SFD826 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFD826
Library	SF (Link to library)
Clone ID	SFD826 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U03497-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFD8-B/SFD826Q.Seq.d/
Representative seq. ID	SFD826P (Link to Original site)
Representative DNA sequence	>SFD826 (SFD826Q) /CSM/SF/SFD8-B/SFD826Q.Seq.d/ AATCATCTTTTAATCATAATAAAAAAATGTCATCTATACATATAATTTATAAAACTGGTA AAACTACAGTACCTGTCATTGCATCAACTGTAATGATGGAGGTATTAAAAAAAGCTTGCC AATATTTTAAAATTGATGATTCACGTTTCCAATTAATGTATGGATCAACATATGTTAATT TATCATTACCATTTAGATTATCAGGTATACCAAATTTAAGTAGAGTTACTATAATGGAAA AAAAAGGAGCCTCAATCTCAACAGTAAAGATTGCAATTCAAATGGATGATGGTAAAAGAT TTCAATCAAATTTTAAAACAAGTTCAACACTTTGGGATATTTTATTAACATTTGAAACCG AACAAAACTTATCCTTAACTAAAAGATTCAATGATGTTAATCAATACATTGAACCAGTTG TAACAATTTTAAATAGAGAGATCTCAACAATTGAATCACTTCAAAAATCATCTTTAGCAT CAATAAATGTTAATGAAGCATCATTAATTAAATTAACTTTTAAACAAACTGATAGAACTA ATGAAGAGGTATTACCAATTATTGTATCATATCAATCACCATCAACACCAACAGAATCAC CAACAACAACAACAACTACTACTACTACAACTACTXXXXXXXXXXANCATTTGAANCCGA NCAAAACTTATCCTTANNTAAAAGATTCAATGATGTTAATCAATACATTGANCCAGTTGT ANCAATTTTAAATAGAGAGATCTCANCAATTGAATCACTTCAAAAATCATCTTTAGCATC AATAAATGTTAATGAAGCATCATTAATTAAATTAACTTTTAAACAAACTGATAGAACTAA TGAAGAGGTATTACCAATTATTGTATCATATCAATCACCATCAACACCAACAGAATTCAC CAACAACAACAACAACTACTACTACTACAACTACTACCAATAATACAACTAAAGAAGAAT CACCAAAAACAACAAATTCACCAACCAATAGCGAATCCTCAACTAAATCCCAAAACAGTA GTGGTTCACAACAATCTCCAATAATTATTTCTCCACCAACACAACAATCAACAAGTTCTG ATGTTTCAACTCCAACTATGGACATTGATTCACCATTAGTTAAAAATGTAGAAAAATCAC CAATATCTGATTTAGGATTAAACCCATCATCTAATATTCCATTACCAGATAAAACATATA ATAATGAAACTACTACTACCACAACAACAACATCAAATAATGATGTTCAAGTTTCAACAC CACCAAAAATTGCTACAAGGATCATAAAGATAGAGAACTTTTAGTTTATACACCATCAAA TAATCAAGTNATCCAAAATCAATTAG
sequence update	2001. 6. 1
Translated Amino Acid sequence	SSFNHNKKMSSIHIIYKTGKTTVPVIASTVMMEVLKKACQYFKIDDSRFQLMYGSTYVNL SLPFRLSGIPNLSRVTIMEKKGASISTVKIAIQMDDGKRFQSNFKTSSTLWDILLTFETE QNLSLTKRFNDVNQYIEPVVTILNREISTIESLQKSSLASINVNEASLIKLTFKQTDRTN EEVLPIIVSYQSPSTPTESPTTTTTTTTTTT--- ---XFEXXQNLSLXKRFNDVNQYIXPVVXILNREISXIESLQKSSLASINVNEASLIKLT FKQTDRTNEEVLPIIVSYQSPSTPTEFTNNNNNYYYYNYYQynrritknnkftnqri lnipkqwfttisnnyfstnttinkfcfnsnyghftiskcrkitnifrikpiiy sitrninyyyhnnnikcssfnttkncykdhkdrellvytpsnnqviqnql
Translated Amino Acid sequence (All Frames)	Frame A: nhlliiikkchlyifiklvklqylslhqlwrykklanilklmihvsncmdqhmli yhyhldyqvyqivellwkkkepqsqqrlqfkwmmvkdfnqilkqvqhfgifyhlkp nktyplkdsmmlintlnqlqfiersqqlnhfknhlhqmlmkhhlnllnkliel mkryyqllyhinhhqhqqnhqqqqqllllql--- ---xixrxklilxkiqcsihxscxnfkrdlxnitskiifsinkcsiinin ftnnrgitnyciisitintnrihqqqqqllllqllpiiqlkknhqkqqihqpian pqlnpktvvvhnnlqlflhqhnnqqvlmfqlqlwtlihhlkmknhqylidthhli fhyqikhiimklllpqqqhqimmfkfqhhqkllqgsrrtfslytikssxpksi Frame B: iifs*knviytynlnwnystchcincndggikkslpifn*ftfpinvwinicf iitiiirytkfksyyngkkrslnlnskdcnsngwkisikfnkfntlgyfininr tklilnkiqcsihtscnnfkrdlnnitskiifsinkc*siininftnn rgitnyciisitintnritnnnnnyyyyny--- ---XFEXXQNLSLXKRFNDVNQYIXPVVXILNREISXIESLQKSSLASINVNEASLIKLT FKQTDRTNEEVLPIIVSYQSPSTPTEFTNNNNNYYYYNYYQynrritknnkftnqri lnipkqwfttisnnyfstnttinkfcfnsnyghftiskcrkitnifrikpiiy sitrni*nyyyhnnnikcssfnttkncykdhkdrellvytpsnnqviqnql Frame C: SSFNHNKKMSSIHIIYKTGKTTVPVIASTVMMEVLKKACQYFKIDDSRFQLMYGSTYVNL SLPFRLSGIPNLSRVTIMEKKGASISTVKIAIQMDDGKRFQSNFKTSSTLWDILLTFETE QNLSLTKRFNDVNQYIEPVVTILNREISTIESLQKSSLASINVNEASLIKLTFKQTDRTN EEVLPIIVSYQSPSTPTESPTTTTTTTTTTT--- ---hlxpxktypxxkdsmmlintlxqlxqfiersxqlnhfknhlhqmlmkhhlnl lnklielmkryyqllyhinhhqhqqnspttttttttttttnnttkeespkttnsptnses stksqnssgsqqspiiispptqqstssdvstptmdidsplvknvekspisdlglnpssni plpdktynnettttttttsnndvqvstppkiatriikienffihhqiikxskin*
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SFD826 (SFD826Q) /CSM/SF/SFD8-B/SFD826Q.Seq.d/ 1059 0.0 VFE408 (VFE408Q) /CSM/VF/VFE4-A/VFE408Q.Seq.d/ 1039 0.0 CHE231 (CHE231Q) /CSM/CH/CHE2-B/CHE231Q.Seq.d/ 56 1e-06 SFG616 (SFG616Q) /CSM/SF/SFG6-A/SFG616Q.Seq.d/ 48 4e-04 VFK502 (VFK502Q) /CSM/VF/VFK5-A/VFK502Q.Seq.d/ 46 0.001 SFJ895 (SFJ895Q) /CSM/SF/SFJ8-D/SFJ895Q.Seq.d/ 46 0.001 AFD123 (AFD123Q) /CSM/AF/AFD1-A/AFD123Q.Seq.d/ 46 0.001 VHP815 (VHP815Q) /CSM/VH/VHP8-A/VHP815Q.Seq.d/ 44 0.006 VHC527 (VHC527Q) /CSM/VH/VHC5-B/VHC527Q.Seq.d/ 44 0.006 VHA256 (VHA256Q) /CSM/VH/VHA2-C/VHA256Q.Seq.d/ 44 0.006
own update	2002.11.30
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116956\|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 38 4e-08 18 AC116988\|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 42 5e-08 21 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 36 3e-07 21 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 36 2e-06 24 AE014852\|AE014852.2 Plasmodium falciparum 3D7 chromosome 12, section 9 of 9 of the complete sequence. 34 3e-06 17 AC115598\|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. 38 3e-06 18 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 42 6e-06 26 AP004172\|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5. 32 7e-06 18 AC115577\|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 36 2e-05 17 AF063866\|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 42 3e-05 16
dna update	2003.12.23
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value CU633438_761(CU633438\|pid:none) Podospora anserina genomic DNA c... 84 1e-14 BC162026_1(BC162026\|pid:none) Rattus norvegicus alveolar soft pa... 79 3e-13 (Q8VBT9) RecName: Full=Tether containing UBX domain for GLUT4; A... 77 1e-12 BC142388_1(BC142388\|pid:none) Bos taurus alveolar soft part sarc... 71 7e-11 AM270071_2(AM270071\|pid:none) Aspergillus niger contig An04c0100... 70 2e-10 (Q9BZE9) RecName: Full=Tether containing UBX domain for GLUT4; A... 65 5e-09 AK290624_1(AK290624\|pid:none) Homo sapiens cDNA FLJ76117 complet... 65 5e-09 AK057403_1(AK057403\|pid:none) Homo sapiens cDNA FLJ32841 fis, cl... 65 5e-09 AE014297_726(AE014297\|pid:none) Drosophila melanogaster chromoso... 62 5e-08 AY815587_1(AY815587\|pid:none) Schistosoma japonicum SJCHGC09548 ... 61 1e-07
protein update	2009. 5.23
PSORT	psg: 0.86 gvh: 0.25 alm: 0.41 top: 0.67 tms: 0.00 mit: 0.35 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: nuclear 32.0 %: cytoplasmic 12.0 %: mitochondrial 4.0 %: endoplasmic reticulum >> prediction for SFD826 is nuc
5' end seq. ID	SFD826F
5' end seq.	>SFD826F.Seq AATCATCTTTTAATCATAATAAAAAAATGTCATCTATACATATAATTTATAAAACTGGTA AAACTACAGTACCTGTCATTGCATCAACTGTAATGATGGAGGTATTAAAAAAAGCTTGCC AATATTTTAAAATTGATGATTCACGTTTCCAATTAATGTATGGATCAACATATGTTAATT TATCATTACCATTTAGATTATCAGGTATACCAAATTTAAGTAGAGTTACTATAATGGAAA AAAAAGGAGCCTCAATCTCAACAGTAAAGATTGCAATTCAAATGGATGATGGTAAAAGAT TTCAATCAAATTTTAAAACAAGTTCAACACTTTGGGATATTTTATTAACATTTGAAACCG AACAAAACTTATCCTTAACTAAAAGATTCAATGATGTTAATCAATACATTGAACCAGTTG TAACAATTTTAAATAGAGAGATCTCAACAATTGAATCACTTCAAAAATCATCTTTAGCAT CAATAAATGTTAATGAAGCATCATTAATTAAATTAACTTTTAAACAAACTGATAGAACTA ATGAAGAGGTATTACCAATTATTGTATCATATCAATCACCATCAACACCAACAGAATCAC CAACAACAACAACAACTACTACTACTACAACTACT----------
Length of 5' end seq.	635
3' end seq. ID	SFD826Z
3' end seq.	>SFD826Z.Seq ----------ANCATTTGAANCCGANCAAAACTTATCCTTANNTAAAAGATTCAATGATG TTAATCAATACATTGANCCAGTTGTANCAATTTTAAATAGAGAGATCTCANCAATTGAAT CACTTCAAAAATCATCTTTAGCATCAATAAATGTTAATGAAGCATCATTAATTAAATTAA CTTTTAAACAAACTGATAGAACTAATGAAGAGGTATTACCAATTATTGTATCATATCAAT CACCATCAACACCAACAGAATTCACCAACAACAACAACAACTACTACTACTACAACTACT ACCAATAATACAACTAAAGAAGAATCACCAAAAACAACAAATTCACCAACCAATAGCGAA TCCTCAACTAAATCCCAAAACAGTAGTGGTTCACAACAATCTCCAATAATTATTTCTCCA CCAACACAACAATCAACAAGTTCTGATGTTTCAACTCCAACTATGGACATTGATTCACCA TTAGTTAAAAATGTAGAAAAATCACCAATATCTGATTTAGGATTAAACCCATCATCTAAT ATTCCATTACCAGATAAAACATATAATAATGAAACTACTACTACCACAACAACAACATCA AATAATGATGTTCAAGTTTCAACACCACCAAAAATTGCTACAAGGATCATAAAGATAGAG AACTTTTAGTTTATACACCATCAAATAATCAAGTNATCCAAAATCAATTAG
Length of 3' end seq.	701
Connected seq. ID	SFD826P
Connected seq.	>SFD826P.Seq AATCATCTTTTAATCATAATAAAAAAATGTCATCTATACATATAATTTATAAAACTGGTA AAACTACAGTACCTGTCATTGCATCAACTGTAATGATGGAGGTATTAAAAAAAGCTTGCC AATATTTTAAAATTGATGATTCACGTTTCCAATTAATGTATGGATCAACATATGTTAATT TATCATTACCATTTAGATTATCAGGTATACCAAATTTAAGTAGAGTTACTATAATGGAAA AAAAAGGAGCCTCAATCTCAACAGTAAAGATTGCAATTCAAATGGATGATGGTAAAAGAT TTCAATCAAATTTTAAAACAAGTTCAACACTTTGGGATATTTTATTAACATTTGAAACCG AACAAAACTTATCCTTAACTAAAAGATTCAATGATGTTAATCAATACATTGAACCAGTTG TAACAATTTTAAATAGAGAGATCTCAACAATTGAATCACTTCAAAAATCATCTTTAGCAT CAATAAATGTTAATGAAGCATCATTAATTAAATTAACTTTTAAACAAACTGATAGAACTA ATGAAGAGGTATTACCAATTATTGTATCATATCAATCACCATCAACACCAACAGAATCAC CAACAACAACAACAACTACTACTACTACAACTACT----------ANCATTTGAANCCGA NCAAAACTTATCCTTANNTAAAAGATTCAATGATGTTAATCAATACATTGANCCAGTTGT ANCAATTTTAAATAGAGAGATCTCANCAATTGAATCACTTCAAAAATCATCTTTAGCATC AATAAATGTTAATGAAGCATCATTAATTAAATTAACTTTTAAACAAACTGATAGAACTAA TGAAGAGGTATTACCAATTATTGTATCATATCAATCACCATCAACACCAACAGAATTCAC CAACAACAACAACAACTACTACTACTACAACTACTACCAATAATACAACTAAAGAAGAAT CACCAAAAACAACAAATTCACCAACCAATAGCGAATCCTCAACTAAATCCCAAAACAGTA GTGGTTCACAACAATCTCCAATAATTATTTCTCCACCAACACAACAATCAACAAGTTCTG ATGTTTCAACTCCAACTATGGACATTGATTCACCATTAGTTAAAAATGTAGAAAAATCAC CAATATCTGATTTAGGATTAAACCCATCATCTAATATTCCATTACCAGATAAAACATATA ATAATGAAACTACTACTACCACAACAACAACATCAAATAATGATGTTCAAGTTTCAACAC CACCAAAAATTGCTACAAGGATCATAAAGATAGAGAACTTTTAGTTTATACACCATCAAA TAATCAAGTNATCCAAAATCAATTAG
Length of connected seq.	1336
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas