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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHI133
Library SH
(Link to library)
Clone ID SHI133
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15687-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHI133 (SHI133Q) /CSM/SH/SHI1-B/SHI133Q.Seq.d/
GAAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTCA
AAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGAGCA
ACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAGA
AGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAAT
TTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAAT
TTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAGA
AACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAATC
ATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTATC
AGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGAT
CTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGCTGT
CTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGATAGTATAATTACACA
AAATACTGCTTTAGXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
kktnnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKIE
EALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILKE
TAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFASI
YQSQKNIHTQFFKNVHLQAVYYSMIDIFSVLINLDSIITQNTAL---
Translated Amino Acid sequence (All Frames) 
Frame A:
ekneqpnlenghilfg**wsk*riyi*ci*rwfi*igwratin*t*sics*lcttnledr
rsir*nik*smgykyrssfnl**ts*tirfn*ig*n*s*nfq*snisilfnl*sn*nfkr
nsrk*ilftinsiwrdyr*iirr*ctn*sw*iitiyd*fisick*mlfin*kyy*sicid
lsitkeytytil*ecsftscllfnd*yifsinkfr*ynytkycf---


Frame B:
kktnnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKIE
EALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILKE
TAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFASI
YQSQKNIHTQFFKNVHLQAVYYSMIDIFSVLINLDSIITQNTAL---


Frame C:
kkrttqfrkwphpirlimvkmknihlmhlkmvhlnwlesnn*lnlinlqlimhnkfgr*k
kh*mkh*mkygi*i*iqfqfiinlmnn*i*lnwlkliikfsik*y*yslqfviklef*kk
qqkvnfihh*qylerlqvnhqkvmyklklvnyyhl*liyqhl*idvih*leillvnlhrs
inhkriyihnslrmfiyklsiiq*liyfqy**i*iv*lhkill---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ112 (VHQ112Q) /CSM/VH/VHQ1-A/VHQ112Q.Seq.d/                       1320   0.0
VHP507 (VHP507Q) /CSM/VH/VHP5-A/VHP507Q.Seq.d/                       1320   0.0
VHI654 (VHI654Q) /CSM/VH/VHI6-C/VHI654Q.Seq.d/                       1320   0.0
VHA138 (VHA138Q) /CSM/VH/VHA1-B/VHA138Q.Seq.d/                       1320   0.0
SHL271 (SHL271Q) /CSM/SH/SHL2-C/SHL271Q.Seq.d/                       1320   0.0
SHI133 (SHI133Q) /CSM/SH/SHI1-B/SHI133Q.Seq.d/                       1320   0.0
SHC138 (SHC138Q) /CSM/SH/SHC1-B/SHC138Q.Seq.d/                       1320   0.0
CHO318 (CHO318Q) /CSM/CH/CHO3-A/CHO318Q.Seq.d/                       1320   0.0
CHI453 (CHI453Q) /CSM/CH/CHI4-C/CHI453Q.Seq.d/                       1320   0.0
CHG805 (CHG805Q) /CSM/CH/CHG8-A/CHG805Q.Seq.d/                       1320   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CR450713|CR450713.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    38   0.001  8
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    34   0.009  11
BX276109|BX276109.11 Mouse DNA sequence from clone RP23-209P8 on chromosome 2.    50   0.017  4
AC118642|AC118642.11 Mus musculus chromosome 18, clone RP24-112L21, complete sequence.    42   0.066  4
CR044130|CR044130.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP186g09.    50   0.068  1
CR023465|CR023465.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP421e10.    50   0.068  1
CR017539|CR017539.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP47e19.    50   0.068  1
CR034434|CR034434.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP47e19.    50   0.068  1
CR103667|CR103667.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP142o16.    50   0.068  1
BX990136|BX990136.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP414o21.    50   0.068  1
dna update 2006. 4.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54R74) RecName: Full=UPF0681 protein;                               426   e-118
(Q3UMB9) RecName: Full=UPF0681 protein KIAA1033;                      167   3e-40
AK145000_1(AK145000|pid:none) Mus musculus mammary gland RCB-052...   167   3e-40
BC110850_1(BC110850|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   166   4e-40
AB028956_1(AB028956|pid:none) Homo sapiens mRNA for KIAA1033 pro...   166   4e-40
BC143373_1(BC143373|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   166   4e-40
CR858798_1(CR858798|pid:none) Pongo abelii mRNA; cDNA DKFZp468B1...   153   4e-36
AY371725_1(AY371725|pid:none) Tetrahymena thermophila macronucle...    67   6e-10
BC020314_1(BC020314|pid:none) Mus musculus RIKEN cDNA A230046K03...    65   2e-09
AX882617_1(AX882617|pid:none) Sequence 17522 from Patent EP10746...    65   2e-09
protein update 2009. 4.21
PSORT 

 psg: 0.79  gvh: 0.25  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SHI133 is nuc
5' end seq. ID SHI133F
5' end seq. 
>SHI133F.Seq
GAAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTCA
AAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGAGCA
ACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAGA
AGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAAT
TTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAAT
TTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAGA
AACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAATC
ATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTATC
AGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGAT
CTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGCTGT
CTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGATAGTATAATTACACA
AAATACTGCTTTAGNNNNNNNNNN
Length of 5' end seq. 684
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -