FC-BS10
Library FC
(Link to library)
Clone ID FC-BS10
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16283-1
Original site URL
Representative seq. ID FC-BS10Z
(Link to Original site)
Representative DNA sequence
>FC-BS10 (FC-BS10Q) /CSM/FC/FC-BS/FC-BS10Q.Seq.d/
XXXXXXXXXXCAAATATTATTGGTGTTGAACATTACAAAGTTGCCACCGATGTACAAAAG
ATCCTCCAAGAATATAAATCACTTCAAGATATTATTGCCATTTTAGGTATGGATGATTTA
TCTGAAGACCAAAAAGCAACTGTATTCCGTGCTCGTAAGATTCAACGTTTCTTATCACAA
CCATTCGAAGTTGCCCACGCCTTCACCAATATGGAAGGTAGATTCGTTAAACTCTCCGAC
TCTATCAAAGCCTTCAAAGGTATCCTCGAAGGTAAATACGATCATCTCCCAGAAGCTGCC
TTCTATATGGTTGGTGGTATCGAAGATTTCGAAATTAAAGCTGCTAAACTCTTAGAATCC
GCTGGTAAAGAAGAAAAGAAAACCACCACTACCTCCACCACTGGTCAAGTCAAAGAAGAA
ACTGTCAGAGAAAAAGTTACCAGACTCGTCGATGAAGCTTACAATGCTAAAGTCAAGAAA
TTAAAGGAATATGGTGCCTCAACTGCTCACCTTGAAGAATTACGTGCTCAATATGAAAAG
AACTTTGAATCTGAAATCAGTCAATTAGAAGTTTTATTAAAAAAATAAATTAACTTCCAA
AACTAAAAATAATTATATAATATTCAAATACTAAGAAAAAAAAAAATAAAAAAAAAAATA
AATGTGAAAAAACACTTATAATATAATAGTAATAAAAAAAATAATAAAAATATTCAAGTT
TTAAATGTAA
sequence update 1998. 5.12
Translated Amino Acid sequence
---NIIGVEHYKVATDVQKILQEYKSLQDIIAILGMDDLSEDQKATVFRARKIQRFLSQP
FEVAHAFTNMEGRFVKLSDSIKAFKGILEGKYDHLPEAAFYMVGGIEDFEIKAAKLLESA
GKEEKKTTTTSTTGQVKEETVREKVTRLVDEAYNAKVKKLKEYGASTAHLEELRAQYEKN
FESEISQLEVLLKK*infqn*k*lyniqilrkkkikkkinvkkhl*ynsnkknnkniqvl
nv


Translated Amino Acid sequence (All Frames)
Frame A:
---kyywc*tlqschrctkdppri*itsryychfryg*fi*rpksncipcs*dstflitt
irscprlhqygr*ir*tlrlyqslqryprr*irssprscllygwwyrrfrn*sc*tlrir
w*rrkenhhylhhwssqrrncqrksyqtrr*slqc*sqeikgiwclncsp*ritcsi*ke
l*i*nqsirsfikkin*lpklkiii*ysntkkkknkkknkcektlii****kk**kyssf
kc


Frame B:
---NIIGVEHYKVATDVQKILQEYKSLQDIIAILGMDDLSEDQKATVFRARKIQRFLSQP
FEVAHAFTNMEGRFVKLSDSIKAFKGILEGKYDHLPEAAFYMVGGIEDFEIKAAKLLESA
GKEEKKTTTTSTTGQVKEETVREKVTRLVDEAYNAKVKKLKEYGASTAHLEELRAQYEKN
FESEISQLEVLLKK*infqn*k*lyniqilrkkkikkkinvkkhl*ynsnkknnkniqvl
nv


Frame C:
---illvlnitklppmykrsskninhfkillpf*vwmiylktkkqlysvlvrfnvsyhnh
sklptpspiwkvdslnsptlskpskvsskvntiisqklpsiwlvvskisklkllns*npl
vkkkrkpplppplvkskkklsekklpdssmkltmlksrn*rnmvpqlltlknyvlnmkrt
lnlksvn*kfy*knkltsktknnyiifky*ekkk*kkk*m*kntyniivikkiikifkf*
m*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-BS10 (FC-BS10Q) /CSM/FC/FC-BS/FC-BS10Q.Seq.d/ 1122 0.0
VHO862 (VHO862Q) /CSM/VH/VHO8-C/VHO862Q.Seq.d/ 1114 0.0
VHO660 (VHO660Q) /CSM/VH/VHO6-C/VHO660Q.Seq.d/ 1114 0.0
VHK609 (VHK609Q) /CSM/VH/VHK6-A/VHK609Q.Seq.d/ 1114 0.0
VHK519 (VHK519Q) /CSM/VH/VHK5-A/VHK519Q.Seq.d/ 1114 0.0
VHI695 (VHI695Q) /CSM/VH/VHI6-D/VHI695Q.Seq.d/ 1114 0.0
VHH181 (VHH181Q) /CSM/VH/VHH1-D/VHH181Q.Seq.d/ 1114 0.0
VHE445 (VHE445Q) /CSM/VH/VHE4-B/VHE445Q.Seq.d/ 1114 0.0
VHC289 (VHC289Q) /CSM/VH/VHC2-D/VHC289Q.Seq.d/ 1114 0.0
VHA544 (VHA544Q) /CSM/VH/VHA5-B/VHA544Q.Seq.d/ 1114 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BQ090955|BQ090955.1 ku22f10.y1 Strongyloides ratti L3 adult pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:ATPB_CAEEL P46561 PROBABLE ATP SYNTHASE BETA CHAIN, MITOCHONDRIAL PRECURSOR ;, mRNA sequence. 84 1e-18 2
BI772838|BI772838.1 kp46c08.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to SW:ATPB_CAEEL P46561 PROBABLE ATP SYNTHASE BETA CHAIN, MITOCHONDRIAL PRECURSOR ;, mRNA sequence. 76 2e-17 2
BF779978|BF779978.1 3255-4 hindgut and Malpighian tubule cDNA library Ctenocephalides felis cDNA clone 3255-4, mRNA sequence. 84 3e-16 2
AL423624|AL423624.1 T7 end of clone AZ0AA009E07 of library AZ0AA from strain CBS 712 of Kluyveromyces marxianus. 64 9e-15 2
AL422806|AL422806.1 T3 end of clone AZ0AA004D12 of library AZ0AA from strain CBS 712 of Kluyveromyces marxianus. 64 1e-14 2
AL132798|AL132798.2 S.pombe chromosome I cosmid c222. 66 1e-14 5
AR089428|AR089428.1 Sequence 187 from patent US 5994066. 54 1e-13 4
AB035129|AB035129.1 Colwellia maris DNA, atp operon genes (atpB, atpE, atpF, atpH, atpA, atpG, atpD, atpC), complete sequence. 56 1e-13 3
AB014034|AB014034.1 Chlamydomonas debaryana chloroplast atpB gene for ATP synthase beta-subunit, strain UTEX 1344, partial cds. 62 6e-13 2
AB014040|AB014040.1 Paulschulzia pseudovolvox chloroplast atpB gene for ATP synthase beta-subunit, strain UTEX 167, partial cds. 56 6e-13 2
dna update 2003. 7.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q3YS09) RecName: Full=ATP synthase subunit beta; EC=3.... 162 9e-39
AE016815_382(AE016815|pid:none) Ashbya gossypii (= Eremothecium ... 160 5e-38
CP000613_2189(CP000613|pid:none) Rhodospirillum centenum SW, com... 159 6e-38
(P49376) RecName: Full=ATP synthase subunit beta, mitochondrial;... 159 8e-38
AB104883_1(AB104883|pid:none) Zygosaccharomyces rouxii ZrATP2 ge... 158 1e-37
CP001016_215(CP001016|pid:none) Beijerinckia indica subsp. indic... 157 2e-37
(Q73IG3) RecName: Full=ATP synthase subunit beta; EC=3.... 157 3e-37
CP000498_39(CP000498|pid:none) Pichia stipitis CBS 6054 chromoso... 157 3e-37
(P38482) RecName: Full=ATP synthase subunit beta, mitochondrial;... 157 4e-37
(B0T335) RecName: Full=ATP synthase subunit beta; EC=3.... 156 5e-37
protein update 2009. 4.14
PSORT

psg: 0.64 gvh: 0.33 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for FC-BS10 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-BS10Z
3' end seq.
>FC-BS10Z.Seq
----------CAAATATTATTGGTGTTGAACATTACAAAGTTGCCACCGATGTACAAAAG
ATCCTCCAAGAATATAAATCACTTCAAGATATTATTGCCATTTTAGGTATGGATGATTTA
TCTGAAGACCAAAAAGCAACTGTATTCCGTGCTCGTAAGATTCAACGTTTCTTATCACAA
CCATTCGAAGTTGCCCACGCCTTCACCAATATGGAAGGTAGATTCGTTAAACTCTCCGAC
TCTATCAAAGCCTTCAAAGGTATCCTCGAAGGTAAATACGATCATCTCCCAGAAGCTGCC
TTCTATATGGTTGGTGGTATCGAAGATTTCGAAATTAAAGCTGCTAAACTCTTAGAATCC
GCTGGTAAAGAAGAAAAGAAAACCACCACTACCTCCACCACTGGTCAAGTCAAAGAAGAA
ACTGTCAGAGAAAAAGTTACCAGACTCGTCGATGAAGCTTACAATGCTAAAGTCAAGAAA
TTAAAGGAATATGGTGCCTCAACTGCTCACCTTGAAGAATTACGTGCTCAATATGAAAAG
AACTTTGAATCTGAAATCAGTCAATTAGAAGTTTTATTAAAAAAATAAATTAACTTCCAA
AACTAAAAATAATTATATAATATTCAAATACTAAGAAAAAAAAAAATAAAAAAAAAAATA
AATGTGAAAAAACACTTATAATATAATAGTAATAAAAAAAATAATAAAAATATTCAAGTT
TTAAATGTAA
Length of 3' end seq. 720
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -