FC-BS24
Library FC
(Link to library)
Clone ID FC-BS24
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16209-1
Original site URL
Representative seq. ID FC-BS24Z
(Link to Original site)
Representative DNA sequence
>FC-BS24 (FC-BS24Q) /CSM/FC/FC-BS/FC-BS24Q.Seq.d/
XXXXXXXXXXAGCTTGTCAAACCCATCTCGGTGGTAACAACGTTGATGTTGAAATGGAAT
CATACACCTGGAAGAGAAAGGATAATGGTCACTTCATCATCAATCTTGCCAAAACTTGGG
AAAAGATTCAATTAGCTGCTCGTGTCATCGTTGCTATTGAAAACCCAGCTGATATCTCAG
TTATCTCTGCCAAACCATTGGGTCAACGTGCCGTCCTCAAATTCGCCAACTTTATCGGTG
CCACCGCTTTCTCTGGTCGTTTCACCCCAGGTACCTTTACCAATCAAATCCAATCAAAAT
TCACTGAACCAAGACTTTTGATTGTTGCTGATCCATTATTAGATAAACAACCATTAATGG
AAGCTTCATACGTAAATATCCCAACCATCGCTCTCTGTGATACCACCTCATGTTTAGACG
GTGTTGATATTGCTATCCCATGTAACAACCGTGGTAAAAACTCAATTGCCTTAATGTTCT
GGTTATTAGCTCGTGAAGTTTTATACTTAAGAGGTACCATCCCAAGAAACACCACCTGGT
CTGTCAAAGTCGATCTCTTCATCTACAGAGATACTGATGAAGAACCAGAAAAAGAAAAAA
CCGCCGCTGCTTGCTGCCGCTCCAGTTGCTGCCGTTGAAGCTGTTGAATTCACTCAACAA
CCAATTGCAAAATGGTCTGCTCCAGATAACTAAATTAATTAATAAAATAATTATTTAGAT
TTTTTTAAAAA
sequence update 1998. 5.18
Translated Amino Acid sequence
---ACQTHLGGNNVDVEMESYTWKRKDNGHFIINLAKTWEKIQLAARVIVAIENPADISV
ISAKPLGQRAVLKFANFIGATAFSGRFTPGTFTNQIQSKFTEPRLLIVADPLLDKQPLME
ASYVNIPTIALCDTTSCLDGVDIAIPCNNRGKNSIALMFWLLAREVLYLRGTIPRNTTWS
VKVDLFIYRDTDEEPEKEKTAAACCRSSCCR*sc*ihsttnckmvcsr*ln*lik*lfrf
f*k


Translated Amino Acid sequence (All Frames)
Frame A:
---ACQTHLGGNNVDVEMESYTWKRKDNGHFIINLAKTWEKIQLAARVIVAIENPADISV
ISAKPLGQRAVLKFANFIGATAFSGRFTPGTFTNQIQSKFTEPRLLIVADPLLDKQPLME
ASYVNIPTIALCDTTSCLDGVDIAIPCNNRGKNSIALMFWLLAREVLYLRGTIPRNTTWS
VKVDLFIYRDTDEEPEKEKTAAACCRSSCCR*sc*ihsttnckmvcsr*ln*lik*lfrf
f*k


Frame B:
---lvkpisvvttlmlkwnhtpgrerimvtsssilpklgkrfn*llvsslllktqlisql
slpnhwvnvpssnsptlsvpplslvvspqvplpiksnqnslnqdf*lllihy*innh*wk
lht*isqpslsvipphv*tvlillshvttvvktqlp*csgy*lvkfyt*evpsqetppgl
sksisssteilmknqkkkkppllaaapvaaveaveftqqpiakwsapdn*in**nnyldf
fk


Frame C:
---lsnpsrw*qr*c*ngiihleekg*wslhhqscqnlgkdsiscschrcy*kps*ylsy
lcqtigstcrpqirqlyrchrflwsfhprylyqsnpikih*tktfdcc*siir*ttings
firkypnhrsl*yhlmfrrc*ycypm*qpw*klnclnvlviss*sfilkryhpkkhhlvc
qsrslhlqry**rtrkrknrrcllplqllplkllnslnnqlqngllqitklinkiii*if
lk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-BS24 (FC-BS24Q) /CSM/FC/FC-BS/FC-BS24Q.Seq.d/ 1334 0.0
SLH669 (SLH669Q) /CSM/SL/SLH6-C/SLH669Q.Seq.d/ 1302 0.0
FC-BL17 (FC-BL17Q) /CSM/FC/FC-BL/FC-BL17Q.Seq.d/ 1302 0.0
FC-511 (FC-511Q) /CSM/CG/CG-FC/FC-511Q.Seq.d/ 1302 0.0
VHH685 (VHH685Q) /CSM/VH/VHH6-D/VHH685Q.Seq.d/ 1241 0.0
VHA158 (VHA158Q) /CSM/VH/VHA1-C/VHA158Q.Seq.d/ 1201 0.0
VSG286 (VSG286Q) /CSM/VS/VSG2-D/VSG286Q.Seq.d/ 1108 0.0
VFN818 (VFN818Q) /CSM/VF/VFN8-A/VFN818Q.Seq.d/ 969 0.0
SSI527 (SSI527Q) /CSM/SS/SSI5-B/SSI527Q.Seq.d/ 797 0.0
VSC141 (VSC141Q) /CSM/VS/VSC1-B/VSC141Q.Seq.d/ 361 1e-98

own update 2002.10. 7
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BG661617|BG661617.1 kx04b11.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RSP4_CAEEL P46769 PROBABLE 40S RIBOSOMAL PROTEIN SA ;, mRNA sequence. 52 9e-12 4
BQ096846|BQ096846.1 IfHdk00487 Ictalurus furcatus head kidney cDNA library Ictalurus furcatus cDNA 5' similar to Ribosomal protein Sa (laminin receptor 1), mRNA sequence. 46 2e-11 4
BI744098|BI744098.1 kx55f06.y1 Parastrongyloides trichosuri PA pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:RSP4_CAEEL P46769 PROBABLE 40S RIBOSOMAL PROTEIN SA ;, mRNA sequence. 44 7e-11 4
BG661838|BG661838.1 kx07a08.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RSP4_CAEEL P46769 PROBABLE 40S RIBOSOMAL PROTEIN SA ;, mRNA sequence. 44 1e-10 4
BM438323|BM438323.1 IpLvr01076 Liver cDNA library Ictalurus punctatus cDNA 5' similar to Ribosomal protein Sa, mRNA sequence. 42 7e-08 3
AL113982|AL113982.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 42 2e-07 3
BF015060|BF015060.1 kq60g07.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to SW:RSP4_CAEEL P46769 PROBABLE 40S RIBOSOMAL PROTEIN SA ;, mRNA sequence. 44 2e-07 3
BE579229|BE579229.1 kq24c12.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:B0393.1 CE00854 PROBABLE 40S RIBOSOMAL PROTEIN SA ;, mRNA sequence. 44 2e-07 3
BF015036|BF015036.1 kq60e02.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to SW:RSP4_CAEEL P46769 PROBABLE 40S RIBOSOMAL PROTEIN SA ;, mRNA sequence. 44 3e-07 3
BG226834|BG226834.1 kp94c07.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:B0393.1 CE00854 PROBABLE 40S RIBOSOMAL PROTEIN SA ;, mRNA sequence. 44 3e-07 3
dna update 2003. 7.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EF103361_1(EF103361|pid:none) Haliotis discus discus raminin rec... 266 4e-70
BT043675_1(BT043675|pid:none) Salmo salar clone HM5_1686 ribosom... 261 1e-68
BT049047_1(BT049047|pid:none) Salmo salar clone ssal-rgb2-530-26... 261 1e-68
(P38981) RecName: Full=40S ribosomal protein SA; AltName: Full=p... 261 2e-68
AY550956_1(AY550956|pid:none) Sparus aurata 40S ribosomal protei... 261 2e-68
EU558331_1(EU558331|pid:none) Phoronis muelleri putative 40S rib... 260 3e-68
DQ213582_1(DQ213582|pid:none) Taeniopygia guttata clone 0058P003... 259 7e-68
EU302586_1(EU302586|pid:none) Lineus viridis ribosomal protein r... 259 7e-68
(Q4GWZ2) RecName: Full=40S ribosomal protein SA; AltName: Full=L... 258 1e-67
DQ212985_1(DQ212985|pid:none) Equus caballus laminin receptor 1 ... 258 1e-67
protein update 2009. 4.14
PSORT

psg: 0.78 gvh: 0.34 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.12 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.50 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

88.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: nuclear

>> prediction for FC-BS24 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-BS24Z
3' end seq.
>FC-BS24Z.Seq
----------AGCTTGTCAAACCCATCTCGGTGGTAACAACGTTGATGTTGAAATGGAAT
CATACACCTGGAAGAGAAAGGATAATGGTCACTTCATCATCAATCTTGCCAAAACTTGGG
AAAAGATTCAATTAGCTGCTCGTGTCATCGTTGCTATTGAAAACCCAGCTGATATCTCAG
TTATCTCTGCCAAACCATTGGGTCAACGTGCCGTCCTCAAATTCGCCAACTTTATCGGTG
CCACCGCTTTCTCTGGTCGTTTCACCCCAGGTACCTTTACCAATCAAATCCAATCAAAAT
TCACTGAACCAAGACTTTTGATTGTTGCTGATCCATTATTAGATAAACAACCATTAATGG
AAGCTTCATACGTAAATATCCCAACCATCGCTCTCTGTGATACCACCTCATGTTTAGACG
GTGTTGATATTGCTATCCCATGTAACAACCGTGGTAAAAACTCAATTGCCTTAATGTTCT
GGTTATTAGCTCGTGAAGTTTTATACTTAAGAGGTACCATCCCAAGAAACACCACCTGGT
CTGTCAAAGTCGATCTCTTCATCTACAGAGATACTGATGAAGAACCAGAAAAAGAAAAAA
CCGCCGCTGCTTGCTGCCGCTCCAGTTGCTGCCGTTGAAGCTGTTGAATTCACTCAACAA
CCAATTGCAAAATGGTCTGCTCCAGATAACTAAATTAATTAATAAAATAATTATTTAGAT
TTTTTTAAAAA
Length of 3' end seq. 721
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -