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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFH765
Library SF
(Link to library)
Clone ID SFH765
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15579-1
Original site URL
Representative seq. ID SFH765P
(Link to Original site)
Representative DNA sequence 
>SFH765 (SFH765Q) /CSM/SF/SFH7-C/SFH765Q.Seq.d/
ACTGTTGGCCTACTGGNAATTTATTTGTTTCATATGAACATTTAATAAATAAAACACAAT
AAAAATCAATATTATTTATATATTTATAGTAACATTATATGAATATTTAAAAATTGGAAA
ACATTTTTTAAAAATTGGAAAACATTATTAAAAAAAGAAATAAATTGATTTTTAATTATA
AAAAAAAAAXXXXXXXXXXANNANAANNANNNANGNNNNNNTNNTNNNNGTNANNNNNNN
ATANGNTGNNNNNATNNTNAGNNTNANNNNTGNNANGNANGNAANNNNGTANANNNNTGN
ANNNNNAATNATNTATGCTTNNCAAGGNAATGTAATNCAANAGGNNANNCNCNNTGTTTA
ATNNNNCNTATTNATTGNNCNAGCNNTGATCCATGCATTTTTTCATANTGTGAAAATGGT
GTATGTATTNCAACANACATTTGTACTCCAACTCCATCTGTAACTCCAACTGTTACCCCA
NCTGTTACTCCAACTGTTACCCCAACTGTTACACCAACCGTTACTCCAACCGTTACCCCA
ACTCCAACTATAACTGC
sequence update 2001.11.22
Translated Amino Acid sequence 
cwptgnlfvsyehlinktq*ksilfiyl**hymni*klenif*KLENIIKKRNKLIFNYK
KK---

---XXXXXXXXXXXXXIXXXXXXXXXXXXXXXVXXXXXNXXCXXRXCNXXGXXXCLXXXI
XXXSXDPCIFSXCENGVCIXTXICTPTPSVTPTVTPXVTPTVTPTVTPTVTPTVTPTPTI
T
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxiylfhmni**ikhnknqyylyiysnii*ifknwktffknwktllkkein*flii
kkk---

---xxxxxxxxxxvxxxxxxxxxxxxxxxxxxxxxxxxxxxyaxqgnvxqxxxxxv*xxx
xixxaxihaffhxvkmvyvxqxtfvlqlhl*lqllpxlllqllpqllhqpllqplpqlql
*l

Frame B:
llaywxficfi*tfnk*ntikiniiyifivtlyeylkigkhflkigkhy*kkk*idf*l*
kk---

---xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxmlxkxm*xxrxxxxfnxxy
xlxxx*smhffix*kwcmyxnxhlysnsicnsncypxcysncypncytnrysnrypnsny
nc

Frame C:
cwptgnlfvsyehlinktq*ksilfiyl**hymni*klenif*KLENIIKKRNKLIFNYK
KK---

---XXXXXXXXXXXXXIXXXXXXXXXXXXXXXVXXXXXNXXCXXRXCNXXGXXXCLXXXI
XXXSXDPCIFSXCENGVCIXTXICTPTPSVTPTVTPXVTPTVTPTVTPTVTPTVTPTPTI
T
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFH765 (SFH765Q) /CSM/SF/SFH7-C/SFH765Q.Seq.d/                        325   4e-88
CFB308 (CFB308Q) /CSM/CF/CFB3-A/CFB308Q.Seq.d/                        325   4e-88
SSH875 (SSH875Q) /CSM/SS/SSH8-D/SSH875Q.Seq.d/                        313   2e-84
SLH793 (SLH793Q) /CSM/SL/SLH7-D/SLH793Q.Seq.d/                        313   2e-84
SLA680 (SLA680Q) /CSM/SL/SLA6-D/SLA680Q.Seq.d/                        313   2e-84
SFI265 (SFI265Q) /CSM/SF/SFI2-C/SFI265Q.Seq.d/                        313   2e-84
SFC534 (SFC534Q) /CSM/SF/SFC5-B/SFC534Q.Seq.d/                        313   2e-84
SFB163 (SFB163Q) /CSM/SF/SFB1-C/SFB163Q.Seq.d/                        313   2e-84
CHN355 (CHN355Q) /CSM/CH/CHN3-C/CHN355Q.Seq.d/                        313   2e-84
CHH341 (CHH341Q) /CSM/CH/CHH3-B/CHH341Q.Seq.d/                        313   2e-84
own update 2002.12. 2
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CK261949|CK261949.1 EST708027 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POABD21 5' end, mRNA sequence.    40   3e-06  3
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    42   3e-04  7
CE707845|CE707845.1 tigr-gss-dog-17000369256437 Dog Library Canis familiaris genomic, genomic survey sequence.    40   4e-04  2
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence.    38   0.002  6
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           38   0.003  9
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   0.003  12
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    42   0.014  8
CF342629|CF342629.1 AGENCOURT_15224176 NICHD_XGC_Swb1 Silurana tropicalis cDNA clone IMAGE:7000111 5', mRNA sequence.    40   0.016  2
CF342630|CF342630.1 AGENCOURT_15224162 NICHD_XGC_Swb1 Silurana tropicalis cDNA clone IMAGE:7000111 5', mRNA sequence.    40   0.017  2
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   0.018  9
dna update 2003.12.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                 58   1e-07
protein update 2009. 1.11
PSORT 

 psg: 0.52  gvh: 0.49  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.11
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SFH765 is cyt
5' end seq. ID SFH765F
5' end seq. 
>SFH765F.Seq
ACTGTTGGCCTACTGGNAATTTATTTGTTTCATATGAACATTTAATAAATAAAACACAAT
AAAAATCAATATTATTTATATATTTATAGTAACATTATATGAATATTTAAAAATTGGAAA
ACATTTTTTAAAAATTGGAAAACATTATTAAAAAAAGAAATAAATTGATTTTTAATTATA
AAAAAAAAA----------
Length of 5' end seq. 189
3' end seq. ID SFH765Z
3' end seq. 
>SFH765Z.Seq
NNNNNNNNNNANNANAANNANNNANGNNNNNNTNNTNNNNGTNANNNNNNNATANGNTGN
NNNNATNNTNAGNNTNANNNNTGNNANGNANGNAANNNNGTANANNNNTGNANNNNNAAT
NATNTATGCTTNNCAAGGNAATGTAATNCAANAGGNNANNCNCNNTGTTTAATNNNNCNT
ATTNATTGNNCNAGCNNTGATCCATGCATTTTTTCATANTGTGAAAATGGTGTATGTATT
NCAACANACATTTGTACTCCAACTCCATCTGTAACTCCAACTGTTACCCCANCTGTTACT
CCAACTGTTACCCCAACTGTTACACCAACCGTTACTCCAACCGTTACCCCAACTCCAACT
ATAACTGC
Length of 3' end seq. 368
Connected seq. ID SFH765P
Connected seq. 
>SFH765P.Seq
ACTGTTGGCCTACTGGNAATTTATTTGTTTCATATGAACATTTAATAAATAAAACACAAT
AAAAATCAATATTATTTATATATTTATAGTAACATTATATGAATATTTAAAAATTGGAAA
ACATTTTTTAAAAATTGGAAAACATTATTAAAAAAAGAAATAAATTGATTTTTAATTATA
AAAAAAAAA----------ANNANAANNANNNANGNNNNNNTNNTNNNNGTNANNNNNNN
ATANGNTGNNNNNATNNTNAGNNTNANNNNTGNNANGNANGNAANNNNGTANANNNNTGN
ANNNNNAATNATNTATGCTTNNCAAGGNAATGTAATNCAANAGGNNANNCNCNNTGTTTA
ATNNNNCNTATTNATTGNNCNAGCNNTGATCCATGCATTTTTTCATANTGTGAAAATGGT
GTATGTATTNCAACANACATTTGTACTCCAACTCCATCTGTAACTCCAACTGTTACCCCA
NCTGTTACTCCAACTGTTACCCCAACTGTTACACCAACCGTTACTCCAACCGTTACCCCA
ACTCCAACTATAACTGC
Length of connected seq. 547
Full length Seq ID -
Full length Seq. -
Length of full length seq. -