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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHI251
Library SH
(Link to library)
Clone ID SHI251
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11819-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHI251 (SHI251Q) /CSM/SH/SHI2-C/SHI251Q.Seq.d/
ATACTTTTTCAAATACTTAAGATATCAACAAATAAATAATAAATTAAAAATTATTATGTA
AATAGAGTTTATGAAATAATAATTATAATAAATATATGTACATATAAAAAAAAAAXXXXX
XXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
ilfqilkistnk**IKNYYVNRVYEIIIIINICTYKKK---
Translated Amino Acid sequence (All Frames) 
Frame A:
ilfqilkistnk**IKNYYVNRVYEIIIIINICTYKKK---


Frame B:
yffkylryqqinnklkiim*iefmk**l**iyvhikk---


Frame C:
tfsnt*dink*iin*kllck*sl*nnnynkymyi*kk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHI251 (SHI251Q) /CSM/SH/SHI2-C/SHI251Q.Seq.d/                         64   5e-10
CHP195 (CHP195Q) /CSM/CH/CHP1-D/CHP195Q.Seq.d/                         48   3e-05
CHK646 (CHK646Q) /CSM/CH/CHK6-B/CHK646Q.Seq.d/                         44   5e-04
VSG647 (VSG647Q) /CSM/VS/VSG6-B/VSG647Q.Seq.d/                         30   6.8
VFG292 (VFG292Q) /CSM/VF/VFG2-D/VFG292Q.Seq.d/                         30   6.8
SSH356 (SSH356Q) /CSM/SS/SSH3-C/SSH356Q.Seq.d/                         30   6.8
SHC514 (SHC514Q) /CSM/SH/SHC5-A/SHC514Q.Seq.d/                         30   6.8
SHA417 (SHA417Q) /CSM/SH/SHA4-A/SHA417Q.Seq.d/                         30   6.8
SFK128 (SFK128Q) /CSM/SF/SFK1-B/SFK128Q.Seq.d/                         30   6.8
SFJ381 (SFJ381Q) /CSM/SF/SFJ3-D/SFJ381Q.Seq.d/                         30   6.8
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strainAX4, complete sequence.    64   7e-07  1
AC158827|AC158827.3 Bos taurus clone CH240-39N2, *** SEQUENCING IN PROGRESS ***, 52 unordered pieces.    42   2.6    1
dna update 2006. 4.21
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 80,294,897
protein update 2009. 4.21
PSORT 

 psg: 0.92  gvh: 0.18  alm: 0.43  top: 0.47  tms: 0.00  mit: 0.37  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: vacuolar
	  8.0 %: mitochondrial

>> prediction for SHI251 is nuc
5' end seq. ID SHI251F
5' end seq. 
>SHI251F.Seq
ATACTTTTTCAAATACTTAAGATATCAACAAATAAATAATAAATTAAAAATTATTATGTA
AATAGAGTTTATGAAATAATAATTATAATAAATATATGTACATATAAAAAAAAAANNNNN
NNNNN
Length of 5' end seq. 125
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -