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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-BS19
Library FC
(Link to library)
Clone ID FC-BS19
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16583-1
Original site URL
Representative seq. ID FC-BS19E
(Link to Original site)
Representative DNA sequence 
>FC-BS19 (FC-BS19Q) /CSM/FC/FC-BS/FC-BS19Q.Seq.d/
CGGAAAGAAAGAAGTCAAGCCCCAAAAGTTGTTGAAGCTTTATCAGCCAAAATCCCATGT
GGTCCAAGTGAATTAGTCTTTGGTGTTGCCCATATCTTCGCCTCATTCAATGATACCTTT
GTCCACGTCACTGATTTATCCTCAAAAGAAACCATTGTTCGTGTTACTGGTGGTATGAAA
GTTAAAACCGATCGTGATGAATCTTCACCATACGCTGCCACCATGGCCGCTCAAGATGTC
GCCCTCCGTTGTAAAGAACTCGGTGTCACTGCTCTCCATATTAAATTAAGAGCTACCGGT
GGTAATGGTTCAAAGACCCCAGGTCCAGGTGCTCAATCTGCCCTCAGAGCTTTAGCTCGT
TCAGGTATGAGAATTGGTCGTATTGAAGATGTTACCCCAATTCCAACTGATTCAACCAGA
AGAAAGAGCGGTCATCGTGGTAGACGTTTATAAACATTTGGATCTCATCATTCAAGTGCT
TTTTTAATAATAATACTACAACCTTTTAAATTTTAAAAAAAACCAAAAAAAAAACAATTT
GTTTTAATACAACAACAACTCTAATAAAATAGGTATTGATTCAAATTTTTTAAAAAAAAA
AAAA
sequence update 1998. 5.12
Translated Amino Acid sequence 
RKERSQAPKVVEALSAKIPCGPSELVFGVAHIFASFNDTFVHVTDLSSKETIVRVTGGMK
VKTDRDESSPYAATMAAQDVALRCKELGVTALHIKLRATGGNGSKTPGPGAQSALRALAR
SGMRIGRIEDVTPIPTDSTRRKSGHRGRRL*tfgshhssafliiilqpfkf*kkpkkkqf
vliqqql**nry*fkffkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
RKERSQAPKVVEALSAKIPCGPSELVFGVAHIFASFNDTFVHVTDLSSKETIVRVTGGMK
VKTDRDESSPYAATMAAQDVALRCKELGVTALHIKLRATGGNGSKTPGPGAQSALRALAR
SGMRIGRIEDVTPIPTDSTRRKSGHRGRRL*tfgshhssafliiilqpfkf*kkpkkkqf
vliqqql**nry*fkffkkkk


Frame B:
gkkevkpqkllklyqpkshvvqvn*slvlpissphsmiplstsliypqkkplfvllvv*k
lkpivmnlhhtlppwplkmspsvvknsvsllsiln*elpvvmvqrpqvqvlnlpsel*lv
qv*elvvlkmlpqfqliqpeeravivvdvykhldliiqvlf***yynllnfkknqkknnl
f*ynnnsnkigidsnflkkkk


Frame C:
erkksspksc*sfisqnpmwsk*islwccpylrliq*ylcprh*filkrnhcscywwyes
*nrs**iftirchhgrsrcrppl*rtrchcspy*iksyrw*wfkdprsrcsicpqsfssf
ryenwsy*rcypnsn*fnqkkerssw*tfiniwissfkcffnnntttf*ilkktkkktic
fnttttlik*vliqif*kkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BS19 (FC-BS19Q) /CSM/FC/FC-BS/FC-BS19Q.Seq.d/                     1019   0.0
VSK147 (VSK147Q) /CSM/VS/VSK1-B/VSK147Q.Seq.d/                        997   0.0
VSH759 (VSH759Q) /CSM/VS/VSH7-C/VSH759Q.Seq.d/                        997   0.0
VSH736 (VSH736Q) /CSM/VS/VSH7-B/VSH736Q.Seq.d/                        997   0.0
VSH639 (VSH639Q) /CSM/VS/VSH6-B/VSH639Q.Seq.d/                        997   0.0
VSH511 (VSH511Q) /CSM/VS/VSH5-A/VSH511Q.Seq.d/                        997   0.0
VSH460 (VSH460Q) /CSM/VS/VSH4-C/VSH460Q.Seq.d/                        997   0.0
VSH243 (VSH243Q) /CSM/VS/VSH2-B/VSH243Q.Seq.d/                        997   0.0
VSF876 (VSF876Q) /CSM/VS/VSF8-D/VSF876Q.Seq.d/                        997   0.0
VSF230 (VSF230Q) /CSM/VS/VSF2-B/VSF230Q.Seq.d/                        997   0.0
own update 2001. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BI773239|BI773239.1 kx03f05.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RS14_CAEEL P48150 PROBABLE 40S RIBOSOMAL PROTEIN S14. [1] ;, mRNA sequence.    92   2e-34  3
CA286818|CA286818.1 SCSBSD2054A09.g SD2 Saccharum officinarum cDNA clone SCSBSD2054A09 5', mRNA sequence.    96   2e-29  2
BI703786|BI703786.1 kx23c06.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:RS14_CAEEL P48150 PROBABLE 40S RIBOSOMAL PROTEIN S14. [1] ;, mRNA sequence.    92   2e-28  2
AF365406|AF365406.1 Candida albicans YIP3-like protein (YIP3) gene, partial cds; and ribosomal protein L39 (RPL39), ribosomal protein S22 (RPS22), and ribosomal protein S14 (RPS14) genes, complete cds.    86   7e-27  3
BF114468|BF114468.1 SsS0203 Suaeda salsa ZAP cDNA library Suaeda maritima subsp. salsa cDNA similar to 40S ribosomal protein, mRNA sequence.    88   2e-25  2
AW991129|AW991129.1 SsS0303 Suaeda salsa ZAP cDNA library Suaeda maritima subsp. salsa cDNA similar to putative 40S ribosomal protein s14, mRNA sequence.    88   2e-25  2
BM027149|BM027149.1 GIT0000446 Root-induced cDNA library from Glomus intraradices Glomus intraradices cDNA, mRNA sequence.    78   5e-25  3
CA994826|CA994826.1 Hc_L4_26D04_SKPL Haemonchus contortus L4 SL1 from David Knox Haemonchus contortus cDNA clone Hc_L4_26D04 5' similar to F37C12.9 CE00821 locus:rps-14 Ribosomal protein S14, mRNA sequence.    74   2e-24  3
AL418236|AL418236.1 T7 end of clone AX0AA030B05 of library AX0AA from strain CBS 7064 of Pichia farinosa.    62   2e-24  5
BM072972|BM072972.1 MEST56-F08.T3 ISUM4-TN Zea mays cDNA clone MEST56-F08 3', mRNA sequence.    66   6e-24  3
dna update 2003.12.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54EG3) RecName: Full=40S ribosomal protein S14;                     286   2e-76
(Q08699) RecName: Full=40S ribosomal protein S14;  &X71384_1(X71...   229   5e-59
BT070377_1(BT070377|pid:none) Picea sitchensis clone WS02725_B22...   229   5e-59
(P19950) RecName: Full=40S ribosomal protein S14; AltName: Full=...   229   6e-59
EU960087_1(EU960087|pid:none) Zea mays clone 221629 40S ribosoma...   228   1e-58
BT071645_1(BT071645|pid:none) Picea sitchensis clone WS0294_B08 ...   228   1e-58
(P46295) RecName: Full=40S ribosomal protein S14;  &A56064(A5606...   227   2e-58
BT034561_1(BT034561|pid:none) Zea mays full-length cDNA clone ZM...   227   2e-58
BT058253_1(BT058253|pid:none) Salmo salar clone Contig2841 40S r...   227   2e-58
BT043880_1(BT043880|pid:none) Salmo salar clone HM5_2814 ribosom...   227   2e-58
protein update 2009. 7. 3
PSORT 

 psg: 0.70  gvh: 0.43  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for FC-BS19 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-BS19E
Full length Seq. 
>FC-BS19E.Seq
CGGAAAGAAAGAAGTCAAGCCCCAAAAGTTGTTGAAGCTTTATCAGCCAAAATCCCATGT
GGTCCAAGTGAATTAGTCTTTGGTGTTGCCCATATCTTCGCCTCATTCAATGATACCTTT
GTCCACGTCACTGATTTATCCTCAAAAGAAACCATTGTTCGTGTTACTGGTGGTATGAAA
GTTAAAACCGATCGTGATGAATCTTCACCATACGCTGCCACCATGGCCGCTCAAGATGTC
GCCCTCCGTTGTAAAGAACTCGGTGTCACTGCTCTCCATATTAAATTAAGAGCTACCGGT
GGTAATGGTTCAAAGACCCCAGGTCCAGGTGCTCAATCTGCCCTCAGAGCTTTAGCTCGT
TCAGGTATGAGAATTGGTCGTATTGAAGATGTTACCCCAATTCCAACTGATTCAACCAGA
AGAAAGAGCGGTCATCGTGGTAGACGTTTATAAACATTTGGATCTCATCATTCAAGTGCT
TTTTTAATAATAATACTACAACCTTTTAAATTTTAAAAAAAACCAAAAAAAAAACAATTT
GTTTTAATACAACAACAACTCTAATAAAATAGGTATTGATTCAAATTTTTTAAAAAAAAA
AAAA
Length of full length seq. 604