NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-BC16
Library FC
(Link to library)
Clone ID FC-BC16
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15105-1
Original site URL
Representative seq. ID FC-BC16Z
(Link to Original site)
Representative DNA sequence 
>FC-BC16 (FC-BC16Q) /CSM/FC/FC-BC/FC-BC16Q.Seq.d/
XXXXXXXXXXTGTCCAGATATCTCCTTACAAGATTACATCTGCGTTAAAAAGAATGTCTT
CACTCCACATTCAGCAGGTAGATACAACAAAGTTAGATTCAGAAAGGCCCAATGCCCAAT
TGTTGAACGTCTTGCCAACAGTATGATGATGTTCGGTAGAAATGCTGGTAAAAAAGTCAT
GGCTGTCCGTATCATCGAACAAGCCTTCGAAATCATCTACCTCTTAACCGATAAGAACCC
ACTCCAAGTTTTAGTCGAAGCTGTCATGAACTCTGGTCCACGTGAAGATTCAACTCGTAT
TGGTTCAGCTGGTACTGTCAGACGTCAAGCTGTCGATGTTTCCCCAATGAGACGTGTCAA
CCACGCTGTTTACCTCTTAACCCAAGGTACTCGTGCTGCTGCTTTCAGAAACATCAGAAC
TGTTGCTGAATGTTTAGCTGATGAATTAATCAATGCCTCAAAAGGTTCACCAAATTCCTA
CTCAATCAAACAAAAGGATGCTTTAGAACGTACCGCCAAATCCCATCGTTAAGCGATTCG
AATATATTATATATTATTGTTTCTTTTTAAAACCCCACAAGAAATAAACTATATAAAAAA
AAAGAAAATATAAATTAAAGTAAAAAAAAA
sequence update 1997. 7. 2
Translated Amino Acid sequence 
---PDISLQDYICVKKNVFTPHSAGRYNKVRFRKAQCPIVERLANSMMMFGRNAGKKVMA
VRIIEQAFEIIYLLTDKNPLQVLVEAVMNSGPREDSTRIGSAGTVRRQAVDVSPMRRVNH
AVYLLTQGTRAAAFRNIRTVAECLADELINASKGSPNSYSIKQKDALERTAKSHR*airi
yyillflfktpqeinyikkkki*ikvkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---vqispykitsalkrmsslhiqqvdttkldserpnaqllnvlptv**csvemlvkksw
lsvssnkpskssts*pirthskf*skls*tlvhvkiqlvlvqlvlsdvklsmfpq*dvst
tlfts*pkvlvlllsetselllnv*lmn*smpqkvhqiptqsnkrml*nvppnpivkrfe
yiiyycfflkphkk*ti*kkrkyklk*kk


Frame B:
---srylltrlhlr*keclhstfsr*iqqs*iqkgpmpnc*tscqqyddvr*kcw*kshg
cpyhrtslrnhlplnr*eptpsfsrschelwst*rfnsywfswycqtsscrcfpnetcqp
rclplnpryscccfqkhqncc*mfs**inqclkrftkfllnqtkgcfrtyrqipslsdsn
ilyiivsf*nptrnklykkkenin*skkk


Frame C:
---PDISLQDYICVKKNVFTPHSAGRYNKVRFRKAQCPIVERLANSMMMFGRNAGKKVMA
VRIIEQAFEIIYLLTDKNPLQVLVEAVMNSGPREDSTRIGSAGTVRRQAVDVSPMRRVNH
AVYLLTQGTRAAAFRNIRTVAECLADELINASKGSPNSYSIKQKDALERTAKSHR*airi
yyillflfktpqeinyikkkki*ikvkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ269 (VSJ269Q) /CSM/VS/VSJ2-C/VSJ269Q.Seq.d/                       1158   0.0
VSH720 (VSH720Q) /CSM/VS/VSH7-A/VSH720Q.Seq.d/                       1158   0.0
VSE854 (VSE854Q) /CSM/VS/VSE8-C/VSE854Q.Seq.d/                       1158   0.0
SSG639 (SSG639Q) /CSM/SS/SSG6-B/SSG639Q.Seq.d/                       1158   0.0
FC-BS16 (FC-BS16Q) /CSM/FC/FC-BS/FC-BS16Q.Seq.d/                     1158   0.0
FC-BC16 (FC-BC16Q) /CSM/FC/FC-BC/FC-BC16Q.Seq.d/                     1158   0.0
FC-AD21 (FC-AD21Q) /CSM/FC/FC-AD/FC-AD21Q.Seq.d/                     1158   0.0
FC-AD07 (FC-AD07Q) /CSM/FC/FC-AD/FC-AD07Q.Seq.d/                     1158   0.0
VSI164 (VSI164Q) /CSM/VS/VSI1-C/VSI164Q.Seq.d/                       1156   0.0
VSK446 (VSK446Q) /CSM/VS/VSK4-B/VSK446Q.Seq.d/                       1152   0.0
own update 2004. 5.31
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AQ450188|AQ450188.1 500008H09.x1 CpIOWAM13mp18gDNA1 Cryptosporidium parvum genomic similar to 40S ribosomal protein S5, DNA sequence.   107  2e-27  3
CD450618|CD450618.1 USDA-FP_102581 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-35_F01 5', mRNA sequence.    72  3e-25  4
AX489078|AX489078.1 Sequence 6378 from Patent WO02053728.         72  8e-23  3
CD421166|CD421166.1 ku80d03.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:RS5_CAEEL P49041 PROBABLE 40S RIBOSOMAL PROTEIN S5. [1] ;, mRNA sequence.    64  6e-22  3
AA532240|AA532240.1 CpEST.520 uniZAPCpIOWAsporoLib3 Cryptosporidium parvum cDNA 5' similar to 40s ribosomal protein S5, mRNA sequence.   107  1e-21  2
BX538352|BX538352.1 Cryptosporidium parvum chromosome 6, complete sequence; segment 3/4.   107  2e-21  6
BG301820|BG301820.1 kt05h01.y1 Strongyloides ratti L3 adult SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RS5_CAEEL P49041 PROBABLE 40S RIBOSOMAL PROTEIN S5. [1] ;, mRNA sequence.    64  3e-21  3
BG301832|BG301832.1 kt06a05.y1 Strongyloides ratti L3 adult SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RS5_CAEEL P49041 PROBABLE 40S RIBOSOMAL PROTEIN S5. [1] ;, mRNA sequence.    64  3e-21  3
BG301645|BG301645.1 kt03g01.y1 Strongyloides ratti L1 SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RS5_CAEEL P49041 PROBABLE 40S RIBOSOMAL PROTEIN S5. [1] ;, mRNA sequence.    64  3e-21  3
BI450937|BI450937.1 kt79e06.y4 Strongyloides ratti L2 SL1 TOPO v2 Strongyloides ratti cDNA 5' similar to SW:RS5_CAEEL P49041 PROBABLE 40S RIBOSOMAL PROTEIN S5. [1] ;, mRNA sequence.    64  3e-21  3
dna update 2003. 7.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54MA6) RecName: Full=40S ribosomal protein S5;                      342   5e-93
AK002235_1(AK002235|pid:none) Mus musculus adult male kidney cDN...   255   6e-67
(P46782) RecName: Full=40S ribosomal protein S5;  &(Q5E988) RecN...   255   6e-67
AY891473_1(AY891473|pid:none) Synthetic construct Homo sapiens c...   255   6e-67
AY961565_1(AY961565|pid:none) Lysiphlebus testaceipes ribosomal ...   254   1e-66
AB291558_1(AB291558|pid:none) Solea senegalensis rpS5 mRNA for r...   254   2e-66
AY961522_1(AY961522|pid:none) Lysiphlebus testaceipes ribosomal ...   254   2e-66
AF402813_1(AF402813|pid:none) Ictalurus punctatus 40S ribosomal ...   254   2e-66
AJ783868_1(AJ783868|pid:none) Dascillus cervinus partial mRNA fo...   253   2e-66
AJ783869_1(AJ783869|pid:none) Timarcha balearica mRNA for S5e ri...   253   3e-66
protein update 2009. 4.14
PSORT 

 psg: 0.75  gvh: 0.31  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 88.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for FC-BC16 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-BC16Z
3' end seq. 
>FC-BC16Z.Seq
----------TGTCCAGATATCTCCTTACAAGATTACATCTGCGTTAAAAAGAATGTCTT
CACTCCACATTCAGCAGGTAGATACAACAAAGTTAGATTCAGAAAGGCCCAATGCCCAAT
TGTTGAACGTCTTGCCAACAGTATGATGATGTTCGGTAGAAATGCTGGTAAAAAAGTCAT
GGCTGTCCGTATCATCGAACAAGCCTTCGAAATCATCTACCTCTTAACCGATAAGAACCC
ACTCCAAGTTTTAGTCGAAGCTGTCATGAACTCTGGTCCACGTGAAGATTCAACTCGTAT
TGGTTCAGCTGGTACTGTCAGACGTCAAGCTGTCGATGTTTCCCCAATGAGACGTGTCAA
CCACGCTGTTTACCTCTTAACCCAAGGTACTCGTGCTGCTGCTTTCAGAAACATCAGAAC
TGTTGCTGAATGTTTAGCTGATGAATTAATCAATGCCTCAAAAGGTTCACCAAATTCCTA
CTCAATCAAACAAAAGGATGCTTTAGAACGTACCGCCAAATCCCATCGTTAAGCGATTCG
AATATATTATATATTATTGTTTCTTTTTAAAACCCCACAAGAAATAAACTATATAAAAAA
AAAGAAAATATAAATTAAAGTAAAAAAAAA
Length of 3' end seq. 620
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -