SHI542
Library SH
(Link to library)
Clone ID SHI542
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHI542 (SHI542Q) /CSM/SH/SHI5-B/SHI542Q.Seq.d/
TTGATTTTATCATGTATCATTTCAACATGTNCATCTAATCAAATTTCTGAANATGNGGGT
AAAGCAATTAATCAAAAATTAAATGAAAATNTTGAAAAAGTTGAANATGTAGTTGTNCAA
TTTGAAAATGTTGCAAATCAAGTTNTTGAAAAATTAAAAGTTGANCATCAAANACAANAA
TTATTAGGNGAAGTAAAACATGATTCATTAANANACTNTGCANCAAATTACATTNGGGGA
TTACTTGATAAAATTCAAAGTTNTTTNCCAAAANACAACAATAAAGTTTCAAAAGTTGAA
AAANCATTTTCAAGNGGCCAAAATAATAATATCGGTAGCAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
LILSCIISTCXSNQISEXXGKAINQKLNENXEKVEXVVVQFENVANQVXEKLKVXHQXQX
LLGEVKHDSLXXXAXNYIXGLLDKIQSXXPKXNNKVSKVEKXFSXGQNNNIGS---


Translated Amino Acid sequence (All Frames)
Frame A:
LILSCIISTCXSNQISEXXGKAINQKLNENXEKVEXVVVQFENVANQVXEKLKVXHQXQX
LLGEVKHDSLXXXAXNYIXGLLDKIQSXXPKXNNKVSKVEKXFSXGQNNNIGS---


Frame B:
*fyhvsfqhvhlikflxmxvkqlikn*mkxlkklxm*lxnlkmlqikxlkn*klxikxxn
y*xk*nmih*xtxxqitxgdylikfkvxxqxttikfqklkxhfqxakiiisv---


Frame C:
dfimyhfnmxi*snf*xxg*sn*skik*kx*ks*xcscxi*kcckssx*kiks*xsxtxi
irxskt*fixxlcxklhxgit**nskxfxkxqq*sfks*kxifkxpk**yr*---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHI542 (SHI542Q) /CSM/SH/SHI5-B/SHI542Q.Seq.d/ 301 4e-81
CHL705 (CHL705Q) /CSM/CH/CHL7-A/CHL705Q.Seq.d/ 299 1e-80
SHJ791 (SHJ791Q) /CSM/SH/SHJ7-D/SHJ791Q.Seq.d/ 295 2e-79
CHH755 (CHH755Q) /CSM/CH/CHH7-C/CHH755Q.Seq.d/ 295 2e-79
CHF442 (CHF442Q) /CSM/CH/CHF4-B/CHF442Q.Seq.d/ 295 2e-79
AHM834 (AHM834Q) /CSM/AH/AHM8-B/AHM834Q.Seq.d/ 293 9e-79
AHE676 (AHE676Q) /CSM/AH/AHE6-D/AHE676Q.Seq.d/ 293 9e-79
AHR237 (AHR237Q) /CSM/AH/AHR2-B/AHR237Q.Seq.d/ 291 4e-78
SHL647 (SHL647Q) /CSM/SH/SHL6-B/SHL647Q.Seq.d/ 289 1e-77
SHL645 (SHL645Q) /CSM/SH/SHL6-B/SHL645Q.Seq.d/ 289 1e-77

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 194 7e-93 4
BB343265|BB343265.2 Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930044A06, 3' end partial sequence. 42 8.2 1
DB040845|DB040845.1 Homo sapiens cDNA clone TESTI2027750, 5' end, mRNA sequence. 42 8.2 1
AW170811|AW170811.1 fi33a02.x1 Sugano Kawakami zebrafish DRA Danio rerio cDNA clone 2639402 3' similar to contains element LTR9 repetitive element ;, mRNA sequence. 42 8.2 1
CR129751|CR129751.1 Reverse strand read from insert in 5'HPRT insertion targeting and chromosome engineering clone MHPN23d13. 42 8.2 1
CR246951|CR246951.1 Reverse strand read from insert in 5'HPRT insertion targeting and chromosome engineering clone MHPN147m24. 42 8.2 1
CR010531|CR010531.1 Reverse strand read from insert in 5'HPRT insertion targeting and chromosome engineering clone MHPN217j13. 42 8.2 1
CR103480|CR103480.1 Reverse strand read from insert in 5'HPRT insertion targeting and chromosome engineering clone MHPN108b08. 42 8.2 1
DX208129|DX208129.1 OR_ABa0079L11.f OR_ABa Oryza ridleyi genomic clone OR_ABa0079L11 5', genomic survey sequence. 42 8.2 1
AC126449|AC126449.4 Mus musculus chromosome UNK clone RP23-359P11, WORKING DRAFT SEQUENCE, 3 unordered pieces. 42 8.2 1
dna update 2006. 4.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 95 8e-19

protein update 2008.11.22
PSORT

psg: 0.94 gvh: 0.55 alm: 0.46 top: 0.47 tms: 0.00 mit: 0.31 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

24.0 %: extracellular, including cell wall
24.0 %: cytoplasmic
20.0 %: nuclear
16.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for SHI542 is exc

5' end seq. ID SHI542F
5' end seq.
>SHI542F.Seq
TTGATTTTATCATGTATCATTTCAACATGTNCATCTAATCAAATTTCTGAANATGNGGGT
AAAGCAATTAATCAAAAATTAAATGAAAATNTTGAAAAAGTTGAANATGTAGTTGTNCAA
TTTGAAAATGTTGCAAATCAAGTTNTTGAAAAATTAAAAGTTGANCATCAAANACAANAA
TTATTAGGNGAAGTAAAACATGATTCATTAANANACTNTGCANCAAATTACATTNGGGGA
TTACTTGATAAAATTCAAAGTTNTTTNCCAAAANACAACAATAAAGTTTCAAAAGTTGAA
AAANCATTTTCAAGNGGCCAAAATAATAATATCGGTAGCANNNNNNNNNN
Length of 5' end seq. 350
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -