...   221   3e-56
BT062241_1(BT062241|pid:none) Zea mays full-length cDNA clone ZM...   221   3e-56
AB037154_1(AB037154|pid:none) Oryza sativa Japonica Group OsRPT2...   220   5e-56
D17789_1(D17789|pid:none) Oryza sativa Japonica Group mRNA for h...   220   5e-56
protein update 2009. 4.13
PSORT 

 psg: 0.75  gvh: 0.28  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.11  mip: 0.00
 nuc: 0.22  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: Golgi
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for FC-AJ15 is nuc
5' end seq. ID FC-AJ15F
5' end seq. 
>FC-AJ15F.Seq
ATTTTTTTTTCATATTTCTTTTATATATTTATAATTTTTTTTTTTTTCATCAACATATAA
ATTTTAAAATAAAAAGAAAAATAAAGGAAAAAAAAAGATTAAATAAATAAATGGGTAATA
ATCAATCACAAGGCCAAGGTGATAAAGGTGAAAAAAAAGATCAGCCAAAGTATCAACCAC
CACCACCACCAACACAATTTGGTAAAAAGAAAAAGAGAAGAGGAGCAGAGACATCAACTA
AATTACCAGTTATTACACCACATTCAAAATGTAAATTAAAACAATTGAAACTTGAACGTA
TTAAAGATTATTTATTAATGGAACAAGAATTTTTACAAAACTATGATCTCAATCAACCAA
AGGTTGATGAAAATAGCAAAGAACAAGCCGATGAGAAAATCATTGAGGAACTCCGTGGTG
ATCCATTGACAGTTGGTAATTTGGAGGAGATTATCGATGNTAATCACGCCATCGTGTCAT
CAACCGTAGACCAGAGCATTATGTCCGTATCATGTCTTTGTAG----------
Length of 5' end seq. 523
3' end seq. ID FC-AJ15Z
3' end seq. 
>FC-AJ15Z.Seq
----------GAACTCTTGAATCAATTGGATGGTTTCGATGCTAGTACCGATGTAAAAGT
TATCATGGCTACAAATCGTATTGAAACTTTAGATCCTGCTCTCATTCGTCCAGGTCGTAT
CGATCGTAAAATTGAATTCCCTCTTCCAGATATTAAGACCAAGAGAAAGATCTTTGAAAT
TCATACTGCTAAAATGAATCTCTCTGAAGATGTTAACCTTGAAGAGTTTGTTATGTCTAA
AGATGATTTATCCGGTGCTGATATCAAAGCCATCTGTACTGAATCTGGTCTTTTAGCACT
CAGAGAACGTAGAATGAGAGTAACTCATACTGATTTTAAAAAAGCAAAAGAAAAAGTTTT
ATACAGAAAAACAGCTGGTGCTCCAGAAGGTTTATATATGTAAAAAAAAAAAAATCAAAA
TCAAAAAAA
Length of 3' end seq. 419
Connected seq. ID FC-AJ15P
Connected seq. 
>FC-AJ15P.Seq
ATTTTTTTTTCATATTTCTTTTATATATTTATAATTTTTTTTTTTTTCATCAACATATAA
ATTTTAAAATAAAAAGAAAAATAAAGGAAAAAAAAAGATTAAATAAATAAATGGGTAATA
ATCAATCACAAGGCCAAGGTGATAAAGGTGAAAAAAAAGATCAGCCAAAGTATCAACCAC
CACCACCACCAACACAATTTGGTAAAAAGAAAAAGAGAAGAGGAGCAGAGACATCAACTA
AATTACCAGTTATTACACCACATTCAAAATGTAAATTAAAACAATTGAAACTTGAACGTA
TTAAAGATTATTTATTAATGGAACAAGAATTTTTACAAAACTATGATCTCAATCAACCAA
AGGTTGATGAAAATAGCAAAGAACAAGCCGATGAGAAAATCATTGAGGAACTCCGTGGTG
ATCCATTGACAGTTGGTAATTTGGAGGAGATTATCGATGNTAATCACGCCATCGTGTCAT
CAACCGTAGACCAGAGCATTATGTCCGTATCATGTCTTTGTAG----------GAACTCT
TGAATCAATTGGATGGTTTCGATGCTAGTACCGATGTAAAAGTTATCATGGCTACAAATC
GTATTGAAACTTTAGATCCTGCTCTCATTCGTCCAGGTCGTATCGATCGTAAAATTGAAT
TCCCTCTTCCAGATATTAAGACCAAGAGAAAGATCTTTGAAATTCATACTGCTAAAATGA
ATCTCTCTGAAGATGTTAACCTTGAAGAGTTTGTTATGTCTAAAGATGATTTATCCGGTG
CTGATATCAAAGCCATCTGTACTGAATCTGGTCTTTTAGCACTCAGAGAACGTAGAATGA
GAGTAACTCATACTGATTTTAAAAAAGCAAAAGAAAAAGTTTTATACAGAAAAACAGCTG
GTGCTCCAGAAGGTTTATATATGTAAAAAAAAAAAAATCAAAATCAAAAAAA
Length of connected seq. 942
Full length Seq ID -
Full length Seq. -
Length of full length seq. -