>SHH247 (SHH247Q) /CSM/SH/SHH2-B/SHH247Q.Seq.d/
XXXXXXXXXXCAATAAAGAATTGGAAGTCAGATTCAATAATGCCCTCAAATTATCAGGTT
CAGAACTTGCCAAGGAAATCGTTTCCTTATTAGATCTTCTCAAGGTTGTCACCATTTCAG
CAAGTGTTCGTATGAATTTGGTTGAAACTTTGAAGGAAGTTCAAGCACTCCAAAGAAAAC
AAGTCAAAGAACAAGAAACCATCTTGGCTCAACAAGCTCAAACCTATTTAGAGAAAACCT
CTGAAGAATTGGCTAAATCTCAACCAAAGGTTTTCGTAGATTTAGTAAACTTCAATTCAA
ATACTCCTTTAATCACTGAAACCATTAAAAAAATTCAAACTAAATCACCAATGACTGCAA
TCATGTTAATTAGTCCAGATGAAGAAAAAGGTAAAGTTACTTGCATTGGTATCGTTCCAA
AAGATTCTGAAATCTCAAAAACTTTAACTGCAAATGCTTGGGTTGTAAAGGTTACCGAAG
TTTTAGGTGGTAAAGGTGGTGGTAAAGTTGATGTTGCTCAAGGTGTTGGTTCTAAATTAG
ATAAAATCGATGAAGCTATTCTCGTTTCAAGAGAATTTGCAAATGCAANCNATTCAAATT
T

---NKELEVRFNNALKLSGSELAKEIVSLLDLLKVVTISASVRMNLVETLKEVQALQRKQ
VKEQETILAQQAQTYLEKTSEELAKSQPKVFVDLVNFNSNTPLITETIKKIQTKSPMTAI
MLISPDEEKGKVTCIGIVPKDSEISKTLTANAWVVKVTEVLGGKGGGKVDVAQGVGSKLD
KIDEAILVSREFANAXXSN

Frame A:
---NKELEVRFNNALKLSGSELAKEIVSLLDLLKVVTISASVRMNLVETLKEVQALQRKQ
VKEQETILAQQAQTYLEKTSEELAKSQPKVFVDLVNFNSNTPLITETIKKIQTKSPMTAI
MLISPDEEKGKVTCIGIVPKDSEISKTLTANAWVVKVTEVLGGKGGGKVDVAQGVGSKLD
KIDEAILVSREFANAXXSN


Frame B:
---iknwksdsimpsnyqvqnlprksfpy*ifsrlspfqqvfv*iwlkl*rkfkhskenk
sknkkpswlnklkpi*rkplknwlnlnqrfs*i**tsiqill*slkplkkfklnhq*lqs
c*lvqmkkkvkllalvsfqkilksqkl*lqmlgl*rlpkf*vvkvvvklmllkvlvln*i
ksmklfsfqenlqmqxiqi


Frame C:
---*rigsqiq*cpqiirfrtcqgnrflirssqgchhfskcsyefg*nfegssstpkkts
qrtrnhlgstssnlfrenl*rig*istkgfrrfsklqfkysfnh*nh*knsn*itndcnh
vn*sr*rkr*sylhwyrskrf*nlknfnckclgckgyrsfrw*rww*s*ccsrcwf*ir*
nr*sysrfkrickcxxfkf

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHH247 (SHH247Q) /CSM/SH/SHH2-B/SHH247Q.Seq.d/                       1118   0.0
AHB873 (AHB873Q) /CSM/AH/AHB8-D/AHB873Q.Seq.d/                       1118   0.0
VHK630 (VHK630Q) /CSM/VH/VHK6-B/VHK630Q.Seq.d/                       1116   0.0
VHI681 (VHI681Q) /CSM/VH/VHI6-D/VHI681Q.Seq.d/                       1116   0.0
SHL816 (SHL816Q) /CSM/SH/SHL8-A/SHL816Q.Seq.d/                       1116   0.0
AHN845 (AHN845Q) /CSM/AH/AHN8-B/AHN845Q.Seq.d/                       1112   0.0
VHD392 (VHD392Q) /CSM/VH/VHD3-D/VHD392Q.Seq.d/                       1110   0.0
SHA383 (SHA383Q) /CSM/SH/SHA3-D/SHA383Q.Seq.d/                       1110   0.0
SHG234 (SHG234Q) /CSM/SH/SHG2-B/SHG234Q.Seq.d/                       1108   0.0
AHC193 (AHC193Q) /CSM/AH/AHC1-D/AHC193Q.Seq.d/                       1092   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF188717|AF188717.1 Dictyostelium discoideum alanyl-tRNA synthetase (AlaS) mRNA, complete cds.   626   0.0    2
AC095470|AC095470.6 Rattus norvegicus clone CH230-7H22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    50   0.034  2
AC134194|AC134194.2 Rattus norvegicus clone CH230-223M19, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    50   0.040  3
AR319950|AR319950.1 Sequence 2500 from patent US 6562958.          48   0.23   1
AP004091|AP004091.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1513_F01, WORKING DRAFT SEQUENCE, 1 ordered pieces.    46   0.92   1
CR330124|CR330124.1 mte1-59D18FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula.    46   0.92   1
CL627942|CL627942.1 OR_BBa0025L21.f OR_BBa Oryza rufipogon genomic clone OR_BBa0025L21 5', genomic survey sequence.    46   0.92   1
CG923732|CG923732.1 MBEDV85TFC mth2 Medicago truncatula genomic clone 35O2, genomic survey sequence.    46   0.92   1
CZ498632|CZ498632.1 GMW2-31H15a.g1 GMW2 Glycine max genomic, genomic survey sequence.    46   0.92   1
CZ107085|CZ107085.1 OM__Ba0117G02.f OM__Ba Oryza minuta genomic clone OM__Ba0117G02 5', genomic survey sequence.    46   0.92   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54Y20) RecName: Full=Alanyl-tRNA synthetase;          EC=6.1.1...   309   3e-83
BC161712_1(BC161712|pid:none) Xenopus laevis hypothetical protei...    59   1e-07
AY069255_1(AY069255|pid:none) Drosophila melanogaster GM03058 fu...    56   6e-07
AY069773_1(AY069773|pid:none) Drosophila melanogaster SD01519 fu...    56   6e-07
DQ353802_1(DQ353802|pid:none) Ictalurus punctatus isolate C108BF...    56   6e-07
BC128794_1(BC128794|pid:none) Danio rerio alanyl-tRNA synthetase...    55   2e-06
BX649641_5(BX649641|pid:none) Zebrafish DNA sequence from clone ...    54   4e-06
BC098738_1(BC098738|pid:none) Rattus norvegicus alanyl-tRNA synt...    52   2e-05
(Q5RC02) RecName: Full=Alanyl-tRNA synthetase, cytoplasmic;     ...    50   3e-05
AE017346_259(AE017346|pid:none) Cryptococcus neoformans var. neo...    50   5e-05

 psg: 0.68  gvh: 0.55  alm: 0.31  top: 0.67  tms: 0.07  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.06  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SHH247 is nuc

>SHH247Z.Seq
NNNNNNNNNNCAATAAAGAATTGGAAGTCAGATTCAATAATGCCCTCAAATTATCAGGTT
CAGAACTTGCCAAGGAAATCGTTTCCTTATTAGATCTTCTCAAGGTTGTCACCATTTCAG
CAAGTGTTCGTATGAATTTGGTTGAAACTTTGAAGGAAGTTCAAGCACTCCAAAGAAAAC
AAGTCAAAGAACAAGAAACCATCTTGGCTCAACAAGCTCAAACCTATTTAGAGAAAACCT
CTGAAGAATTGGCTAAATCTCAACCAAAGGTTTTCGTAGATTTAGTAAACTTCAATTCAA
ATACTCCTTTAATCACTGAAACCATTAAAAAAATTCAAACTAAATCACCAATGACTGCAA
TCATGTTAATTAGTCCAGATGAAGAAAAAGGTAAAGTTACTTGCATTGGTATCGTTCCAA
AAGATTCTGAAATCTCAAAAACTTTAACTGCAAATGCTTGGGTTGTAAAGGTTACCGAAG
TTTTAGGTGGTAAAGGTGGTGGTAAAGTTGATGTTGCTCAAGGTGTTGGTTCTAAATTAG
ATAAAATCGATGAAGCTATTCTCGTTTCAAGAGAATTTGCAAATGCAANCNATTCAAATT
T