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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFD117
Library SF
(Link to library)
Clone ID SFD117
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID SFD117F
(Link to Original site)
Representative DNA sequence 
>SFD117 (SFD117Q) /CSM/SF/SFD1-A/SFD117Q.Seq.d/
TATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAAATTTGTAAAATCAA
TTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAACCAAAAAAAAAAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ysn*ISIQLKKVKIKFVKSICNKN**fkkkkpkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
yiqikyqyn*kklklnl*nqfvtktsnlkkknqkk---


Frame B:
ifklnintikks*n*ickinl*qklvi*kkktkkk---


Frame C:
ysn*ISIQLKKVKIKFVKSICNKN**fkkkkpkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ139 (SFJ139Q) /CSM/SF/SFJ1-B/SFJ139Q.Seq.d/                        123   6e-28
SFF174 (SFF174Q) /CSM/SF/SFF1-D/SFF174Q.Seq.d/                        123   6e-28
SFD117 (SFD117Q) /CSM/SF/SFD1-A/SFD117Q.Seq.d/                        123   6e-28
SFC855 (SFC855Q) /CSM/SF/SFC8-C/SFC855Q.Seq.d/                        123   6e-28
CHC103 (CHC103Q) /CSM/CH/CHC1-A/CHC103Q.Seq.d/                        123   6e-28
CFI246 (CFI246Q) /CSM/CF/CFI2-B/CFI246Q.Seq.d/                        123   6e-28
CFH105 (CFH105Q) /CSM/CF/CFH1-A/CFH105Q.Seq.d/                        123   6e-28
SFH576 (SFH576Q) /CSM/SF/SFH5-D/SFH576Q.Seq.d/                        121   2e-27
SFF269 (SFF269Q) /CSM/SF/SFF2-C/SFF269Q.Seq.d/                        121   2e-27
CFI396 (CFI396Q) /CSM/CF/CFI3-D/CFI396Q.Seq.d/                        121   2e-27
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence.    80   2e-21  3
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    80   6e-21  2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    80   3e-19  6
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    80   1e-18  2
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    80   7e-12  1
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank.    54   4e-04  1
BX322622|BX322622.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    36   0.020  5
AC019267|AC019267.3 Homo sapiens clone RP11-7M4, LOW-PASS SEQUENCE SAMPLING.    46   0.091  1
BM424783|BM424783.1 IpSpn00680 Spleen cDNA library Ictalurus punctatus cDNA 5', mRNA sequence.    28   0.12   3
BX322575|BX322575.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-283E2.    32   0.17   6
dna update 2003.12.21
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.316    0.123    0.315

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 42,711,671
protein update 2009. 5.23
PSORT -
5' end seq. ID SFD117F
5' end seq. 
>SFD117F.Seq
TATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAAATTTGTAAAATCAA
TTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAACCAAAAAAAAAA----------
Length of 5' end seq. 107
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -