>SHI542 (SHI542Q) /CSM/SH/SHI5-B/SHI542Q.Seq.d/
TTGATTTTATCATGTATCATTTCAACATGTNCATCTAATCAAATTTCTGAANATGNGGGT
AAAGCAATTAATCAAAAATTAAATGAAAATNTTGAAAAAGTTGAANATGTAGTTGTNCAA
TTTGAAAATGTTGCAAATCAAGTTNTTGAAAAATTAAAAGTTGANCATCAAANACAANAA
TTATTAGGNGAAGTAAAACATGATTCATTAANANACTNTGCANCAAATTACATTNGGGGA
TTACTTGATAAAATTCAAAGTTNTTTNCCAAAANACAACAATAAAGTTTCAAAAGTTGAA
AAANCATTTTCAAGNGGCCAAAATAATAATATCGGTAGCAXXXXXXXXXX

LILSCIISTCXSNQISEXXGKAINQKLNENXEKVEXVVVQFENVANQVXEKLKVXHQXQX
LLGEVKHDSLXXXAXNYIXGLLDKIQSXXPKXNNKVSKVEKXFSXGQNNNIGS---

Frame A:
LILSCIISTCXSNQISEXXGKAINQKLNENXEKVEXVVVQFENVANQVXEKLKVXHQXQX
LLGEVKHDSLXXXAXNYIXGLLDKIQSXXPKXNNKVSKVEKXFSXGQNNNIGS---


Frame B:
*fyhvsfqhvhlikflxmxvkqlikn*mkxlkklxm*lxnlkmlqikxlkn*klxikxxn
y*xk*nmih*xtxxqitxgdylikfkvxxqxttikfqklkxhfqxakiiisv---


Frame C:
dfimyhfnmxi*snf*xxg*sn*skik*kx*ks*xcscxi*kcckssx*kiks*xsxtxi
irxskt*fixxlcxklhxgit**nskxfxkxqq*sfks*kxifkxpk**yr*---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHI542 (SHI542Q) /CSM/SH/SHI5-B/SHI542Q.Seq.d/                        301   4e-81
CHL705 (CHL705Q) /CSM/CH/CHL7-A/CHL705Q.Seq.d/                        299   1e-80
SHJ791 (SHJ791Q) /CSM/SH/SHJ7-D/SHJ791Q.Seq.d/                        295   2e-79
CHH755 (CHH755Q) /CSM/CH/CHH7-C/CHH755Q.Seq.d/                        295   2e-79
CHF442 (CHF442Q) /CSM/CH/CHF4-B/CHF442Q.Seq.d/                        295   2e-79
AHM834 (AHM834Q) /CSM/AH/AHM8-B/AHM834Q.Seq.d/                        293   9e-79
AHE676 (AHE676Q) /CSM/AH/AHE6-D/AHE676Q.Seq.d/                        293   9e-79
AHR237 (AHR237Q) /CSM/AH/AHR2-B/AHR237Q.Seq.d/                        291   4e-78
SHL647 (SHL647Q) /CSM/SH/SHL6-B/SHL647Q.Seq.d/                        289   1e-77
SHL645 (SHL645Q) /CSM/SH/SHL6-B/SHL645Q.Seq.d/                        289   1e-77

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   194   7e-93  4
BB343265|BB343265.2 Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930044A06, 3' end partial sequence.    42   8.2    1
DB040845|DB040845.1 Homo sapiens cDNA clone TESTI2027750, 5' end, mRNA sequence.    42   8.2    1
AW170811|AW170811.1 fi33a02.x1 Sugano Kawakami zebrafish DRA Danio rerio cDNA clone 2639402 3' similar to contains element LTR9 repetitive element ;, mRNA sequence.    42   8.2    1
CR129751|CR129751.1 Reverse strand read from insert in 5'HPRT insertion targeting and chromosome engineering clone MHPN23d13.    42   8.2    1
CR246951|CR246951.1 Reverse strand read from insert in 5'HPRT insertion targeting and chromosome engineering clone MHPN147m24.    42   8.2    1
CR010531|CR010531.1 Reverse strand read from insert in 5'HPRT insertion targeting and chromosome engineering clone MHPN217j13.    42   8.2    1
CR103480|CR103480.1 Reverse strand read from insert in 5'HPRT insertion targeting and chromosome engineering clone MHPN108b08.    42   8.2    1
DX208129|DX208129.1 OR_ABa0079L11.f OR_ABa Oryza ridleyi genomic clone OR_ABa0079L11 5', genomic survey sequence.    42   8.2    1
AC126449|AC126449.4 Mus musculus chromosome UNK clone RP23-359P11, WORKING DRAFT SEQUENCE, 3 unordered pieces.    42   8.2    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...    95   8e-19

 psg: 0.94  gvh: 0.55  alm: 0.46  top: 0.47  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 24.0 %: extracellular, including cell wall
	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SHI542 is exc

>SHI542F.Seq
TTGATTTTATCATGTATCATTTCAACATGTNCATCTAATCAAATTTCTGAANATGNGGGT
AAAGCAATTAATCAAAAATTAAATGAAAATNTTGAAAAAGTTGAANATGTAGTTGTNCAA
TTTGAAAATGTTGCAAATCAAGTTNTTGAAAAATTAAAAGTTGANCATCAAANACAANAA
TTATTAGGNGAAGTAAAACATGATTCATTAANANACTNTGCANCAAATTACATTNGGGGA
TTACTTGATAAAATTCAAAGTTNTTTNCCAAAANACAACAATAAAGTTTCAAAAGTTGAA
AAANCATTTTCAAGNGGCCAAAATAATAATATCGGTAGCANNNNNNNNNN