>FC-BS11 (FC-BS11Q) /CSM/FC/FC-BS/FC-BS11Q.Seq.d/
XXXXXXXXXXCAGAGGTACACCAAGAATTAGCATGTAATCATGATCATAACAGTATTTAT
AATCATGTTTTAGAAATTGTAAATGATTCAAAATATACTGATAGAGATAAATTAGTATTA
GTACTTTTATATAGTATTAGATATGAAGATGGTAGAGTTTGGGAATTAAAAGAAAAATTA
TCAAGTATTGGTATTCCTCCAAAAGAAATTGGTTTAATTGATACATTAAGAGGATATGCA
GGTGCAAGTTTAAGAGAAGGTGATTTATTAGGAACTAAAAATATTTTTTCATTTGCAAGA
AGTGTTGTTAAACGTGGTTTACAAGGTGTTTCAAATATTTATACTCAACATAAACCATTA
TTACATGATATTTTAGATAGTATTTTAAAGAACAAATTAAAAGAAACCTCTTATCCATAC
TTATCAACAACTCAATCAAGAGAGAGACCACAAGATGTAATTATATTTATGGTTGGTGGT
ATCACTTATGAAGAGGCATTAACCGTTTACACTTTTAATTCTTTAAATACTGGTGTTTGT
CGTGTTGTATTAGGTGGTACTTCAATTTTAAATCGTGAACAATTTTTAGAAGATTTATCA
AGTACTCAAATTTCTAATCCTTCTAGTAGTAGTGATAGAAGATAAAAATAAAAAAATAAA
AAAATAATAATAATAATAATAATTTTAAAAAAA

---EVHQELACNHDHNSIYNHVLEIVNDSKYTDRDKLVLVLLYSIRYEDGRVWELKEKLS
SIGIPPKEIGLIDTLRGYAGASLREGDLLGTKNIFSFARSVVKRGLQGVSNIYTQHKPLL
HDILDSILKNKLKETSYPYLSTTQSRERPQDVIIFMVGGITYEEALTVYTFNSLNTGVCR
VVLGGTSILNREQFLEDLSSTQISNPSSSSDRR*k*knkkiiiiiiilkk

Frame A:
---rgtprism*s*s*qyl*scfrnck*fkiy**r*isistfi*y*i*rw*slgikrkii
kywysskrnwfn*yikricrckfkrr*firn*kyffickkcc*twftrcfkylyst*tii
t*yfr*yfkeqikrnllsilinnsikrettrcnyiygwwyhl*rginrlhf*ffkywcls
ccirwyfnfks*tifrrfikysnf*sf*****kikikk*knnnnnnnfkk


Frame B:
---EVHQELACNHDHNSIYNHVLEIVNDSKYTDRDKLVLVLLYSIRYEDGRVWELKEKLS
SIGIPPKEIGLIDTLRGYAGASLREGDLLGTKNIFSFARSVVKRGLQGVSNIYTQHKPLL
HDILDSILKNKLKETSYPYLSTTQSRERPQDVIIFMVGGITYEEALTVYTFNSLNTGVCR
VVLGGTSILNREQFLEDLSSTQISNPSSSSDRR*k*knkkiiiiiiilkk


Frame C:
---rytkn*hvimiitvfiimf*kl*miqniliein*y*yfyivldmkmvefgn*kknyq
vlvflqkklv*lih*edmqvqv*ekviy*elkiffhlqevllnvvykvfqifilninhyy
mif*ivf*rtn*kkplihtyqqlnqerdhkm*lylwlvvslmkrh*pftllil*ilvfvv
ly*vvlqf*ivnnf*kiyqvlkflillvvviedknkkikk******f*k

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BS11 (FC-BS11Q) /CSM/FC/FC-BS/FC-BS11Q.Seq.d/                     1251   0.0
VFK543 (VFK543Q) /CSM/VF/VFK5-B/VFK543Q.Seq.d/                       1235   0.0
AFI471 (AFI471Q) /CSM/AF/AFI4-C/AFI471Q.Seq.d/                       1229   0.0
SFC628 (SFC628Q) /CSM/SF/SFC6-B/SFC628Q.Seq.d/                       1225   0.0
CHI228 (CHI228Q) /CSM/CH/CHI2-B/CHI228Q.Seq.d/                       1225   0.0
CFJ265 (CFJ265Q) /CSM/CF/CFJ2-C/CFJ265Q.Seq.d/                       1225   0.0
SSJ643 (SSJ643Q) /CSM/SS/SSJ6-B/SSJ643Q.Seq.d/                       1221   0.0
SFI855 (SFI855Q) /CSM/SF/SFI8-C/SFI855Q.Seq.d/                       1219   0.0
CFJ234 (CFJ234Q) /CSM/CF/CFJ2-B/CFJ234Q.Seq.d/                       1219   0.0
AFO808 (AFO808Q) /CSM/AF/AFO8-A/AFO808Q.Seq.d/                       1219   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    40  1e-04  9
AE014843|AE014843.1 Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete sequence.    36  0.12  6
AC018886|AC018886.4 Homo sapiens chromosome 5 clone RP11-383P1, WORKING DRAFT SEQUENCE, 21 unordered pieces.    40  0.13  2
BX545906|BX545906.2 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-476J8.    34  0.14  5
AP004174|AP004174.1 Mycoplasma penetrans genomic DNA, complete sequence, section 5/5.    36  0.19  8
AP003135|AP003135.2 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome, section 7/10.    38  0.28  7
AX323833|AX323833.1 Sequence 321 from Patent WO0192565.           36  0.33  3
AC129940|AC129940.3 Mus musculus clone RP23-310N20, WORKING DRAFT SEQUENCE, 36 unordered pieces.    36  0.50  6
AC099349|AC099349.10 Rattus norvegicus clone CH230-4G5, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    46  0.50  2
BX323500|BX323500.1 Arabidopsis thaliana transposon insertion STS SM_3.36656.    46  0.56  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GE3) RecName: Full=Vacuolar protein sorting-associated prote...   387   e-106
AK146190_1(AK146190|pid:none) Mus musculus CRL-1722 L5178Y-R cDN...   164   2e-39
AK295529_1(AK295529|pid:none) Homo sapiens cDNA FLJ54353 complet...   164   2e-39
AK223214_1(AK223214|pid:none) Homo sapiens mRNA for vacuolar pro...   164   2e-39
AJ133421_1(AJ133421|pid:none) Homo sapiens mRNA for leucocyte va...   164   2e-39
(Q9NRW7) RecName: Full=Vacuolar protein sorting-associated prote...   164   2e-39
BC123422_1(BC123422|pid:none) Bos taurus vacuolar protein sortin...   163   5e-39
AJ720470_1(AJ720470|pid:none) Gallus gallus mRNA for hypothetica...   160   4e-38
AF036234_1(AF036234|pid:none) Arabidopsis thaliana vacuolar prot...   159   9e-38
BC084162_1(BC084162|pid:none) Xenopus laevis hypothetical LOC495...   159   9e-38

 psg: 0.75  gvh: 0.46  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: mitochondrial

>> prediction for FC-BS11 is cyt

>FC-BS11Z.Seq
----------CAGAGGTACACCAAGAATTAGCATGTAATCATGATCATAACAGTATTTAT
AATCATGTTTTAGAAATTGTAAATGATTCAAAATATACTGATAGAGATAAATTAGTATTA
GTACTTTTATATAGTATTAGATATGAAGATGGTAGAGTTTGGGAATTAAAAGAAAAATTA
TCAAGTATTGGTATTCCTCCAAAAGAAATTGGTTTAATTGATACATTAAGAGGATATGCA
GGTGCAAGTTTAAGAGAAGGTGATTTATTAGGAACTAAAAATATTTTTTCATTTGCAAGA
AGTGTTGTTAAACGTGGTTTACAAGGTGTTTCAAATATTTATACTCAACATAAACCATTA
TTACATGATATTTTAGATAGTATTTTAAAGAACAAATTAAAAGAAACCTCTTATCCATAC
TTATCAACAACTCAATCAAGAGAGAGACCACAAGATGTAATTATATTTATGGTTGGTGGT
ATCACTTATGAAGAGGCATTAACCGTTTACACTTTTAATTCTTTAAATACTGGTGTTTGT
CGTGTTGTATTAGGTGGTACTTCAATTTTAAATCGTGAACAATTTTTAGAAGATTTATCA
AGTACTCAAATTTCTAATCCTTCTAGTAGTAGTGATAGAAGATAAAAATAAAAAAATAAA
AAAATAATAATAATAATAATAATTTTAAAAAAA