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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHI867
Library SH
(Link to library)
Clone ID SHI867
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11503-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHI867 (SHI867Q) /CSM/SH/SHI8-C/SHI867Q.Seq.d/
ATCAAAAAAAACAGTTTTCTTTGTAAATTTATTAATATATGATTAGAAAATCAAATAATT
TTTCAATTTTGTTTGCAATATTTTTAAAAATTGTTTTTGTGGTTTCAGCGCCGCTATGCC
CAAATTCAACGATTTTATTAAATTACAACATCCTAACGGTTTATAATTCATCAGAAGGAT
GTGGTTTTAATAACGAGCCGATATGCACATCACTCAAAGATGCTGTTAGCAGAGCATTTT
TATTAATATCAAATAATAGTCGTGTTTGTATTGGTATCATTGGTAATATAAATGTAACAT
CAGAACAAATTACATTGGGTAATTATTGTGGTGCCTTGTGGATCACTTCAGAAAATATCA
ATAATGAAAATAATAATTATACAATAATCGATGGATCAAGCTCAACCCAACCATTTCTGA
CATATGAACCAGAAGAGGAAAATAATCAAACTCAATCATGTTCAAGATGGTTCTTCTTTC
AATATATAAATTTTACAAATTGGGATAGACCAATTGTCTCTGTGACCAATCAAATTTCAG
ATAATTCCGAGAAACAATCAAGTTTCATATATTTCGAAAGTTGTAATATAATTTCACCAA
GAAGTATTGCTTTTATTTATAACTATCAATCTTTGAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
qkkqfsl*iy*YMIRKSNNFSILFAIFLKIVFVVSAPLCPNSTILLNYNILTVYNSSEGC
GFNNEPICTSLKDAVSRAFLLISNNSRVCIGIIGNINVTSEQITLGNYCGALWITSENIN
NENNNYTIIDGSSSTQPFLTYEPEEENNQTQSCSRWFFFQYINFTNWDRPIVSVTNQISD
NSEKQSSFIYFESCNIISPRSIAFIYNYQSL---
Translated Amino Acid sequence (All Frames) 
Frame A:
ikknsflckfini*lenqiifqfclqyf*klflwfqrryaqiqrfy*itts*rfiihqkd
vvlitsryahhskmllaehfy*yqiivvfvlvslvi*m*hqnklhwviivvpcgslqkis
imkiiiiq*smdqaqpnhf*hmnqkrkiiklnhvqdgssfni*ilqigidqlsl*pikfq
iiprnnqvsyiskvvi*fhqevlllfitinl---


Frame B:
skktvffvnlliyd*kik*ffnfvcnifkncfcgfsaampkfndfiklqhpngl*firrm
wf**radmhitqrcc*qsifinik**sclywyhw*ykcnirtnyig*llwclvdhfrkyq
**k**lynnrwiklnptisdi*trrgk*snsimfkmvllsiykfyklg*tnclcdqsnfr
*fretikfhifrkl*ynftkkycfyl*lsif---


Frame C:
qkkqfsl*iy*YMIRKSNNFSILFAIFLKIVFVVSAPLCPNSTILLNYNILTVYNSSEGC
GFNNEPICTSLKDAVSRAFLLISNNSRVCIGIIGNINVTSEQITLGNYCGALWITSENIN
NENNNYTIIDGSSSTQPFLTYEPEEENNQTQSCSRWFFFQYINFTNWDRPIVSVTNQISD
NSEKQSSFIYFESCNIISPRSIAFIYNYQSL---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHI867 (SHI867Q) /CSM/SH/SHI8-C/SHI867Q.Seq.d/                       1053   0.0
SHI484 (SHI484Q) /CSM/SH/SHI4-D/SHI484Q.Seq.d/                        991   0.0
AHK751 (AHK751Q) /CSM/AH/AHK7-C/AHK751Q.Seq.d/                        955   0.0
SHD783 (SHD783Q) /CSM/SH/SHD7-D/SHD783Q.Seq.d/                        852   0.0
VFH474 (VFH474Q) /CSM/VF/VFH4-D/VFH474Q.Seq.d/                        837   0.0
SHB151 (SHB151Q) /CSM/SH/SHB1-C/SHB151Q.Seq.d/                        805   0.0
AHH235 (AHH235Q) /CSM/AH/AHH2-B/AHH235Q.Seq.d/                        751   0.0
AHK839 (AHK839Q) /CSM/AH/AHK8-B/AHK839Q.Seq.d/                        747   0.0
AHF753 (AHF753Q) /CSM/AH/AHF7-C/AHF753Q.Seq.d/                        747   0.0
VHI729 (VHI729Q) /CSM/VH/VHI7-B/VHI729Q.Seq.d/                        741   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CR376736|CR376736.5 Zebrafish DNA sequence from clone DKEYP-86G11 in linkage group 24.    54   0.004  1
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    38   0.013  9
AX826096|AX826096.1 Sequence 348 from Patent WO03072821.           52   0.016  1
AX825968|AX825968.1 Sequence 220 from Patent WO03072821.           52   0.016  1
AX822456|AX822456.1 Sequence 348 from Patent EP1340818.            52   0.016  1
AX822328|AX822328.1 Sequence 220 from Patent EP1340818.            52   0.016  1
AX795936|AX795936.1 Sequence 279 from Patent WO03052135.           52   0.016  1
AX795820|AX795820.1 Sequence 163 from Patent WO03052135.           52   0.016  1
AX349172|AX349172.1 Sequence 98 from Patent WO0202808.             52   0.016  1
AX347451|AX347451.1 Sequence 98 from Patent WO0200705.             52   0.016  1
dna update 2006. 5. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF020283_1(AF020283|pid:none) Dictyostelium discoideum DG2044 ge...    75   1e-12
CP000766_763(CP000766|pid:none) Rickettsia rickettsii str. Iowa,...    37   0.60
AE006914_723(AE006914|pid:none) Rickettsia conorii str. Malish 7...    35   2.3
(P25573) RecName: Full=Mitochondrial inner membrane i-AAA protea...    33   8.8
protein update 2009. 4.22
PSORT 

 psg: 0.99  gvh: 0.48  alm: 0.21  top: 0.27  tms: 0.07  mit: 0.47  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.45  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: mitochondrial
	 20.0 %: Golgi
	 12.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall

>> prediction for SHI867 is mit
5' end seq. ID SHI867F
5' end seq. 
>SHI867F.Seq
ATCAAAAAAAACAGTTTTCTTTGTAAATTTATTAATATATGATTAGAAAATCAAATAATT
TTTCAATTTTGTTTGCAATATTTTTAAAAATTGTTTTTGTGGTTTCAGCGCCGCTATGCC
CAAATTCAACGATTTTATTAAATTACAACATCCTAACGGTTTATAATTCATCAGAAGGAT
GTGGTTTTAATAACGAGCCGATATGCACATCACTCAAAGATGCTGTTAGCAGAGCATTTT
TATTAATATCAAATAATAGTCGTGTTTGTATTGGTATCATTGGTAATATAAATGTAACAT
CAGAACAAATTACATTGGGTAATTATTGTGGTGCCTTGTGGATCACTTCAGAAAATATCA
ATAATGAAAATAATAATTATACAATAATCGATGGATCAAGCTCAACCCAACCATTTCTGA
CATATGAACCAGAAGAGGAAAATAATCAAACTCAATCATGTTCAAGATGGTTCTTCTTTC
AATATATAAATTTTACAAATTGGGATAGACCAATTGTCTCTGTGACCAATCAAATTTCAG
ATAATTCCGAGAAACAATCAAGTTTCATATATTTCGAAAGTTGTAATATAATTTCACCAA
GAAGTATTGCTTTTATTTATAACTATCAATCTTTGANNNNNNNNNN
Length of 5' end seq. 646
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -