>FC-AY04 (FC-AY04Q) /CSM/FC/FC-AY/FC-AY04Q.Seq.d/
XXXXXXXXXXGATCACTGGTGGAAATGATACTGAAGGTTTCCCAATGATGCAAGGTGTTG
GTGCCCCAACTAGAGTTCGTTTATTATTAGATGGTCGTTCAGGTTGTTTCAAACCAAGCC
GTGATGGTGAAAGAAAGAGAAAATCAGTTCGTGGTTGTATCGTTGCTGAAGATATCGCCT
CTTTACAATTAATCATTGTCAAGAAAGGTGATGCTGAAATTCCAGGCCTCACTGATGTCT
CATTCCCAGCCTCAAAAGGTCCAAAGAGAGCCTCAAACATTAGAAAACTCTTCAAATTAT
CAAAAGACGAAGATGTCCGTTCTTTCGTCATCCGTCGTGAATTACCAGCCACCGACAAAA
GAAAAGCTAAATCAAAAGCACCAAAGATCCAACGTTTAGTTACCCCAACCACCGTTGCCC
GTAGAAAGGCTCTCCGTGCTAAAAAAGCTGCTCGTCACACTAAAGCCAGCAATGAAGCCG
CCGAATACGCTAAACTCGTTGCCCAAAGACAACAAGCTAAAGCCAAGAGATCCGTCAAAG
TTTCAAGCAAAAAAGTTGTTGCCAAGTAAATAAATAATACTTTTTTCCCTATA

---ITGGNDTEGFPMMQGVGAPTRVRLLLDGRSGCFKPSRDGERKRKSVRGCIVAEDIAS
LQLIIVKKGDAEIPGLTDVSFPASKGPKRASNIRKLFKLSKDEDVRSFVIRRELPATDKR
KAKSKAPKIQRLVTPTTVARRKALRAKKAARHTKASNEAAEYAKLVAQRQQAKAKRSVKV
SSKKVVAK*inntffpi

Frame A:
---ITGGNDTEGFPMMQGVGAPTRVRLLLDGRSGCFKPSRDGERKRKSVRGCIVAEDIAS
LQLIIVKKGDAEIPGLTDVSFPASKGPKRASNIRKLFKLSKDEDVRSFVIRRELPATDKR
KAKSKAPKIQRLVTPTTVARRKALRAKKAARHTKASNEAAEYAKLVAQRQQAKAKRSVKV
SSKKVVAK*inntffpi


Frame B:
---slvemilkvsq*ckvlvpqlefvyy*mvvqvvsnqavmvkerenqfvvvsllkispl
yn*slsrkvmlkfqaslmshsqpqkvqrepqtlenssnyqktkmsvlsssvvnyqpptke
klnqkhqrsnv*lpqpplpverlsvlkkllvtlkpamkppntlnslpkdnklkprdpskf
qakkllpsk*iilfsl


Frame C:
---hwwk*y*rfpndarcwcpn*ssfiirwsfrlfqtkp*w*kkekisswlyrc*ryrlf
tinhcqer*c*nsrph*clipslkrskeslkh*ktlqiikrrrcpffrhps*itshrqkk
s*ikstkdptfsypnhrcp*kgspc*kscssh*sqq*srrir*trcpktts*sqeirqsf
kqksccqvnk*yffpy

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLA276 (SLA276Q) /CSM/SL/SLA2-D/SLA276Q.Seq.d/                       1156   0.0
FC-AY04 (FC-AY04Q) /CSM/FC/FC-AY/FC-AY04Q.Seq.d/                     1156   0.0
FC-AJ17 (FC-AJ17Q) /CSM/FC/FC-AJ/FC-AJ17Q.Seq.d/                     1156   0.0
FC-036 (FC-036Q) /CSM/CG/CG-FC/FC-036Q.Seq.d/                        1156   0.0
SLE610 (SLE610Q) /CSM/SL/SLE6-A/SLE610Q.Seq.d/                       1154   0.0
VSJ585 (VSJ585Q) /CSM/VS/VSJ5-D/VSJ585Q.Seq.d/                       1126   0.0
VSF608 (VSF608Q) /CSM/VS/VSF6-A/VSF608Q.Seq.d/                       1110   0.0
VSC395 (VSC395Q) /CSM/VS/VSC3-D/VSC395Q.Seq.d/                       1104   0.0
FC-AR19 (FC-AR19Q) /CSM/FC/FC-AR/FC-AR19Q.Seq.d/                     1088   0.0
FC-AP05 (FC-AP05Q) /CSM/FC/FC-AP/FC-AP05Q.Seq.d/                     1055   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

J01350|J01350.1 yeast (S.carlsbergensis) ribosomal protein S10 gene.    54  4e-14  4
X02746|X02746.1 Yeast gene for ribosomal protein S10-2.           54  6e-14  4
AX072910|AX072910.1 Sequence 21 from Patent WO0102550.            54  7e-14  4
AX073160|AX073160.1 Sequence 271 from Patent WO0102550.           54  8e-14  4
Z36050|Z36050.1 S.cerevisiae chromosome II reading frame ORF YBR181c.    54  2e-13  4
T37994|T37994.1 EST103316 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 5' end, mRNA sequence.    54  2e-13  3
T38015|T38015.1 EST103352 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 5' end, mRNA sequence.    54  6e-13  3
T37531|T37531.1 EST102679 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 5' end, mRNA sequence.    54  2e-12  3
U43281|U43281.1 Saccharomyces cerevisiae chromosome XVI cosmid 8059/8047.    54  5e-10  4
CA753827|AF402814_1 (AF402814) 40S ribosomal protein S6 [Ictalurus punctatus], mRNA sequence.    58  1e-09  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UU3) RecName: Full=40S ribosomal protein S6;                      289   3e-77
(Q9BMX5) RecName: Full=40S ribosomal protein S6;  &AF294917_1(AF...   188   1e-46
(Q2PQM1) RecName: Full=40S ribosomal protein S6;  &DQ307202_1(DQ...   181   1e-44
AM048933_1(AM048933|pid:none) Carabus granulatus partial mRNA fo...   180   2e-44
AY752838_1(AY752838|pid:none) Culicoides sonorensis clone CsRPS6...   179   4e-44
AE014298_1126(AE014298|pid:none) Drosophila melanogaster chromos...   179   6e-44
(Q6BXH8) RecName: Full=40S ribosomal protein S6;  &CR382134_126(...   178   1e-43
(Q9U761) RecName: Full=40S ribosomal protein S6;                      177   2e-43
AF154067_1(AF154067|pid:none) Aedes aegypti ribosomal protein S6...   177   2e-43
AJ438987_1(AJ438987|pid:none) Paracentrotus lividus mRNA for S6 ...   176   5e-43

 psg: 0.75  gvh: 0.37  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.20  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 92.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for FC-AY04 is cyt

>FC-AY04Z.Seq
----------GATCACTGGTGGAAATGATACTGAAGGTTTCCCAATGATGCAAGGTGTTG
GTGCCCCAACTAGAGTTCGTTTATTATTAGATGGTCGTTCAGGTTGTTTCAAACCAAGCC
GTGATGGTGAAAGAAAGAGAAAATCAGTTCGTGGTTGTATCGTTGCTGAAGATATCGCCT
CTTTACAATTAATCATTGTCAAGAAAGGTGATGCTGAAATTCCAGGCCTCACTGATGTCT
CATTCCCAGCCTCAAAAGGTCCAAAGAGAGCCTCAAACATTAGAAAACTCTTCAAATTAT
CAAAAGACGAAGATGTCCGTTCTTTCGTCATCCGTCGTGAATTACCAGCCACCGACAAAA
GAAAAGCTAAATCAAAAGCACCAAAGATCCAACGTTTAGTTACCCCAACCACCGTTGCCC
GTAGAAAGGCTCTCCGTGCTAAAAAAGCTGCTCGTCACACTAAAGCCAGCAATGAAGCCG
CCGAATACGCTAAACTCGTTGCCCAAAGACAACAAGCTAAAGCCAAGAGATCCGTCAAAG
TTTCAAGCAAAAAAGTTGTTGCCAAGTAAATAAATAATACTTTTTTCCCTATA