NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC413
Library SL
(Link to library)
Clone ID SLC413
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15735-1
Original site URL
Representative seq. ID SLC413P
(Link to Original site)
Representative DNA sequence 
>SLC413 (SLC413Q) /CSM/SL/SLC4-A/SLC413Q.Seq.d/
GAAAGATTATGGAAGTGTTATTGGTATTGATTTAGGTACTACCTATTCATGTGTTGGTGT
CTTCAAGAAAGGTAAAGTTGAAATTATTCCAAATGATCAAGGTAATCGTATTACTCCATC
ATATGTTGCATTCACTGAAACTGAACGTCTCATTGGTGAAGCTGCAAAGAATCAAGCAAC
TCTCAACCCAGAAAATACAATTTTTGATATTAAACGTTTAATTGGTAGAAGATTTGATGA
TGAAGAAGTTCAAAGAGATATGAAATTATTACCATATAAAATTGTTTCAAAAAATAATAA
ACCATACGTTGTAGTTAAAGTTAAAGGTGAAGAAAAGACTTACTCACCAGAAGAAATCTC
AGCAATGATCCTTGGTAGAATGAAGGAAATTGCCGAAGCATCCCTTGGTAAGACAGTAAC
TCACGCCGTTGTAACATGTCCAGCTTATTTCAATGATGCACAACGTGCAGCCACAAAGGA
TGCAGGTGTTATTGCAGGTCTTGAAGTTTTACGTGTTATTAATGAACCAACCGCAGCAGC
ATTAGCCTATGGTTTCGATGCCACTGGTGATAAGGAAAAGAATATCTTGGTTTACGATTT
AGGTGGTGGTACATTTGATGTTTCAGTTTTATCCATTGAAGATGGTGTATTTGAAGTTCG
TTCAACCAATGGTGACACTCATTTAGXXXXXXXXXXAAGCCGATATCGATCGTATGGTCA
AAGAAGCTGCCGATGCCGCTGATGAAGATAAAGCTGCCAAAGAACGTGTCGAAGCCAAGA
ATACCTTGGAAAATTACATCTATCAAATTAAAACCACCATTGGTGATAAAGATAAGATCG
GTGGTAAAATCGAATCAGATGATAAAGAAACCATTGAAACCGCTATCTCTGATGCCCTTT
CTTGGTTGGATGTTAACTCCTCTGCCGAAAAAGAAGAATTTGATGAACAATACAAAATCC
TTGAAAAGATCGTTCAACCAATCTTCTCTAAATTATATGGTGCTGCTGGTGGTTCCCCAA
ATGGCGCTGGTGAAGATATGCCAAACCATGATGAACTTTAAACGCAATTTTCAAATTTTT
TAAAAAAAAAAAGTATAGATTTTAAAAAAAAAATAAAAAATAAAATAAAAAAAAAAAATA
TAAAACAAAAAAAAAAAAAAAA
sequence update 1999. 2.19
Translated Amino Acid sequence 
KDYGSVIGIDLGTTYSCVGVFKKGKVEIIPNDQGNRITPSYVAFTETERLIGEAAKNQAT
LNPENTIFDIKRLIGRRFDDEEVQRDMKLLPYKIVSKNNKPYVVVKVKGEEKTYSPEEIS
AMILGRMKEIAEASLGKTVTHAVVTCPAYFNDAQRAATKDAGVIAGLEVLRVINEPTAAA
LAYGFDATGDKEKNILVYDLGGGTFDVSVLSIEDGVFEVRSTNGDTHL---

---KPISIVWSKKLPMPLMKIKLPKNVSKPRIPWKITSIKLKPPLVIKIRSVVKSNQMIK
KPLKPLSLMPFLGWMLTPLPKKKNLMNNTKSLKRSFNQSSLNYMVLLVVPQMALVKICQT
MMNFKRNFQIF*kkkv*ilkkk*kik*kkki*nkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
erlwkcywy*fryylfmcwclqer*s*nysk*sr*syysiiccih*n*tshw*sckessn
sqprkynf*y*tfnw*ki***rsskryeiiti*ncfkk**tircs*s*r*rkdlltrrnl
sndpw*negncrsipw*dsnsrrcnmsslfq*cttcshkgcrcycrs*sftcy**tnrss
islwfrchw**gkeylglrfrwwyi*cfsfih*rwci*ssfnqw*hsf---

---KPISIVWSKKLPMPLMKIKLPKNVSKPRIPWKITSIKLKPPLVIKIRSVVKSNQMIK
KPLKPLSLMPFLGWMLTPLPKKKNLMNNTKSLKRSFNQSSLNYMVLLVVPQMALVKICQT
MMNFKRNFQIF*kkkv*ilkkk*kik*kkki*nkkkkk

Frame B:
KDYGSVIGIDLGTTYSCVGVFKKGKVEIIPNDQGNRITPSYVAFTETERLIGEAAKNQAT
LNPENTIFDIKRLIGRRFDDEEVQRDMKLLPYKIVSKNNKPYVVVKVKGEEKTYSPEEIS
AMILGRMKEIAEASLGKTVTHAVVTCPAYFNDAQRAATKDAGVIAGLEVLRVINEPTAAA
LAYGFDATGDKEKNILVYDLGGGTFDVSVLSIEDGVFEVRSTNGDTHL---

---sryrsygqrscrcr**r*scqrtcrsqeylgklhlsn*nhhw**r*drw*nrir**r
nh*nryl*cpflvgc*llcrkrri**tiqnp*kdrstnll*iiwccwwfpkwrw*ryakp
**tlnaifkffkkkkyrf*kknkk*nkkkkyktkkkkk

Frame C:
kimevllvli*vlpihvlvssrkvklklfqmikvivllhhmlhslklnvslvklqrikql
stqkiqflilnv*lvedlmmkkfkei*nyyhiklfqkiinhtl*lklkvkkrlthqkksq
q*slve*rklpkhplvrq*ltpl*hvqlismmhnvqpqrmqvllqvlkfyvllmnqpqqh
*pmvsmplvirkriswfti*vvvhlmfqfyplkmvylkfvqpmvtli*---

---adidrmvkeaadaadedkaakerveakntlenyiyqikttigdkdkiggkiesddke
tietaisdalswldvnssaekeefdeqykilekivqpifsklygaaggspngagedmpnh
del*tqfsnflkkksidfkkkiknkikkknikqkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC413 (SLC413Q) /CSM/SL/SLC4-A/SLC413Q.Seq.d/                       2083   0.0
CHG706 (CHG706Q) /CSM/CH/CHG7-A/CHG706Q.Seq.d/                       1174   0.0
AFN441 (AFN441Q) /CSM/AF/AFN4-B/AFN441Q.Seq.d/                       1152   0.0
AFC134 (AFC134Q) /CSM/AF/AFC1-B/AFC134Q.Seq.d/                       1140   0.0
AHI761 (AHI761Q) /CSM/AH/AHI7-C/AHI761Q.Seq.d/                       1084   0.0
AFD384 (AFD384Q) /CSM/AF/AFD3-D/AFD384Q.Seq.d/                       1074   0.0
AHH369 (AHH369Q) /CSM/AH/AHH3-C/AHH369Q.Seq.d/                       1041   0.0
AFD230 (AFD230Q) /CSM/AF/AFD2-B/AFD230Q.Seq.d/                       1029   0.0
AFK152 (AFK152Q) /CSM/AF/AFK1-C/AFK152Q.Seq.d/                       1025   0.0
SFE771 (SFE771Q) /CSM/SF/SFE7-C/SFE771Q.Seq.d/                       1001   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060965) Dictyostelium discoideum slug cDNA, clone SLC413.     1358   0.0    1
(BJ365376) Dictyostelium discoideum cDNA clone:ddc35l01, 5' ...  1174   0.0    1
(BJ330063) Dictyostelium discoideum cDNA clone:dda27b12, 5' ...  1152   0.0    1
(BJ324201) Dictyostelium discoideum cDNA clone:dda5c09, 5' e...  1140   0.0    1
(BJ335016) Dictyostelium discoideum cDNA clone:dda48j15, 5' ...  1084   0.0    1
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...   904   0.0    3
(BJ324756) Dictyostelium discoideum cDNA clone:dda7h21, 5' e...  1074   0.0    1
(BJ334240) Dictyostelium discoideum cDNA clone:dda45j17, 5' ...  1041   0.0    1
(BJ327733) Dictyostelium discoideum cDNA clone:dda21g13, 5' ...  1025   0.0    1
(BJ341602) Dictyostelium discoideum cDNA clone:dda7k08, 3' e...   549   0.0    2
dna update 2009. 3. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP004121_6(AP004121|pid:none) Oryza sativa Japonica Group genomi...   327   6e-88
(P24067) RecName: Full=Luminal-binding protein 2;          Short...   324   3e-87
(Q9HG01) RecName: Full=78 kDa glucose-regulated protein homolog;...   323   5e-87
EF689138_1(EF689138|pid:none) Magnaporthe oryzae Hsp70 (KAR2) ge...   322   1e-86
AB095185_1(AB095185|pid:none) Cyanidioschyzon merolae gene for H...   322   2e-86
AF006825_1(AF006825|pid:none) Oryza sativa endosperm lumenal bin...   322   2e-86
(P49118) RecName: Full=Luminal-binding protein;          Short=B...   321   3e-86
T50464(T50464) glucose-regulated protein 78 [imported] - Neurosp...   321   3e-86
FM992689_102(FM992689|pid:none) Candida dubliniensis CD36 chromo...   320   4e-86
(Q03684) RecName: Full=Luminal-binding protein 4;          Short...   320   6e-86
protein update 2009. 6. 1
PSORT 

 psg: 0.75  gvh: 0.36  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.13  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for SLC413 is nuc
5' end seq. ID SLC413F
5' end seq. 
>SLC413F.Seq
GAAAGATTATGGAAGTGTTATTGGTATTGATTTAGGTACTACCTATTCATGTGTTGGTGT
CTTCAAGAAAGGTAAAGTTGAAATTATTCCAAATGATCAAGGTAATCGTATTACTCCATC
ATATGTTGCATTCACTGAAACTGAACGTCTCATTGGTGAAGCTGCAAAGAATCAAGCAAC
TCTCAACCCAGAAAATACAATTTTTGATATTAAACGTTTAATTGGTAGAAGATTTGATGA
TGAAGAAGTTCAAAGAGATATGAAATTATTACCATATAAAATTGTTTCAAAAAATAATAA
ACCATACGTTGTAGTTAAAGTTAAAGGTGAAGAAAAGACTTACTCACCAGAAGAAATCTC
AGCAATGATCCTTGGTAGAATGAAGGAAATTGCCGAAGCATCCCTTGGTAAGACAGTAAC
TCACGCCGTTGTAACATGTCCAGCTTATTTCAATGATGCACAACGTGCAGCCACAAAGGA
TGCAGGTGTTATTGCAGGTCTTGAAGTTTTACGTGTTATTAATGAACCAACCGCAGCAGC
ATTAGCCTATGGTTTCGATGCCACTGGTGATAAGGAAAAGAATATCTTGGTTTACGATTT
AGGTGGTGGTACATTTGATGTTTCAGTTTTATCCATTGAAGATGGTGTATTTGAAGTTCG
TTCAACCAATGGTGACACTCATTTAG----------
Length of 5' end seq. 686
3' end seq. ID SLC413Z
3' end seq. 
>SLC413Z.Seq
----------AAGCCGATATCGATCGTATGGTCAAAGAAGCTGCCGATGCCGCTGATGAA
GATAAAGCTGCCAAAGAACGTGTCGAAGCCAAGAATACCTTGGAAAATTACATCTATCAA
ATTAAAACCACCATTGGTGATAAAGATAAGATCGGTGGTAAAATCGAATCAGATGATAAA
GAAACCATTGAAACCGCTATCTCTGATGCCCTTTCTTGGTTGGATGTTAACTCCTCTGCC
GAAAAAGAAGAATTTGATGAACAATACAAAATCCTTGAAAAGATCGTTCAACCAATCTTC
TCTAAATTATATGGTGCTGCTGGTGGTTCCCCAAATGGCGCTGGTGAAGATATGCCAAAC
CATGATGAACTTTAAACGCAATTTTCAAATTTTTTAAAAAAAAAAAGTATAGATTTTAAA
AAAAAAATAAAAAATAAAATAAAAAAAAAAAATATAAAACAAAAAAAAAAAAAAAA
Length of 3' end seq. 466
Connected seq. ID SLC413P
Connected seq. 
>SLC413P.Seq
GAAAGATTATGGAAGTGTTATTGGTATTGATTTAGGTACTACCTATTCATGTGTTGGTGT
CTTCAAGAAAGGTAAAGTTGAAATTATTCCAAATGATCAAGGTAATCGTATTACTCCATC
ATATGTTGCATTCACTGAAACTGAACGTCTCATTGGTGAAGCTGCAAAGAATCAAGCAAC
TCTCAACCCAGAAAATACAATTTTTGATATTAAACGTTTAATTGGTAGAAGATTTGATGA
TGAAGAAGTTCAAAGAGATATGAAATTATTACCATATAAAATTGTTTCAAAAAATAATAA
ACCATACGTTGTAGTTAAAGTTAAAGGTGAAGAAAAGACTTACTCACCAGAAGAAATCTC
AGCAATGATCCTTGGTAGAATGAAGGAAATTGCCGAAGCATCCCTTGGTAAGACAGTAAC
TCACGCCGTTGTAACATGTCCAGCTTATTTCAATGATGCACAACGTGCAGCCACAAAGGA
TGCAGGTGTTATTGCAGGTCTTGAAGTTTTACGTGTTATTAATGAACCAACCGCAGCAGC
ATTAGCCTATGGTTTCGATGCCACTGGTGATAAGGAAAAGAATATCTTGGTTTACGATTT
AGGTGGTGGTACATTTGATGTTTCAGTTTTATCCATTGAAGATGGTGTATTTGAAGTTCG
TTCAACCAATGGTGACACTCATTTAG----------AAGCCGATATCGATCGTATGGTCA
AAGAAGCTGCCGATGCCGCTGATGAAGATAAAGCTGCCAAAGAACGTGTCGAAGCCAAGA
ATACCTTGGAAAATTACATCTATCAAATTAAAACCACCATTGGTGATAAAGATAAGATCG
GTGGTAAAATCGAATCAGATGATAAAGAAACCATTGAAACCGCTATCTCTGATGCCCTTT
CTTGGTTGGATGTTAACTCCTCTGCCGAAAAAGAAGAATTTGATGAACAATACAAAATCC
TTGAAAAGATCGTTCAACCAATCTTCTCTAAATTATATGGTGCTGCTGGTGGTTCCCCAA
ATGGCGCTGGTGAAGATATGCCAAACCATGATGAACTTTAAACGCAATTTTCAAATTTTT
TAAAAAAAAAAAGTATAGATTTTAAAAAAAAAATAAAAAATAAAATAAAAAAAAAAAATA
TAAAACAAAAAAAAAAAAAAAA
Length of connected seq. 1152
Full length Seq ID -
Full length Seq. -
Length of full length seq. -