FC-AK01
Library FC
(Link to library)
Clone ID FC-AK01
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15038-1
Original site URL
Representative seq. ID FC-AK01E
(Link to Original site)
Representative DNA sequence
>FC-AK01 (FC-AK01Q) /CSM/FC/FC-AK/FC-AK01Q.Seq.d/
CACACATACATATACAAAATGGGTTTCGTCAAAGTCGTTAAAACTAAAGCTTACTACAGC
AGATATCAAGTCCAATTCCGTAGAAGACGTGAAGGTAAAACTGATTATCAACAAAGACAC
AGATTAATCACTCAAGATAAGAACAAGTACAACTCACCAAAATACAGACTTGTTGCTCGT
ATCACCAACACTGATGTTATTGCTCAAGTTGTCTACTCTAAGATTGTCGGTGATTTCGTC
TTATGTGCAGCTTACGCTCACGAATTACCAAGATTCGGTGTCAAAGTTGGTCTCACCAAC
TCATGCTTCATGTTATGCTACCGGTCTCTTATTAGCTCGTAGATTATTAGCCAAATTAAA
ATTAGCCGATCTCTACAAAGGTGCTGAAAAAGTTGACGGTAAAGTTTTCCTCGTCAAACC
AGTCGACGACAAACCAAGACCATTCAAAGCTAATCTCGATGTTGGTCTCGCTCGTACCTC
AACTGGTGCTAAAGTCTTTGCTGTCCTCAAAGGTGCTGTCGACGGTGGTATCTACGTCCC
ACACGGTGAAACCCGTTTCGCTGGTTACAACGCTGAAAGCAAGAAATTAAACGCTGAAAC
TCTCCGTGGTTACATCTTTGGTAAACACGTTGCCTCTTACATGACCTTATTACAAACTGA
AGACGAAGATGCCTACAAAAAGATCTTCTCTCAATACATCAAAAACGGTGTTGCTCCAAA
AGATATCGAAACCATCTATGCCAACGCTCACAAAGCCATCAGAGCCAACCCAGACCCAGC
TGCCAAATCAACCAAATCATACAAAGATATCAAATCCAAGAACCTCAGCAAGAGAACCCT
CAAACAAAAGAAAGCTCGTGTTGCTTCCATCAAAGCTTCATACAAAGCTCGTCTTTAAAC
ATCTTGTTCTTTTTCAAGCTTTTTTAATTTAAACAATAAAAAATTTTAAATTGAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1997. 1.14
Translated Amino Acid sequence
thtytkwvsskslklklttadiksnsvedvkvkliinkdtd*SLKIRTSTTHQNTDLLLV
SPTLMLLLKLSTLRLSVISSYVQLTLTNYQDSVSKLVSPTHASCYATGLLLARRLLAKLK
LADLYKGAEKVDGKVFLVKPVDDKPRPFKANLDVGLARTSTGAKVFAVLKGAVDGGIYVP
HGETRFAGYNAESKKLNAETLRGYIFGKHVASYMTLLQTEDEDAYKKIFSQYIKNGVAPK
DIETIYANAHKAIRANPDPAAKSTKSYKDIKSKNLSKRTLKQKKARVASIKASYKARL*t
scsfssffnlnnkkf*iekkkkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
htyiykmgfvkvvktkayysryqvqfrrrregktdyqqrhrlitqdknkynspkyrlvar
itntdviaqvvyskivgdfvlcaayahelprfgvkvgltnscfmlcyrsliss*iisqik
isrslqrc*ks*r*sfprqtsrrqtktiqs*srcwsrsylnwc*slccpqrccrrwylrp
tr*npfrwlqr*kqeikr*nspwlhlw*trcllhdlitn*rrrclqkdllsihqkrccsk
ryrnhlcqrsqshqsqprpscqinqiiqryqiqepqqenpqtkessccfhqsfiqsssln
ilfffklf*fkq*kiln*kkkkkkkkkkkkkk


Frame B:
thtytkwvsskslklklttadiksnsvedvkvkliinkdtd*SLKIRTSTTHQNTDLLLV
SPTLMLLLKLSTLRLSVISSYVQLTLTNYQDSVSKLVSPTHASCYATGLLLARRLLAKLK
LADLYKGAEKVDGKVFLVKPVDDKPRPFKANLDVGLARTSTGAKVFAVLKGAVDGGIYVP
HGETRFAGYNAESKKLNAETLRGYIFGKHVASYMTLLQTEDEDAYKKIFSQYIKNGVAPK
DIETIYANAHKAIRANPDPAAKSTKSYKDIKSKNLSKRTLKQKKARVASIKASYKARL*t
scsfssffnlnnkkf*iekkkkkkkkkkkkk


Frame C:
hihiqngfrqsr*n*sllqqisspip*kt*r*n*lstktqinhsr*eqvqltkiqtccsy
hqh*cycsscll*dcr*frlmcslrsritkircqswshqlmlhvmlpvsy*lvdy*pn*n
*pistkvlkkltvkfsssnqsttnqdhsklismlvslvpqlvlksllsskvlstvvstsh
tvkpvslvttlkarn*tlklsvvtslvntlplt*pyyklktkmptkrsslntsktvllqk
iskpsmptltkpseptqtqlpnqpnhtkisnprtsarepsnkrklvllpsklhtklvfkh
lvlfqafli*tiknfklkkkkkkkkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AK01 (FC-AK01Q) /CSM/FC/FC-AK/FC-AK01Q.Seq.d/ 1889 0.0
FC-186 (FC-186Q) /CSM/CG/CG-FC/FC-186Q.Seq.d/ 1881 0.0
VFG859 (VFG859Q) /CSM/VF/VFG8-C/VFG859Q.Seq.d/ 1859 0.0
VSD336 (VSD336Q) /CSM/VS/VSD3-B/VSD336Q.Seq.d/ 1852 0.0
VFN413 (VFN413Q) /CSM/VF/VFN4-A/VFN413Q.Seq.d/ 1828 0.0
AHK819 (AHK819Q) /CSM/AH/AHK8-A/AHK819Q.Seq.d/ 1818 0.0
SLA690 (SLA690Q) /CSM/SL/SLA6-D/SLA690Q.Seq.d/ 1808 0.0
FC-BA15 (FC-BA15Q) /CSM/FC/FC-BA/FC-BA15Q.Seq.d/ 1739 0.0
VFI286 (VFI286Q) /CSM/VF/VFI2-D/VFI286Q.Seq.d/ 1356 0.0
SLB250 (SLB250Q) /CSM/SL/SLB2-C/SLB250Q.Seq.d/ 1334 0.0

own update 2002.11.29
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AX489176|AX489176.1 Sequence 6476 from Patent WO02053728. 48 9e-16 3
BI743828|BI743828.1 kx53e03.y1 Parastrongyloides trichosuri PA pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:RL5_CAEEL P49405 PROBABLE 60S RIBOSOMAL PROTEIN L5. [1] ;, mRNA sequence. 68 4e-11 3
BQ622829|BQ622829.1 CC_Contig125 Conidiobolus cornatus ARSEF 512 Conidiobolus coronatus cDNA, mRNA sequence. 72 2e-08 1
L78668|L78668.1 Styela clava ribosomal protein L5 gene, complete cds. 46 2e-08 3
AQ842704|AQ842704.1 CpG1210B CpIOWAgDNA1 Cryptosporidium parvum genomic similar to 60S ribosomal protein L5, genomic survey sequence. 50 1e-06 2
AJ562777|AJ562777.1 Cryptosporidium parvum GSS, PAC clone pica_0011_c10, T7 end sequence. 50 1e-06 2
AW152816|AW152816.1 JALsL3C147SAC Litomosoides sigmodontis (parasitic nematode) infective L3 Litomosoides sigmodontis cDNA clone JALsL3C147 5', mRNA sequence. 44 1e-06 2
AI618307|AI618307.1 zehs0068.seq.F Zebrafish Embryonic Heart cDNA Library Danio rerio cDNA 5', mRNA sequence. 48 1e-06 2
BQ099872|BQ099872.1 ph69f01.y1 Ostertagia ostertagi L4 SL1 TOPO v1 Ostertagia ostertagi cDNA similar to SW:RL5_CAEEL P49405 PROBABLE 60S RIBOSOMAL PROTEIN L5. [1] ;, mRNA sequence. 38 2e-06 4
BQ100143|BQ100143.1 ph73a09.y1 Ostertagia ostertagi L4 SL1 TOPO v1 Ostertagia ostertagi cDNA similar to SW:RL5_CAEEL P49405 PROBABLE 60S RIBOSOMAL PROTEIN L5. [1] ;, mRNA sequence. 38 2e-06 4
dna update 2003.12.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54XX3) RecName: Full=60S ribosomal protein L5; 356 6e-97
BC041227_1(BC041227|pid:none) Xenopus laevis 60S ribosomal prote... 172 5e-81
(P15125) RecName: Full=60S ribosomal protein L5-A; &A33823(A338... 169 2e-80
BT046397_1(BT046397|pid:none) Salmo salar clone ssal-evf-506-137... 172 1e-79
BT075631_1(BT075631|pid:none) Osmerus mordax clone omor-eva-516-... 175 1e-79
BT073256_1(BT073256|pid:none) Oncorhynchus mykiss clone omyk-evn... 172 6e-79
AF401557_1(AF401557|pid:none) Ictalurus punctatus ribosomal prot... 169 6e-79
AB374938_1(AB374938|pid:none) Solea senegalensis RPL5 mRNA for r... 169 5e-78
BT058604_1(BT058604|pid:none) Salmo salar clone Contig2421 60S r... 172 8e-78
BT043767_1(BT043767|pid:none) Salmo salar clone HM6_1185 Ribosom... 172 1e-77
protein update 2009. 7. 2
PSORT

psg: 0.69 gvh: 0.61 alm: 0.31 top: 0.50 tms: 0.07 mit: 0.43 mip: 0.12
nuc: 0.00 erl: 0.00 erm: 0.80 pox: 0.30 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

40.0 %: mitochondrial
20.0 %: nuclear
16.0 %: Golgi
12.0 %: cytoplasmic
8.0 %: endoplasmic reticulum
4.0 %: vacuolar

>> prediction for FC-AK01 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AK01E
Full length Seq.
>FC-AK01E.Seq
CACACATACATATACAAAATGGGTTTCGTCAAAGTCGTTAAAACTAAAGCTTACTACAGC
AGATATCAAGTCCAATTCCGTAGAAGACGTGAAGGTAAAACTGATTATCAACAAAGACAC
AGATTAATCACTCAAGATAAGAACAAGTACAACTCACCAAAATACAGACTTGTTGCTCGT
ATCACCAACACTGATGTTATTGCTCAAGTTGTCTACTCTAAGATTGTCGGTGATTTCGTC
TTATGTGCAGCTTACGCTCACGAATTACCAAGATTCGGTGTCAAAGTTGGTCTCACCAAC
TCATGCTTCATGTTATGCTACCGGTCTCTTATTAGCTCGTAGATTATTAGCCAAATTAAA
ATTAGCCGATCTCTACAAAGGTGCTGAAAAAGTTGACGGTAAAGTTTTCCTCGTCAAACC
AGTCGACGACAAACCAAGACCATTCAAAGCTAATCTCGATGTTGGTCTCGCTCGTACCTC
AACTGGTGCTAAAGTCTTTGCTGTCCTCAAAGGTGCTGTCGACGGTGGTATCTACGTCCC
ACACGGTGAAACCCGTTTCGCTGGTTACAACGCTGAAAGCAAGAAATTAAACGCTGAAAC
TCTCCGTGGTTACATCTTTGGTAAACACGTTGCCTCTTACATGACCTTATTACAAACTGA
AGACGAAGATGCCTACAAAAAGATCTTCTCTCAATACATCAAAAACGGTGTTGCTCCAAA
AGATATCGAAACCATCTATGCCAACGCTCACAAAGCCATCAGAGCCAACCCAGACCCAGC
TGCCAAATCAACCAAATCATACAAAGATATCAAATCCAAGAACCTCAGCAAGAGAACCCT
CAAACAAAAGAAAGCTCGTGTTGCTTCCATCAAAGCTTCATACAAAGCTCGTCTTTAAAC
ATCTTGTTCTTTTTCAAGCTTTTTTAATTTAAACAATAAAAAATTTTAAATTGAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 996