>SHH233 (SHH233Q) /CSM/SH/SHH2-B/SHH233Q.Seq.d/
XXXXXXXXXXTATCCAAAAGATATATGTTCAAAAGCATTAGCTGAATCATTTAATACTCC
ATTCCCATTTGAGGATGAAAATGCAAGAATCAATCATAATTTAGTAGATTTATCAAGCAT
ATCACCAACTCTTAAATTTGATATTAAATATGCAACCACTGATAACTTTACAGGTATTCA
ACTTTATAAACAAGCAAAAGCATTTTTAAATAAAGATGCTGCTAAATGTTTATTATCAGC
TCATAATTGGTTAGTAGAGAATTGGAATGTTGGTATTATAGTTTTCGATTCCTATAGACC
ATGGAATATCACATGGACAATGGCAGAATCGGTTATACCAGAATTTAGAGGTCTATATGT
TGCACCACCAACCAAAGGTTCAGTTCATAATCGTGGTGGTGCACTTGATATCTCATTATA
TGATTTATCAAATGGTAAAGTAATTGAAATGGTTGGTGATTTCGATGAATTTAGTATTCG
TTCTCATCGTTCTTATTTTGGTGGTTCAGAACTTCAACGTTGGTATAGAAAACTTTTAAC
AATTGCATTAATCAATAATAATA

---PKDICSKALAESFNTPFPFEDENARINHNLVDLSSISPTLKFDIKYATTDNFTGIQL
YKQAKAFLNKDAAKCLLSAHNWLVENWNVGIIVFDSYRPWNITWTMAESVIPEFRGLYVA
PPTKGSVHNRGGALDISLYDLSNGKVIEMVGDFDEFSIRSHRSYFGGSELQRWYRKLLTI
ALINNN

Frame A:
---iqkiyvqkh*lnhlilhshlrmkmqesiii**iyqayhqllnlilnmqplitlqvfn
finkqkhf*ikmllnvyyqliig**rigmlvl*fsipidhgishgqwqnrlyqnlevyml
hhqpkvqfiivvvhlishymiyqmvk*lkwlvismnlvfvlivlilvvqnfnvgienf*q
lh*siii


Frame B:
---skrymfksis*ii*ysipi*g*kcknqs*fsrfikhitns*i*y*icnh**lyryst
l*tsksifk*rcc*mfiiss*lvsrelecwyysfrfl*tmeyhmdngrigytri*rsicc
ttnqrfss*swwct*ylii*fikw*sn*ngw*fr*i*ysfssflfwwfrtstlv*ktfnn
cinq**


Frame C:
---PKDICSKALAESFNTPFPFEDENARINHNLVDLSSISPTLKFDIKYATTDNFTGIQL
YKQAKAFLNKDAAKCLLSAHNWLVENWNVGIIVFDSYRPWNITWTMAESVIPEFRGLYVA
PPTKGSVHNRGGALDISLYDLSNGKVIEMVGDFDEFSIRSHRSYFGGSELQRWYRKLLTI
ALINNN

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHH233 (SHH233Q) /CSM/SH/SHH2-B/SHH233Q.Seq.d/                       1096   0.0
AHF326 (AHF326Q) /CSM/AH/AHF3-B/AHF326Q.Seq.d/                       1096   0.0
VHQ465 (VHQ465Q) /CSM/VH/VHQ4-C/VHQ465Q.Seq.d/                       1094   0.0
VHP717 (VHP717Q) /CSM/VH/VHP7-A/VHP717Q.Seq.d/                       1094   0.0
VHP605 (VHP605Q) /CSM/VH/VHP6-A/VHP605Q.Seq.d/                       1094   0.0
SHE619 (SHE619Q) /CSM/SH/SHE6-A/SHE619Q.Seq.d/                       1094   0.0
CHL552 (CHL552Q) /CSM/CH/CHL5-C/CHL552Q.Seq.d/                       1094   0.0
CHF614 (CHF614Q) /CSM/CH/CHF6-A/CHF614Q.Seq.d/                       1094   0.0
AHO651 (AHO651Q) /CSM/AH/AHO6-C/AHO651Q.Seq.d/                       1094   0.0
AHO103 (AHO103Q) /CSM/AH/AHO1-A/AHO103Q.Seq.d/                       1094   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC106340|AC106340.5 Rattus norvegicus clone CH230-152H13, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces.    50   0.055  1
BZ208746|BZ208746.1 CH230-487D22.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-487D22, DNA sequence.    50   0.055  1
AC182571|AC182571.1 Mimulus guttatus clone MGBa-65G3, WORKING DRAFT SEQUENCE, 12 unordered pieces.    48   0.22   1
AC166506|AC166506.2 Bos taurus clone CH240-76C12, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces.    40   0.36   4
BF247977|BF247977.1 601859086F1 NIH_MGC_58 Homo sapiens cDNA clone IMAGE:4069772 5', mRNA sequence.    46   0.86   1
AP008210|AP008210.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4.    46   0.86   1
AL731626|AL731626.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11.    46   0.86   1
AL662969|AL662969.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24.    46   0.86   1
CZ544331|CZ544331.1 SRAA-aad55c08.g1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence.    42   1.6    2
AL078597|AL078597.11 Human DNA sequence from clone RP3-442I1 on chromosome 6q12-13  Contains STSs and GSSs.    40   1.6    4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000473_7444(CP000473|pid:none) Solibacter usitatus Ellin6076, ...   132   6e-30
CP001340_2354(CP001340|pid:none) Caulobacter crescentus NA1000, ...   132   8e-30
AE005673_2256(AE005673|pid:none) Caulobacter crescentus CB15, co...   132   8e-30
CP000360_2741(CP000360|pid:none) Acidobacteria bacterium Ellin34...   128   1e-28
CP000927_1402(CP000927|pid:none) Caulobacter sp. K31, complete g...   125   6e-28
CP001097_1231(CP001097|pid:none) Chlorobium limicola DSM 245, co...    95   1e-18
CP000685_4562(CP000685|pid:none) Flavobacterium johnsoniae UW101...    87   4e-16
CP000113_6254(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    86   5e-16
AY458631_5(AY458631|pid:none) Uncultured marine bacterium 159 cl...    84   3e-15
CU928163_1716(CU928163|pid:none) Escherichia coli UMN026 chromos...    83   5e-15

 psg: 0.83  gvh: 0.36  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for SHH233 is cyt

>SHH233Z.Seq
NNNNNNNNNNTATCCAAAAGATATATGTTCAAAAGCATTAGCTGAATCATTTAATACTCC
ATTCCCATTTGAGGATGAAAATGCAAGAATCAATCATAATTTAGTAGATTTATCAAGCAT
ATCACCAACTCTTAAATTTGATATTAAATATGCAACCACTGATAACTTTACAGGTATTCA
ACTTTATAAACAAGCAAAAGCATTTTTAAATAAAGATGCTGCTAAATGTTTATTATCAGC
TCATAATTGGTTAGTAGAGAATTGGAATGTTGGTATTATAGTTTTCGATTCCTATAGACC
ATGGAATATCACATGGACAATGGCAGAATCGGTTATACCAGAATTTAGAGGTCTATATGT
TGCACCACCAACCAAAGGTTCAGTTCATAATCGTGGTGGTGCACTTGATATCTCATTATA
TGATTTATCAAATGGTAAAGTAATTGAAATGGTTGGTGATTTCGATGAATTTAGTATTCG
TTCTCATCGTTCTTATTTTGGTGGTTCAGAACTTCAACGTTGGTATAGAAAACTTTTAAC
AATTGCATTAATCAATAATAATA