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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFD729
Library SF
(Link to library)
Clone ID SFD729
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16509-1|Contig-U16581-1
Original site URL
Representative seq. ID SFD729P
(Link to Original site)
Representative DNA sequence 
>SFD729 (SFD729Q) /CSM/SF/SFD7-B/SFD729Q.Seq.d/
TTGGCCTACTGGAAAAATGTCAAATAAATAAAAAAAAAAAAAAAAANTAAAAAAAANTTT
ANTAGGTTTTAAAAGGGNTTNGTTTTAATAAAAAAAAAAAAAANCCCCNTTTTTTTNGNG
GNAAAAAAAAANTAAAAANTAAAAAAAAAAAAANNAAAAAAAAANNTTNNNGGNNTTNCC
CGGGGGCNTTNNGNAAAAAAAAAGGGTTTAAAAAAAAANNAAAAATTTTTNAAAANNAAA
AAAAAAANNAAAAAAAAACNTTTTTAANCCNNCNNTTNNNTTTTNGGGGNCTTTNNNAAA
AAAANGNNNNGGGGGNTTTNNCCCCCCTNNNNTNGGNNNNCCNNCCCCNNGNCCNAAAAA
NTTGGGGNCCCCCNAAANGGGNCCCCCANNGNNCCCCGGGGGGAANCCCNNNNANTTNTT
NGGNNCNTTTTTAAANGGNNAANNNNNNTTTTNNNAAAAAAAATTTTTTTAAAAAAAAAA
AAAAAAAGGGNCCCTTNGNCCCCNTNGGGTTTAAAAGGGGCCNATTTTTTAAAAAAAAAA
AAAAAAATTTTTAAAANNNTTTTTTNGGNTTTTNAAAGGGGGNGNTTTTTAAAAAAAAAA
XXXXXXXXXXTACCATGGGNCTTAAAGAAAATAAAAAAGTTTNAAAAAAAAATNAAAAAT
AATNAAAAATNAAAAAAAAAATAAAAAAAAAAACTTTTAAAACTCTCCTTCTACTTTTTG
GTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCTTTGCTTTGCATTACTCTCC
TCAAG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
laywknvk*ikkkkkxkkxfxrf*kgxvlikkkkxpxfxxxkkx*kxkkkkxkkxxxgxx
rgxxxkkkglkkxxkfxkxkkkxkkkxf*XXXXXXGXFXKKXXXGXXPPXXXXXXPXXXK
XGXPXXGXPXXPRGEXXXXXXXXFKXXXXXXXKKIFLKKKKKRXPXXPXGLKGAXFLKKK
KKIFKXXFXXFXRGXFLKKK---

---PWXLKKIKKFXKKXKNNXKXKKK*kkkllklsfyflvllls*c*gvslplcfallss
Translated Amino Acid sequence (All Frames) 
Frame A:
laywknvk*ikkkkkxkkxfxrf*kgxvlikkkkxpxfxxxkkx*kxkkkkxkkxxxgxx
rgxxxkkkglkkxxkfxkxkkkxkkkxf*XXXXXXGXFXKKXXXGXXPPXXXXXXPXXXK
XGXPXXGXPXXPRGEXXXXXXXXFKXXXXXXXKKIFLKKKKKRXPXXPXGLKGAXFLKKK
KKIFKXXFXXFXRGXFLKKK---

---yhgx*rk*ksxkkkxkixknxkknkkknf*nspstfwcfc*anakvslspfalhysp
q

Frame B:
wptgkmsnk*kkkkkxkkxlxgfkrxxf**kkkkxpffxxxkkxkx*kkkxxkkxxxxxp
ggxxxkkrv*kkxknfxkxkkkxkknxfxpxxxfxgxxxkkxxggfxppxxgxpxpxpkx
lgxpxxgppxxpggxpxxxxgxflxgxxxfxxkkff*kkkkkgxlxpxxv*kgpif*kkk
kkflkxffxxxkggxf*kk---

---tmglkenkkvxkknxk*xkxkkkikkktfktllllfgasvklmlrclsppllcitll
k

Frame C:
gllekcqinkkkkkx*kkxx*vlkgxxfnkkkkxpxffxgkkkxkxkkkkxkkkxxxxxp
gaxxkkkgfkkkxkifxxxkkxxkktflxxxxxfxglxxkxxxgxxxplxxxxxpxxxkx
wgppkxxpxxxpggxpxxxxxxf*xxxxxfxkknffkkkkkkgpxxpxgfkrgxffkkkk
knf*xxfxgfxkgxxfkkk---

---PWXLKKIKKFXKKXKNNXKXKKK*kkkllklsfyflvllls*c*gvslplcfallss
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC737 (VSC737Q) /CSM/VS/VSC7-B/VSC737Q.Seq.d/                        182   5e-45
VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/                        182   5e-45
SSM803 (SSM803Q) /CSM/SS/SSM8-A/SSM803Q.Seq.d/                        182   5e-45
SSM728 (SSM728Q) /CSM/SS/SSM7-B/SSM728Q.Seq.d/                        182   5e-45
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/                        182   5e-45
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/                        182   5e-45
SSM269 (SSM269Q) /CSM/SS/SSM2-C/SSM269Q.Seq.d/                        182   5e-45
SSM229 (SSM229Q) /CSM/SS/SSM2-B/SSM229Q.Seq.d/                        182   5e-45
SSM165 (SSM165Q) /CSM/SS/SSM1-C/SSM165Q.Seq.d/                        182   5e-45
SSL845 (SSL845Q) /CSM/SS/SSL8-B/SSL845Q.Seq.d/                        182   5e-45
own update 2004. 8.22
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                    182   3e-44  2
BZ463651|BZ463651.1 BONRK12TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONRK12, DNA sequence.    50   0.047  1
AC093987|AC093987.6 Rattus norvegicus clone CH230-36D18, WORKING DRAFT SEQUENCE, 5 unordered pieces.    42   11     1
AC113975|AC113975.4 Mus musculus clone RP23-140P24, WORKING DRAFT SEQUENCE, 5 ordered pieces.    42   11     1
dna update 2003.12.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AX647645_1(AX647645|pid:none) Sequence 1837 from Patent EP1270724.     45   0.002
BT050756_1(BT050756|pid:none) Medicago truncatula clone MTYF5_F6...    44   0.004
BT051012_1(BT051012|pid:none) Medicago truncatula clone MTYFD_FE...    41   0.036
AY812022_1(AY812022|pid:none) Schistosoma japonicum clone SJCHGC...    41   0.036
AM433463_1(AM433463|pid:none) Vitis vinifera contig VV78X022531....    41   0.048
AM269894_60(AM269894|pid:none) Eimeria tenella chromosome 1, ord...    38   0.40
BC111290_1(BC111290|pid:none) Bos taurus alcohol dehydrogenase 1...    37   0.69
BT050940_1(BT050940|pid:none) Medicago truncatula clone MTYFD_FE...    36   1.2
BT050752_1(BT050752|pid:none) Medicago truncatula clone MTYF5_F6...    36   1.2
BT051163_1(BT051163|pid:none) Medicago truncatula clone MTYFT1G-...    36   1.2
protein update 2009. 1. 7
PSORT 

 psg: 0.76  gvh: 0.40  alm: 0.60  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.42  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: mitochondrial

>> prediction for SFD729 is nuc
5' end seq. ID SFD729F
5' end seq. 
>SFD729F.Seq
TTGGCCTACTGGAAAAATGTCAAATAAATAAAAAAAAAAAAAAAAANTAAAAAAAANTTT
ANTAGGTTTTAAAAGGGNTTNGTTTTAATAAAAAAAAAAAAAANCCCCNTTTTTTTNGNG
GNAAAAAAAAANTAAAAANTAAAAAAAAAAAAANNAAAAAAAAANNTTNNNGGNNTTNCC
CGGGGGCNTTNNGNAAAAAAAAAGGGTTTAAAAAAAAANNAAAAATTTTTNAAAANNAAA
AAAAAAANNAAAAAAAAACNTTTTTAANCCNNCNNTTNNNTTTTNGGGGNCTTTNNNAAA
AAAANGNNNNGGGGGNTTTNNCCCCCCTNNNNTNGGNNNNCCNNCCCCNNGNCCNAAAAA
NTTGGGGNCCCCCNAAANGGGNCCCCCANNGNNCCCCGGGGGGAANCCCNNNNANTTNTT
NGGNNCNTTTTTAAANGGNNAANNNNNNTTTTNNNAAAAAAAATTTTTTTAAAAAAAAAA
AAAAAAAGGGNCCCTTNGNCCCCNTNGGGTTTAAAAGGGGCCNATTTTTTAAAAAAAAAA
AAAAAAATTTTTAAAANNNTTTTTTNGGNTTTTNAAAGGGGGNGNTTTTTAAAAAAAAAA
----------
Length of 5' end seq. 600
3' end seq. ID SFD729Z
3' end seq. 
>SFD729Z.Seq
----------TACCATGGGNCTTAAAGAAAATAAAAAAGTTTNAAAAAAAAATNAAAAAT
AATNAAAAATNAAAAAAAAAATAAAAAAAAAAACTTTTAAAACTCTCCTTCTACTTTTTG
GTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCTTTGCTTTGCATTACTCTCC
TCAAG
Length of 3' end seq. 175
Connected seq. ID SFD729P
Connected seq. 
>SFD729P.Seq
TTGGCCTACTGGAAAAATGTCAAATAAATAAAAAAAAAAAAAAAAANTAAAAAAAANTTT
ANTAGGTTTTAAAAGGGNTTNGTTTTAATAAAAAAAAAAAAAANCCCCNTTTTTTTNGNG
GNAAAAAAAAANTAAAAANTAAAAAAAAAAAAANNAAAAAAAAANNTTNNNGGNNTTNCC
CGGGGGCNTTNNGNAAAAAAAAAGGGTTTAAAAAAAAANNAAAAATTTTTNAAAANNAAA
AAAAAAANNAAAAAAAAACNTTTTTAANCCNNCNNTTNNNTTTTNGGGGNCTTTNNNAAA
AAAANGNNNNGGGGGNTTTNNCCCCCCTNNNNTNGGNNNNCCNNCCCCNNGNCCNAAAAA
NTTGGGGNCCCCCNAAANGGGNCCCCCANNGNNCCCCGGGGGGAANCCCNNNNANTTNTT
NGGNNCNTTTTTAAANGGNNAANNNNNNTTTTNNNAAAAAAAATTTTTTTAAAAAAAAAA
AAAAAAAGGGNCCCTTNGNCCCCNTNGGGTTTAAAAGGGGCCNATTTTTTAAAAAAAAAA
AAAAAAATTTTTAAAANNNTTTTTTNGGNTTTTNAAAGGGGGNGNTTTTTAAAAAAAAAA
----------TACCATGGGNCTTAAAGAAAATAAAAAAGTTTNAAAAAAAAATNAAAAAT
AATNAAAAATNAAAAAAAAAATAAAAAAAAAAACTTTTAAAACTCTCCTTCTACTTTTTG
GTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCTTTGCTTTGCATTACTCTCC
TCAAG
Length of connected seq. 775
Full length Seq ID -
Full length Seq. -
Length of full length seq. -