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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFE109
Library SF
(Link to library)
Clone ID SFE109
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10771-1
Original site URL
Representative seq. ID SFE109P
(Link to Original site)
Representative DNA sequence 
>SFE109 (SFE109Q) /CSM/SF/SFE1-A/SFE109Q.Seq.d/
CAGAGTTAAATTACAAATTCCACTTCACACTCAATACCACACAAATAGAAATTTAAATAA
ATAAAAATTTTTTATTATTTTTATTTTAATTTTTTTTTTATTTTCAAATTTAAATTCAAC
TCTGTTTCATATTAAAATTATTATTATTACCAACCATCATTAATAAATAAATAAATAAAA
TTTTTTTAAAAAAAAAAXXXXXXXXXXGTCACCACTTCTCAATGTGAAAGTTTAATCCAA
GCAGGTGTAGATGGTCTTAGAGTTGGTATGGGTGTTGGTTCCATTTGCACCACTCAAGAG
GTTATGGCATGTGGTCGTCCTCAAGCCACCGCCGTATTCAAATGTGCCCTCTACTCTAGT
CAATACAATGTACCAATCATTGCCGACGGTGGTATTCGTACCATCGGTCATATCATTAAA
GGTCTCTCATTGGGCGCTTCCTCTGTAATGATGGGCAGTATGTTGGCCGGTACCGAAGAG
GCTCCAGGTGATTATTTCTACAAGGATGGTATGCGTTTAAAGAAATATCGTGGTATGGGT
TCATTGGAAGCAATGGTTAAAGGTGGTGATCAAAGATACTTTAGTGAAACCGATAAAATT
AAAGTCGCTCAAGGTGTTAGTGGTAGTGTTGTAGATAAAGGTTCCGTAAAGAAATTCGTC
CCATATCTCATTCAAGGTATTAAACATGGTCTTCAAGATCTTGGTTGTAATTCTGTCACA
AATTTACGTGAAAGTGTTTATGGTGGTAAAGTTAGATTCGAAGTTAGAACCGCTGCCGCT
CAAGTTGAAGGCTCTGTACATAGTTTATTCTCATATAAAAACATTTTATTTAAATTA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
elnykfhftlnttqiei*inknfllflf*fffyfqi*iqlcfilkllllptiink*INKI
FLKKK---

---VTTSQCESLIQAGVDGLRVGMGVGSICTTQEVMACGRPQATAVFKCALYSSQYNVPI
IADGGIRTIGHIIKGLSLGASSVMMGSMLAGTEEAPGDYFYKDGMRLKKYRGMGSLEAMV
KGGDQRYFSETDKIKVAQGVSGSVVDKGSVKKFVPYLIQGIKHGLQDLGCNSVTNLRESV
YGGKVRFEVRTAAAQVEGSVHSLFSYKNILFKL
Translated Amino Acid sequence (All Frames) 
Frame A:
qs*itnstshsiphk*kfk*ikifyyfyfnfffifkfkfnsvsy*nyyyyqpslink*ik
ff*kk---

---VTTSQCESLIQAGVDGLRVGMGVGSICTTQEVMACGRPQATAVFKCALYSSQYNVPI
IADGGIRTIGHIIKGLSLGASSVMMGSMLAGTEEAPGDYFYKDGMRLKKYRGMGSLEAMV
KGGDQRYFSETDKIKVAQGVSGSVVDKGSVKKFVPYLIQGIKHGLQDLGCNSVTNLRESV
YGGKVRFEVRTAAAQVEGSVHSLFSYKNILFKL

Frame B:
rvklqiplhtqyhtnrnlnk*kffiifilifflfsnlnstlfhikiiiitnhh**ink*n
ffkkk---

---spllnvkv*skqv*mvlelvwvlvpfaplkrlwhvvvlkpppysnvpstlvntmyqs
lptvvfvpsvislkvshwalpl**wavcwpvpkrlqviistrmvcv*rnivvwvhwkqwl
kvvikdtlvkpiklkslkvlvvvl*ikvp*rnsshisfkvlnmvfkilvvilsqiyvkvf
mvvkldskleplplklkalyivyshiktfyln

Frame C:
elnykfhftlnttqiei*inknfllflf*fffyfqi*iqlcfilkllllptiink*INKI
FLKKK---

---hhfsm*kfnpsrcrws*swygcwfhlhhsrgygmwsssshrriqmcpll*siqctnh
crrwysyhrsyh*rsligrflcndgqyvgryrrgsr*lflqgwyafkeiswygfigsng*
rw*skil**nr*n*srsrc*w*ccr*rfrkeirpishsry*twssrswl*fchkft*kcl
ww*s*irs*nrcrss*rlct*fili*khfi*i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFE109 (SFE109Q) /CSM/SF/SFE1-A/SFE109Q.Seq.d/                       1249   0.0
AFD295 (AFD295Q) /CSM/AF/AFD2-D/AFD295Q.Seq.d/                       1223   0.0
AFD809 (AFD809Q) /CSM/AF/AFD8-A/AFD809Q.Seq.d/                       1187   0.0
AFN176 (AFN176Q) /CSM/AF/AFN1-D/AFN176Q.Seq.d/                       1170   0.0
SLB515 (SLB515Q) /CSM/SL/SLB5-A/SLB515Q.Seq.d/                       1162   0.0
SFF770 (SFF770Q) /CSM/SF/SFF7-C/SFF770Q.Seq.d/                       1146   0.0
AFM653 (AFM653Q) /CSM/AF/AFM6-C/AFM653Q.Seq.d/                       1142   0.0
AFO154 (AFO154Q) /CSM/AF/AFO1-C/AFO154Q.Seq.d/                       1138   0.0
CHD170 (CHD170Q) /CSM/CH/CHD1-C/CHD170Q.Seq.d/                       1136   0.0
AFM510 (AFM510Q) /CSM/AF/AFM5-A/AFM510Q.Seq.d/                       1086   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

Z97211|Z97211.2 S.pombe chromosome II cosmid c2F12.                70   9e-13  6
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    44   1e-12  10
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    42   3e-11  9
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    44   6e-11  8
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    42   2e-10  10
AJ011856|AJ011856.1 Saccharomyces cerevisiae complete mitochondrial genome.    42   2e-09  8
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    40   2e-09  11
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    42   5e-09  9
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   7e-09  10
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    42   7e-09  9
dna update 2003.12.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ851396_1(AJ851396|pid:none) Gallus gallus mRNA for hypothetica...   256   6e-67
AK054640_1(AK054640|pid:none) Homo sapiens cDNA FLJ30078 fis, cl...   255   1e-66
AK054667_1(AK054667|pid:none) Homo sapiens cDNA FLJ30105 fis, cl...   255   1e-66
AK122994_1(AK122994|pid:none) Homo sapiens cDNA FLJ16764 fis, cl...   255   1e-66
AK131294_1(AK131294|pid:none) Homo sapiens cDNA FLJ16255 fis, cl...   255   1e-66
AB170296_1(AB170296|pid:none) Macaca fascicularis brain cDNA clo...   255   1e-66
(P20839) RecName: Full=Inosine-5'-monophosphate dehydrogenase 1;...   255   1e-66
A35566(A35566)IMP dehydrogenase (EC 1.1.1.205) I - human              255   1e-66
AK171139_1(AK171139|pid:none) Mus musculus NOD-derived CD11c +ve...   255   1e-66
CR382331_3(CR382331|pid:none) Zebrafish DNA sequence from clone ...   254   2e-66
protein update 2009. 5.23
PSORT 

 psg: 0.71  gvh: 0.46  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.40  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 24.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SFE109 is mit
5' end seq. ID SFE109F
5' end seq. 
>SFE109F.Seq
CAGAGTTAAATTACAAATTCCACTTCACACTCAATACCACACAAATAGAAATTTAAATAA
ATAAAAATTTTTTATTATTTTTATTTTAATTTTTTTTTTATTTTCAAATTTAAATTCAAC
TCTGTTTCATATTAAAATTATTATTATTACCAACCATCATTAATAAATAAATAAATAAAA
TTTTTTTAAAAAAAAAA----------
Length of 5' end seq. 197
3' end seq. ID SFE109Z
3' end seq. 
>SFE109Z.Seq
----------GTCACCACTTCTCAATGTGAAAGTTTAATCCAAGCAGGTGTAGATGGTCT
TAGAGTTGGTATGGGTGTTGGTTCCATTTGCACCACTCAAGAGGTTATGGCATGTGGTCG
TCCTCAAGCCACCGCCGTATTCAAATGTGCCCTCTACTCTAGTCAATACAATGTACCAAT
CATTGCCGACGGTGGTATTCGTACCATCGGTCATATCATTAAAGGTCTCTCATTGGGCGC
TTCCTCTGTAATGATGGGCAGTATGTTGGCCGGTACCGAAGAGGCTCCAGGTGATTATTT
CTACAAGGATGGTATGCGTTTAAAGAAATATCGTGGTATGGGTTCATTGGAAGCAATGGT
TAAAGGTGGTGATCAAAGATACTTTAGTGAAACCGATAAAATTAAAGTCGCTCAAGGTGT
TAGTGGTAGTGTTGTAGATAAAGGTTCCGTAAAGAAATTCGTCCCATATCTCATTCAAGG
TATTAAACATGGTCTTCAAGATCTTGGTTGTAATTCTGTCACAAATTTACGTGAAAGTGT
TTATGGTGGTAAAGTTAGATTCGAAGTTAGAACCGCTGCCGCTCAAGTTGAAGGCTCTGT
ACATAGTTTATTCTCATATAAAAACATTTTATTTAAATTA
Length of 3' end seq. 630
Connected seq. ID SFE109P
Connected seq. 
>SFE109P.Seq
CAGAGTTAAATTACAAATTCCACTTCACACTCAATACCACACAAATAGAAATTTAAATAA
ATAAAAATTTTTTATTATTTTTATTTTAATTTTTTTTTTATTTTCAAATTTAAATTCAAC
TCTGTTTCATATTAAAATTATTATTATTACCAACCATCATTAATAAATAAATAAATAAAA
TTTTTTTAAAAAAAAAA----------GTCACCACTTCTCAATGTGAAAGTTTAATCCAA
GCAGGTGTAGATGGTCTTAGAGTTGGTATGGGTGTTGGTTCCATTTGCACCACTCAAGAG
GTTATGGCATGTGGTCGTCCTCAAGCCACCGCCGTATTCAAATGTGCCCTCTACTCTAGT
CAATACAATGTACCAATCATTGCCGACGGTGGTATTCGTACCATCGGTCATATCATTAAA
GGTCTCTCATTGGGCGCTTCCTCTGTAATGATGGGCAGTATGTTGGCCGGTACCGAAGAG
GCTCCAGGTGATTATTTCTACAAGGATGGTATGCGTTTAAAGAAATATCGTGGTATGGGT
TCATTGGAAGCAATGGTTAAAGGTGGTGATCAAAGATACTTTAGTGAAACCGATAAAATT
AAAGTCGCTCAAGGTGTTAGTGGTAGTGTTGTAGATAAAGGTTCCGTAAAGAAATTCGTC
CCATATCTCATTCAAGGTATTAAACATGGTCTTCAAGATCTTGGTTGTAATTCTGTCACA
AATTTACGTGAAAGTGTTTATGGTGGTAAAGTTAGATTCGAAGTTAGAACCGCTGCCGCT
CAAGTTGAAGGCTCTGTACATAGTTTATTCTCATATAAAAACATTTTATTTAAATTA
Length of connected seq. 827
Full length Seq ID -
Full length Seq. -
Length of full length seq. -