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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFC702
Library SF
(Link to library)
Clone ID SFC702
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U00917-1
Original site URL
Representative seq. ID SFC702P
(Link to Original site)
Representative DNA sequence 
>SFC702 (SFC702Q) /CSM/SF/SFC7-A/SFC702Q.Seq.d/
ATATTAAGTTAAAAGCGTGCAAATACAAACCAAACACAAACACAAACACAAATATTCACA
TAAACACTAATACACAAAAATAAATAATAGAAAATAAATAGAAAAATAGTTTTTTGGAAA
ATAAATAATAGAAAATAAATAAAAAAATATTTATACATACATACATACATACAATTCAAA
TAAATAATGAAGTTTGATACAACTAAATATTATCTACTTTTAGAACTACCAGTTGATTGT
TCACAAGATGATATAAAAAGATCATACCGTGCCTTAGCGTTAAGATATCATCCAGATAGA
AATCCAGATCCAACAGCAGCAGAAGCATTTAAAGAAATAGCAGAAGCATATGAAGTATTA
TXXXXXXXXXXTCAAGAGAACACTATGAAAAACGTTTTTCATCACCAGAACATTTAGATA
CTTGTACAAATTTTGGTTTGGGTCATCCAGGTTTTATTTTACGTAAATTGTTGAGAGATT
TAGTTGCAAGTTGGTTCTTTGTTTTCCTAATGTTAAAATTGGATCATGTAGTTGAATGGA
ATTGGTGGATAAATTCAATTCCTGTCTTTTTTTACATCATTTTCTATTTGGTTTTAATGG
CATTAGATAATAGTTCAAAAATGAACAATTTATCAATGGATGAAGATGAAAGAGCCTCAA
ATGAAAGTGTTAATAGTTTCTTATATTGTATTTTCATTTTCTTAATGATTCCAGTTATCT
TATTTATTTCTTTATTAGCTGCTCATATCTCTGCTGATAGATTTGCAATTGCNTAATGTA
TTCATTCCAATTTTTATTGTTTTAGGTCTTTTAACTTGTGCATATTGTATTTTTGCATGT
TGTGCTTTAGCTGCAGCAAAGGGACAAGGAATGGAAGATTTCCCAGGTGGTTCACCAACT
CAAAATATCGCTTCAATCATTAACAGTAGAATGTTAAGACCACAAAAATTCTTGGAAGCT
CAACACTTACCAACAACCAGTACCTCTGTTGGTGTAGAAAATGTTAATTTTACCAAAATA
AAGAGTAAAAAGTTCACATATATATAAAATTT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ils*krantnqtqtqtqift*tlihknk**kinrkivfwkinnrk*ikkylyihtyiqfk
*IMKFDTTKYYLLLELPVDCSQDDIKRSYRALALRYHPDRNPDPTAAEAFKEIAEAYEVL
---

---SREHYEKRFSSPEHLDTCTNFGLGHPGFILRKLLRDLVASWFFVFLMLKLDHVVEWN
WWINSIPVFFYIIFYLVLMALDNSSKMNNLSMDEDERASNESVNSFLYCIFIFLMIPVIL
FISLLAAHISADRFAIA*cihsnfycfrsfnlcilyfcmlcfscskgtrngrfprwftns
kyrfnh*q*nvkttkilgsstltnnqylcwcrkc*fyqnke*kvhiyikf
Translated Amino Acid sequence (All Frames) 
Frame A:
ils*krantnqtqtqtqift*tlihknk**kinrkivfwkinnrk*ikkylyihtyiqfk
*IMKFDTTKYYLLLELPVDCSQDDIKRSYRALALRYHPDRNPDPTAAEAFKEIAEAYEVL
---

---SREHYEKRFSSPEHLDTCTNFGLGHPGFILRKLLRDLVASWFFVFLMLKLDHVVEWN
WWINSIPVFFYIIFYLVLMALDNSSKMNNLSMDEDERASNESVNSFLYCIFIFLMIPVIL
FISLLAAHISADRFAIA*cihsnfycfrsfnlcilyfcmlcfscskgtrngrfprwftns
kyrfnh*q*nvkttkilgsstltnnqylcwcrkc*fyqnke*kvhiyikf

Frame B:
y*vksvqiqtkhkhkhkyshkh*ytkinnrk*iek*ffgk*iienk*kniytyihtynsn
k**sliqlniiyf*nyqlivhkmi*kdhtvp*r*diiqieiqiqqqqkhlkk*qkhmkyy
---

---qentmknvfhhqni*ilvqilvwviqvlfyvnc*ei*lqvgslfs*c*nwim*lngi
gg*iqflsfftsfsiwf*wh*iivqk*tiyqwmkmkepqmkvlivsyivfsfs**fqlsy
lfly*llisllidlqlxnvfipifivlglltcaycifaccalaaakgqgmedfpggsptq
niasiinsrmlrpqkfleaqhlpttstsvgvenvnftkikskkftyi*n

Frame C:
iklkackykpntntntnihintntqk*iienk*knsflenk**kinkkifihtyihtiqi
nnev*yn*ilstfrtts*lftr*ykkiipclsvkissr*ksrsnssrsi*rnsrsi*si-
--

---krtl*ktffitrtfrylykfwfgssrfyft*iverfscklvlcfpnvkigscs*mel
vdkfnsclflhhflfgfngir**fkneqfing*r*kslk*kc**flilyfhflndssyli
yffiscsylc**icncxmysfqfllf*vf*lvhivflhvvl*lqqrdkewkisqvvhqlk
islqsltvec*dhknswklntyqqpvpllv*kmlilpk*rvksshiyki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFC702 (SFC702Q) /CSM/SF/SFC7-A/SFC702Q.Seq.d/                       1606   0.0
SLD494 (SLD494Q) /CSM/SL/SLD4-D/SLD494Q.Seq.d/                        890   0.0
SLC464 (SLC464Q) /CSM/SL/SLC4-C/SLC464Q.Seq.d/                        678   0.0
SSA168 (SSA168Q) /CSM/SS/SSA1-C/SSA168Q.Seq.d/                        321   1e-86
SLK260 (SLK260Q) /CSM/SL/SLK2-C/SLK260Q.Seq.d/                         42   0.017
SLH345 (SLH345Q) /CSM/SL/SLH3-B/SLH345Q.Seq.d/                         42   0.017
SFL451 (SFL451Q) /CSM/SF/SFL4-C/SFL451Q.Seq.d/                         42   0.017
SFL377 (SFL377Q) /CSM/SF/SFL3-D/SFL377Q.Seq.d/                         42   0.017
SFK616 (SFK616Q) /CSM/SF/SFK6-A/SFK616Q.Seq.d/                         42   0.017
SFK564 (SFK564Q) /CSM/SF/SFK5-C/SFK564Q.Seq.d/                         42   0.017
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115680|AC115680.2 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence.   396   0.0    10
AC015852|AC015852.2 Homo sapiens chromosome 17 clone CTB-155C15 map 17, LOW-PASS SEQUENCE SAMPLING.    46   3e-04  2
AC018583|AC018583.3 Homo sapiens clone RP11-6F20, WORKING DRAFT SEQUENCE, 10 unordered pieces.    38   8e-04  7
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    34   9e-04  15
AL929351|AL929351.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 1/4.    42   0.004  14
AC012208|AC012208.3 Homo sapiens chromosome 4 clone RP11-375K17 map 4, WORKING DRAFT SEQUENCE, 12 unordered pieces.    36   0.005  13
AA550031|AA550031.1 1110m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falciparum genomic clone 1110m, DNA sequence.    42   0.006  3
AU088266|AU088266.1 Plasmodium falciparum 3D7 cDNA clone from Sugano malaria cDNA library: XPFn6817.    38   0.008  4
AA550521|AA550521.1 1680m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falciparum genomic clone 1680m, DNA sequence.    42   0.008  3
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    36   0.008  13
dna update 2003.12.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000099_3311(CP000099|pid:none) Methanosarcina barkeri str. Fus...    70   2e-10
(O75953) RecName: Full=DnaJ homolog subfamily B member 5; AltNam...    70   2e-10
CR382132_506(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...    70   2e-10
AL355377_7(AL355377|pid:none) Human DNA sequence from clone RP11...    70   2e-10
AL355377_6(AL355377|pid:none) Human DNA sequence from clone RP11...    70   2e-10
AK299647_1(AK299647|pid:none) Homo sapiens cDNA FLJ56830 complet...    70   2e-10
AL355377_8(AL355377|pid:none) Human DNA sequence from clone RP11...    70   2e-10
AF087870_1(AF087870|pid:none) Homo sapiens heat shock protein 40...    70   2e-10
BC166524_1(BC166524|pid:none) Rattus norvegicus DnaJ (Hsp40) hom...    70   2e-10
BC168060_1(BC168060|pid:none) Xenopus tropicalis cDNA clone MGC:...    69   3e-10
protein update 2009. 5.22
PSORT 

 psg: 0.77  gvh: 0.43  alm: 0.12  top: 0.33  tms: 0.20  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 16.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for SFC702 is end
5' end seq. ID SFC702F
5' end seq. 
>SFC702F.Seq
ATATTAAGTTAAAAGCGTGCAAATACAAACCAAACACAAACACAAACACAAATATTCACA
TAAACACTAATACACAAAAATAAATAATAGAAAATAAATAGAAAAATAGTTTTTTGGAAA
ATAAATAATAGAAAATAAATAAAAAAATATTTATACATACATACATACATACAATTCAAA
TAAATAATGAAGTTTGATACAACTAAATATTATCTACTTTTAGAACTACCAGTTGATTGT
TCACAAGATGATATAAAAAGATCATACCGTGCCTTAGCGTTAAGATATCATCCAGATAGA
AATCCAGATCCAACAGCAGCAGAAGCATTTAAAGAAATAGCAGAAGCATATGAAGTATTA
T----------
Length of 5' end seq. 361
3' end seq. ID SFC702Z
3' end seq. 
>SFC702Z.Seq
----------TCAAGAGAACACTATGAAAAACGTTTTTCATCACCAGAACATTTAGATAC
TTGTACAAATTTTGGTTTGGGTCATCCAGGTTTTATTTTACGTAAATTGTTGAGAGATTT
AGTTGCAAGTTGGTTCTTTGTTTTCCTAATGTTAAAATTGGATCATGTAGTTGAATGGAA
TTGGTGGATAAATTCAATTCCTGTCTTTTTTTACATCATTTTCTATTTGGTTTTAATGGC
ATTAGATAATAGTTCAAAAATGAACAATTTATCAATGGATGAAGATGAAAGAGCCTCAAA
TGAAAGTGTTAATAGTTTCTTATATTGTATTTTCATTTTCTTAATGATTCCAGTTATCTT
ATTTATTTCTTTATTAGCTGCTCATATCTCTGCTGATAGATTTGCAATTGCNTAATGTAT
TCATTCCAATTTTTATTGTTTTAGGTCTTTTAACTTGTGCATATTGTATTTTTGCATGTT
GTGCTTTAGCTGCAGCAAAGGGACAAGGAATGGAAGATTTCCCAGGTGGTTCACCAACTC
AAAATATCGCTTCAATCATTAACAGTAGAATGTTAAGACCACAAAAATTCTTGGAAGCTC
AACACTTACCAACAACCAGTACCTCTGTTGGTGTAGAAAATGTTAATTTTACCAAAATAA
AGAGTAAAAAGTTCACATATATATAAAATTT
Length of 3' end seq. 681
Connected seq. ID SFC702P
Connected seq. 
>SFC702P.Seq
ATATTAAGTTAAAAGCGTGCAAATACAAACCAAACACAAACACAAACACAAATATTCACA
TAAACACTAATACACAAAAATAAATAATAGAAAATAAATAGAAAAATAGTTTTTTGGAAA
ATAAATAATAGAAAATAAATAAAAAAATATTTATACATACATACATACATACAATTCAAA
TAAATAATGAAGTTTGATACAACTAAATATTATCTACTTTTAGAACTACCAGTTGATTGT
TCACAAGATGATATAAAAAGATCATACCGTGCCTTAGCGTTAAGATATCATCCAGATAGA
AATCCAGATCCAACAGCAGCAGAAGCATTTAAAGAAATAGCAGAAGCATATGAAGTATTA
T----------TCAAGAGAACACTATGAAAAACGTTTTTCATCACCAGAACATTTAGATA
CTTGTACAAATTTTGGTTTGGGTCATCCAGGTTTTATTTTACGTAAATTGTTGAGAGATT
TAGTTGCAAGTTGGTTCTTTGTTTTCCTAATGTTAAAATTGGATCATGTAGTTGAATGGA
ATTGGTGGATAAATTCAATTCCTGTCTTTTTTTACATCATTTTCTATTTGGTTTTAATGG
CATTAGATAATAGTTCAAAAATGAACAATTTATCAATGGATGAAGATGAAAGAGCCTCAA
ATGAAAGTGTTAATAGTTTCTTATATTGTATTTTCATTTTCTTAATGATTCCAGTTATCT
TATTTATTTCTTTATTAGCTGCTCATATCTCTGCTGATAGATTTGCAATTGCNTAATGTA
TTCATTCCAATTTTTATTGTTTTAGGTCTTTTAACTTGTGCATATTGTATTTTTGCATGT
TGTGCTTTAGCTGCAGCAAAGGGACAAGGAATGGAAGATTTCCCAGGTGGTTCACCAACT
CAAAATATCGCTTCAATCATTAACAGTAGAATGTTAAGACCACAAAAATTCTTGGAAGCT
CAACACTTACCAACAACCAGTACCTCTGTTGGTGTAGAAAATGTTAATTTTACCAAAATA
AAGAGTAAAAAGTTCACATATATATAAAATTT
Length of connected seq. 1042
Full length Seq ID -
Full length Seq. -
Length of full length seq. -